HEADER LYASE 13-APR-18 6D2C TITLE STRUCTURE OF ULVAN LYASE FROM NONLABEN ULVANIVORANS- NLR48 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ULVAN LYASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NONLABENS ULVANIVORANS; SOURCE 3 ORGANISM_TAXID: 906888; SOURCE 4 GENE: IL45_01530; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS STRUCTURE OF NLR48, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.ULAGANATHAN,M.CYGLER REVDAT 3 17-APR-19 6D2C 1 REMARK REVDAT 2 19-DEC-18 6D2C 1 JRNL REVDAT 1 06-JUN-18 6D2C 0 JRNL AUTH T.ULAGANATHAN,E.BANIN,W.HELBERT,M.CYGLER JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF PL28 FAMILY JRNL TITL 2 ULVAN LYASE NLR48 FROMNONLABENS ULVANIVORANS. JRNL REF J. BIOL. CHEM. V. 293 11564 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29875159 JRNL DOI 10.1074/JBC.RA118.003659 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 68860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2482 - 4.5923 1.00 5068 152 0.1607 0.1759 REMARK 3 2 4.5923 - 3.6455 1.00 4867 143 0.1378 0.1484 REMARK 3 3 3.6455 - 3.1848 1.00 4817 143 0.1604 0.1903 REMARK 3 4 3.1848 - 2.8937 1.00 4808 146 0.1738 0.2091 REMARK 3 5 2.8937 - 2.6863 1.00 4777 141 0.1811 0.2340 REMARK 3 6 2.6863 - 2.5279 1.00 4758 143 0.1741 0.2081 REMARK 3 7 2.5279 - 2.4013 1.00 4779 145 0.1774 0.2383 REMARK 3 8 2.4013 - 2.2968 1.00 4724 142 0.1762 0.2216 REMARK 3 9 2.2968 - 2.2084 1.00 4750 141 0.1844 0.2426 REMARK 3 10 2.2084 - 2.1322 1.00 4753 138 0.1765 0.2253 REMARK 3 11 2.1322 - 2.0655 1.00 4711 142 0.1807 0.2141 REMARK 3 12 2.0655 - 2.0065 1.00 4713 143 0.1956 0.2371 REMARK 3 13 2.0065 - 1.9536 1.00 4749 141 0.2176 0.2412 REMARK 3 14 1.9536 - 1.9060 0.97 4585 141 0.2710 0.3190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 4199 REMARK 3 ANGLE : 1.214 5703 REMARK 3 CHIRALITY : 0.084 573 REMARK 3 PLANARITY : 0.008 788 REMARK 3 DIHEDRAL : 11.252 2469 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D2C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68867 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 46.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13400 REMARK 200 FOR THE DATA SET : 10.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.16700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.49 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE, 0.91 M POTASSIUM PHOSPHATE DIBASIC, PH 6.9, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 282.