HEADER OXIDOREDUCTASE 14-APR-18 6D2V TITLE APO STRUCTURE OF TERB, AN NADP DEPENDENT OXIDOREDUCTASE IN THE TITLE 2 TERFESTATIN BIOSYNTHESIS PATHWAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: TERB OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES; SOURCE 3 ORGANISM_TAXID: 1883; SOURCE 4 STRAIN: RM. 5-8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL 21 KEYWDS NADPH REDUCTASE, NATURAL PRODUCTS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.CLINGER,S.I.ELSHAHAWI,Y.ZHANG,R.P.HALL,Y.LIU,J.S.THORSON, AUTHOR 2 G.N.PHILLIPS JR. REVDAT 3 13-MAR-24 6D2V 1 REMARK REVDAT 2 04-DEC-19 6D2V 1 REMARK REVDAT 1 13-JUN-18 6D2V 0 JRNL AUTH J.A.CLINGER,S.I.ELSHAHAWI,Y.ZHANG,R.P.HALL,Y.LIU,M.D.MILLER, JRNL AUTH 2 J.S.THORSON,G.N.PHILLIPS JR. JRNL TITL STRUCTURE AND FUNCTION OF TERFESTATIN BIOSYNTHESIS ENZYMES JRNL TITL 2 TERB AND TERC JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 52578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7243 - 5.0688 0.99 2808 148 0.1741 0.1921 REMARK 3 2 5.0688 - 4.0246 1.00 2715 142 0.1252 0.1507 REMARK 3 3 4.0246 - 3.5162 1.00 2666 141 0.1383 0.1520 REMARK 3 4 3.5162 - 3.1949 1.00 2675 141 0.1649 0.1984 REMARK 3 5 3.1949 - 2.9660 1.00 2626 138 0.1754 0.2135 REMARK 3 6 2.9660 - 2.7912 1.00 2625 138 0.1659 0.2083 REMARK 3 7 2.7912 - 2.6514 1.00 2639 139 0.1629 0.2182 REMARK 3 8 2.6514 - 2.5361 1.00 2614 138 0.1579 0.2269 REMARK 3 9 2.5361 - 2.4384 1.00 2601 137 0.1614 0.1960 REMARK 3 10 2.4384 - 2.3543 1.00 2633 138 0.1563 0.2047 REMARK 3 11 2.3543 - 2.2807 1.00 2626 138 0.1506 0.1965 REMARK 3 12 2.2807 - 2.2155 1.00 2607 138 0.1589 0.2039 REMARK 3 13 2.2155 - 2.1572 1.00 2594 136 0.1622 0.2482 REMARK 3 14 2.1572 - 2.1046 1.00 2608 138 0.1734 0.1932 REMARK 3 15 2.1046 - 2.0567 1.00 2589 136 0.1893 0.2447 REMARK 3 16 2.0567 - 2.0130 1.00 2571 135 0.1947 0.2638 REMARK 3 17 2.0130 - 1.9727 1.00 2583 137 0.1970 0.2461 REMARK 3 18 1.9727 - 1.9355 1.00 2613 137 0.2114 0.2642 REMARK 3 19 1.9355 - 1.9009 0.98 2555 135 0.2374 0.2845 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5114 REMARK 3 ANGLE : 0.853 6997 REMARK 3 CHIRALITY : 0.050 761 REMARK 3 PLANARITY : 0.005 956 REMARK 3 DIHEDRAL : 13.707 1910 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 2 THROUGH 20 OR RESID REMARK 3 22 THROUGH 52 OR RESID 54 THROUGH 118 OR REMARK 3 RESID 120 THROUGH 248 OR RESID 250 REMARK 3 THROUGH 251 OR RESID 253 THROUGH 276 OR REMARK 3 RESID 278 THROUGH 285 OR RESID 287 REMARK 3 THROUGH 306)) REMARK 3 SELECTION : (CHAIN B AND (RESID 2 THROUGH 20 OR RESID REMARK 3 22 THROUGH 52 OR RESID 54 THROUGH 118 OR REMARK 3 RESID 120 THROUGH 248 OR RESID 250 REMARK 3 THROUGH 251 OR RESID 253 THROUGH 276 OR REMARK 3 RESID 278 THROUGH 285 OR RESID 287 REMARK 3 THROUGH 306)) REMARK 3 ATOM PAIRS NUMBER : 3378 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233870. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52609 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.346 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.374 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.35 REMARK 200 R MERGE FOR SHELL (I) : 0.71600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M POTASSIUM THIOCYANATE, 30% W/V REMARK 280 PEG MONOMETHYL ETHER 2000, 50 MM NACL, 10 MM HEPES BUFFER PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.25800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.75900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.29900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.75900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.25800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.29900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 SER B 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 191 O PRO A 197 1.55 REMARK 500 HH12 ARG A 249 O HOH A 505 1.60 REMARK 500 O HOH A 514 O HOH A 517 1.86