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.24400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.85400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.05850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.85400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.24400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.05850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 LYS A 5 REMARK 465 TYR A 6 REMARK 465 ASN A 7 REMARK 465 THR A 8 REMARK 465 THR A 9 REMARK 465 ARG A 10 REMARK 465 VAL A 11 REMARK 465 ILE A 12 REMARK 465 LEU A 13 REMARK 465 MSE A 14 REMARK 465 ILE A 15 REMARK 465 ALA A 16 REMARK 465 PHE A 17 REMARK 465 ILE A 18 REMARK 465 SER A 19 REMARK 465 LEU A 20 REMARK 465 SER A 21 REMARK 465 ALA A 22 REMARK 465 CYS A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 GLU A 26 REMARK 465 ASP A 27 REMARK 465 ALA A 28 REMARK 465 MSE A 29 REMARK 465 ILE A 30 REMARK 465 GLU A 31 REMARK 465 GLU A 32 REMARK 465 GLU A 33 REMARK 465 GLN A 34 REMARK 465 VAL A 35 REMARK 465 ILE A 36 REMARK 465 PRO A 37 REMARK 465 ASP A 38 REMARK 465 PRO A 39 REMARK 465 ASP A 40 REMARK 465 PRO A 41 REMARK 465 VAL A 42 REMARK 465 ALA A 43 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 LYS B 5 REMARK 465 TYR B 6 REMARK 465 ASN B 7 REMARK 465 THR B 8 REMARK 465 THR B 9 REMARK 465 ARG B 10 REMARK 465 VAL B 11 REMARK 465 ILE B 12 REMARK 465 LEU B 13 REMARK 465 MSE B 14 REMARK 465 ILE B 15 REMARK 465 ALA B 16 REMARK 465 PHE B 17 REMARK 465 ILE B 18 REMARK 465 SER B 19 REMARK 465 LEU B 20 REMARK 465 SER B 21 REMARK 465 ALA B 22 REMARK 465 CYS B 23 REMARK 465 SER B 24 REMARK 465 SER B 25 REMARK 465 GLU B 26 REMARK 465 ASP B 27 REMARK 465 ALA B 28 REMARK 465 MSE B 29 REMARK 465 ILE B 30 REMARK 465 GLU B 31 REMARK 465 GLU B 32 REMARK 465 GLU B 33 REMARK 465 GLN B 34 REMARK 465 VAL B 35 REMARK 465 ILE B 36 REMARK 465 PRO B 37 REMARK 465 ASP B 38 REMARK 465 PRO B 39 REMARK 465 ASP B 40 REMARK 465 PRO B 41 REMARK 465 VAL B 42 REMARK 465 ALA B 43 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 44 CG CD OE1 NE2 REMARK 470 PRO A 245 CG CD REMARK 470 GLN A 247 CD OE1 NE2 REMARK 470 GLN B 44 CG CD OE1 NE2 REMARK 470 ASN B 190 CG OD1 ND2 REMARK 470 PRO B 245 CG CD REMARK 470 GLN B 247 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 113 -101.72 -115.81 REMARK 500 LEU A 221 -72.07 -105.23 REMARK 500 ARG A 282 123.51 79.70 REMARK 500 VAL A 283 80.14 -160.90 REMARK 500 THR B 113 -100.30 -117.82 REMARK 500 LEU B 221 -69.88 -106.72 REMARK 500 ASN B 227 -27.53 83.23 REMARK 500 ARG B 282 122.35 82.51 REMARK 500 VAL B 283 78.83 -161.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 857 DISTANCE = 5.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 59 O REMARK 620 2 ASN A 61 OD1 80.6 REMARK 620 3 ASP A 79 OD1 150.4 78.9 REMARK 620 4 ASP A 79 OD2 144.8 84.6 53.2 REMARK 620 5 SER A 81 O 80.4 93.4 79.8 132.5 REMARK 620 6 ALA A 84 O 95.2 175.8 104.9 99.1 85.6 REMARK 620 7 ASN A 85 OD1 74.3 94.3 128.2 75.2 151.9 84.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 59 O REMARK 620 2 ASN B 61 OD1 80.9 REMARK 620 3 ASP B 79 OD1 148.2 79.2 REMARK 620 4 ASP B 79 OD2 147.3 84.1 53.6 REMARK 620 5 SER B 81 O 78.9 95.3 78.5 131.5 REMARK 620 6 ALA B 84 O 96.3 177.2 103.3 98.5 83.9 REMARK 620 7 ASN B 85 OD1 77.5 94.7 128.6 75.0 152.5 84.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6D3U RELATED DB: PDB DBREF1 6D2C A 1 303 UNP A0A084JZF2_9FLAO DBREF2 6D2C A A0A084JZF2 1 303 DBREF1 6D2C B 1 303 UNP A0A084JZF2_9FLAO DBREF2 6D2C B A0A084JZF2 1 303 SEQRES 1 A 303 MSE ARG LYS LEU LYS TYR ASN THR THR ARG VAL ILE LEU SEQRES 2 A 303 MSE ILE ALA PHE ILE SER LEU SER ALA CYS SER SER GLU SEQRES 3 A 303 ASP ALA MSE ILE GLU GLU GLU GLN VAL ILE PRO ASP PRO SEQRES 4 A 303 ASP PRO VAL ALA GLN THR ASP GLU ASP THR GLY PRO VAL SEQRES 5 A 303 VAL ASP CYS THR ASN GLN GLY THR ASN PRO THR ARG ASP SEQRES 6 A 303 THR ASP ILE PRO ASN PRO ARG ASN ILE GLY ASP ILE ASP SEQRES 7 A 303 ASP ARG SER CYS TYR ALA ASN TYR SER GLU SER SER ILE SEQRES 8 A 303 LEU GLY LYS PHE TRP GLY ILE TYR ASN ILE THR ASP GLY SEQRES 9 A 303 SER ASN HIS MSE ASP ALA PRO ASN THR LEU GLN PRO ARG SEQRES 10 A 303 ILE GLU ARG SER LEU SER ARG SER GLN ALA THR GLY ALA SEQRES 11 A 303 GLY SER TYR ALA ARG PHE ARG GLY VAL LEU ARG ILE LEU SEQRES 12 A 303 GLU VAL GLY ASP THR GLY THR PHE SER SER SER GLY SER SEQRES 13 A 303 TYR PHE MSE GLN ALA LYS GLY LYS HIS THR GLY GLY GLY SEQRES 14 A 303 GLY SER PRO ASP PRO ALA ILE CYS LEU TYR ARG ALA HIS SEQRES 15 A 303 PRO VAL TYR GLY ASP ASP GLY ASN GLY ASN GLN VAL GLN SEQRES 16 A 303 VAL SER PHE ASP ILE TRP ARG GLU GLN ILE ASN PHE ARG SEQRES 17 A 303 GLY GLY SER GLY SER ALA GLY ARG THR GLU VAL PHE LEU SEQRES 18 A 303 LYS ASN VAL LEU LYS ASN GLU GLN ILE ASP ILE GLU LEU SEQRES 19 A 303 GLU VAL GLY PHE ARG ASP ASP PRO ASN ASN PRO GLY GLN SEQRES 20 A 303 THR LEU HIS TYR ALA ASP ALA LYS ILE GLY GLY GLU GLU SEQRES 21 A 303 PHE ASN TRP ASN ILE PRO GLU PRO GLU ARG GLY ILE GLU SEQRES 22 A 303 SER GLY ILE ARG TYR GLY ALA TYR ARG VAL LYS GLY GLY SEQRES 23 A 303 ARG ALA GLN PHE ARG TRP ALA ASN THR SER TYR THR LYS SEQRES 24 A 303 ASP GLU VAL ASN SEQRES 1 B 303 MSE ARG LYS LEU LYS TYR ASN THR THR ARG VAL ILE LEU SEQRES 2 B 303 MSE ILE ALA PHE ILE SER LEU SER ALA CYS SER SER GLU SEQRES 3 B 303 ASP ALA MSE ILE GLU GLU GLU GLN VAL ILE PRO ASP PRO SEQRES 4 B 303 ASP PRO VAL ALA GLN THR ASP GLU ASP THR GLY PRO VAL SEQRES 5 B 303 VAL ASP CYS THR ASN GLN GLY THR ASN PRO THR ARG ASP SEQRES 6 B 303 THR ASP ILE PRO ASN PRO ARG ASN ILE GLY ASP ILE ASP SEQRES 7 B 303 ASP ARG SER CYS TYR ALA ASN TYR SER GLU SER SER ILE SEQRES 8 B 303 LEU GLY LYS PHE TRP GLY ILE TYR ASN ILE THR ASP GLY SEQRES 9 B 303 SER ASN HIS MSE ASP ALA PRO ASN THR LEU GLN PRO ARG SEQRES 10 B 303 ILE GLU ARG SER LEU SER ARG SER GLN ALA THR GLY ALA SEQRES 11 B 303 GLY SER TYR ALA ARG PHE ARG GLY VAL LEU ARG ILE LEU SEQRES 12 B 303 GLU VAL GLY ASP THR GLY THR PHE SER SER SER GLY SER SEQRES 13 B 303 TYR PHE MSE GLN ALA LYS GLY LYS HIS THR GLY GLY GLY SEQRES 14 B 303 GLY SER PRO ASP PRO ALA ILE CYS LEU TYR ARG ALA HIS SEQRES 15 B 303 PRO VAL TYR GLY ASP ASP GLY ASN GLY ASN GLN VAL GLN SEQRES 16 B 303 VAL SER PHE ASP ILE TRP ARG GLU GLN ILE ASN PHE ARG SEQRES 17 B 303 GLY GLY SER GLY SER ALA GLY ARG THR GLU VAL PHE LEU SEQRES 18 B 303 LYS ASN VAL LEU LYS ASN GLU GLN ILE ASP ILE GLU LEU SEQRES 19 B 303 GLU VAL GLY PHE ARG ASP ASP PRO ASN ASN PRO GLY GLN SEQRES 20 B 303 THR LEU HIS TYR ALA ASP ALA LYS ILE GLY GLY GLU GLU SEQRES 21 B 303 PHE ASN TRP ASN ILE PRO GLU PRO GLU ARG GLY ILE GLU SEQRES 22 B 303 SER GLY ILE ARG TYR GLY ALA TYR ARG VAL LYS GLY GLY SEQRES 23 B 303 ARG ALA GLN PHE ARG TRP ALA ASN THR SER TYR THR LYS SEQRES 24 B 303 ASP GLU VAL ASN MODRES 6D2C MSE A 108 MET MODIFIED RESIDUE MODRES 6D2C MSE A 159 MET MODIFIED RESIDUE MODRES 6D2C MSE B 108 MET MODIFIED RESIDUE MODRES 6D2C MSE B 159 MET MODIFIED RESIDUE HET MSE A 108 8 HET MSE A 159 8 HET MSE B 108 8 HET MSE B 159 8 HET PO4 A 401 5 HET PO4 A 402 5 HET CA A 403 1 HET EDO A 404 10 HET PO4 B 401 5 HET PO4 B 402 5 HET CA B 403 1 HET EDO B 404 10 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 PO4 4(O4 P 3-) FORMUL 5 CA 2(CA 2+) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 11 HOH *710(H2 O) HELIX 1 AA1 THR A 56 THR A 60 5 5 HELIX 2 AA2 THR A 150 SER A 154 5 5 HELIX 3 AA3 SER A 211 GLY A 215 1 5 HELIX 4 AA4 GLU A 267 GLY A 271 5 5 HELIX 5 AA5 THR B 150 SER B 154 5 5 HELIX 6 AA6 SER B 211 GLY B 215 1 5 HELIX 7 AA7 GLU B 267 GLY B 271 5 5 SHEET 1 AA1 7 ASP A 76 ARG A 80 0 SHEET 2 AA1 7 ARG A 117 SER A 121 -1 O ARG A 117 N ARG A 80 SHEET 3 AA1 7 GLY A 275 TYR A 281 -1 O TYR A 278 N ARG A 120 SHEET 4 AA1 7 SER A 156 LYS A 162 -1 N TYR A 157 O TYR A 281 SHEET 5 AA1 7 ALA A 175 ASP A 187 -1 O CYS A 177 N ALA A 161 SHEET 6 AA1 7 GLN A 193 ILE A 205 -1 O VAL A 194 N GLY A 186 SHEET 7 AA1 7 ARG A 216 LEU A 225 -1 O LYS A 222 N ILE A 200 SHEET 1 AA2 7 SER A 87 ILE A 91 0 SHEET 2 AA2 7 LYS A 94 THR A 102 -1 O ILE A 98 N SER A 87 SHEET 3 AA2 7 ARG A 287 ASP A 300 -1 O TRP A 292 N GLY A 97 SHEET 4 AA2 7 TYR A 133 GLU A 144 -1 N ARG A 135 O THR A 298 SHEET 5 AA2 7 ILE A 230 ASP A 240 -1 O ILE A 230 N LEU A 140 SHEET 6 AA2 7 THR A 248 ILE A 256 -1 O LEU A 249 N ARG A 239 SHEET 7 AA2 7 GLU A 259 PHE A 261 -1 O PHE A 261 N ALA A 254 SHEET 1 AA3 7 ASP B 76 ARG B 80 0 SHEET 2 AA3 7 ARG B 117 SER B 121 -1 O ARG B 117 N ARG B 80 SHEET 3 AA3 7 GLY B 275 TYR B 281 -1 O TYR B 278 N ARG B 120 SHEET 4 AA3 7 SER B 156 LYS B 162 -1 N TYR B 157 O TYR B 281 SHEET 5 AA3 7 ALA B 175 ASP B 187 -1 O CYS B 177 N ALA B 161 SHEET 6 AA3 7 GLN B 193 ILE B 205 -1 O VAL B 194 N GLY B 186 SHEET 7 AA3 7 ARG B 216 LEU B 225 -1 O VAL B 219 N ARG B 202 SHEET 1 AA4 7 SER B 87 ILE B 91 0 SHEET 2 AA4 7 LYS B 94 THR B 102 -1 O ILE B 98 N SER B 87 SHEET 3 AA4 7 ARG B 287 ASP B 300 -1 O TRP B 292 N GLY B 97 SHEET 4 AA4 7 TYR B 133 GLU B 144 -1 N ARG B 135 O THR B 298 SHEET 5 AA4 7 ILE B 230 ASP B 241 -1 O ILE B 232 N GLY B 138 SHEET 6 AA4 7 ASN B 244 ILE B 256 -1 O ASP B 253 N GLU B 235 SHEET 7 AA4 7 GLU B 259 PHE B 261 -1 O PHE B 261 N ALA B 254 SHEET 1 AA5 7 SER B 87 ILE B 91 0 SHEET 2 AA5 7 LYS B 94 THR B 102 -1 O ILE B 98 N SER B 87 SHEET 3 AA5 7 ARG B 287 ASP B 300 -1 O TRP B 292 N GLY B 97 SHEET 4 AA5 7 TYR B 133 GLU B 144 -1 N ARG B 135 O THR B 298 SHEET 5 AA5 7 ILE B 230 ASP B 241 -1 O ILE B 232 N GLY B 138 SHEET 6 AA5 7 ASN B 244 ILE B 256 -1 O ASP B 253 N GLU B 235 SHEET 7 AA5 7 ASN B 264 ILE B 265 -1 O ILE B 265 N HIS B 250 SSBOND 1 CYS A 55 CYS A 82 1555 1555 2.07 SSBOND 2 CYS B 55 CYS B 82 1555 1555 2.07 LINK O GLY A 59 CA CA A 403 1555 1555 2.47 LINK OD1 ASN A 61 CA CA A 403 1555 1555 2.27 LINK OD1 ASP A 79 CA CA A 403 1555 1555 2.50 LINK OD2 ASP A 79 CA CA A 403 1555 1555 2.47 LINK O SER A 81 CA CA A 403 1555 1555 2.24 LINK O ALA A 84 CA CA A 403 1555 1555 2.30 LINK OD1 ASN A 85 CA CA A 403 1555 1555 2.44 LINK C HIS A 107 N MSE A 108 1555 1555 1.34 LINK C MSE A 108 N ASP A 109 1555 1555 1.33 LINK C PHE A 158 N MSE A 159 1555 1555 1.34 LINK C MSE A 159 N GLN A 160 1555 1555 1.32 LINK O GLY B 59 CA CA B 403 1555 1555 2.53 LINK OD1 ASN B 61 CA CA B 403 1555 1555 2.30 LINK OD1 ASP B 79 CA CA B 403 1555 1555 2.49 LINK OD2 ASP B 79 CA CA B 403 1555 1555 2.38 LINK O SER B 81 CA CA B 403 1555 1555 2.28 LINK O ALA B 84 CA CA B 403 1555 1555 2.33 LINK OD1 ASN B 85 CA CA B 403 1555 1555 2.45 LINK C HIS B 107 N MSE B 108 1555 1555 1.33 LINK C MSE B 108 N ASP B 109 1555 1555 1.33 LINK C PHE B 158 N MSE B 159 1555 1555 1.34 LINK C MSE B 159 N GLN B 160 1555 1555 1.32 SITE 1 AC1 10 ARG A 117 GLN A 160 LYS A 162 ASP A 173 SITE 2 AC1 10 ALA A 175 LEU A 178 TYR A 281 PO4 A 402 SITE 3 AC1 10 HOH A 527 HOH A 745 SITE 1 AC2 9 SER A 171 PRO A 174 ALA A 175 ARG A 216 SITE 2 AC2 9 PO4 A 401 HOH A 527 HOH A 544 HOH A 592 SITE 3 AC2 9 HOH A 743 SITE 1 AC3 6 GLY A 59 ASN A 61 ASP A 79 SER A 81 SITE 2 AC3 6 ALA A 84 ASN A 85 SITE 1 AC4 6 SER A 123 HOH A 502 HOH A 542 HOH A 660 SITE 2 AC4 6 HOH A 706 HOH B 684 SITE 1 AC5 8 ARG B 117 GLN B 160 LYS B 162 ASP B 173 SITE 2 AC5 8 ALA B 175 LEU B 178 TYR B 281 PO4 B 402 SITE 1 AC6 8 SER B 171 PRO B 174 ALA B 175 ARG B 216 SITE 2 AC6 8 PO4 B 401 HOH B 524 HOH B 571 HOH B 744 SITE 1 AC7 6 GLY B 59 ASN B 61 ASP B 79 SER B 81 SITE 2 AC7 6 ALA B 84 ASN B 85 SITE 1 AC8 5 HOH A 677 SER B 123 HOH B 504 HOH B 514 SITE 2 AC8 5 HOH B 623 CRYST1 82.488 102.117 103.708 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009642 0.00000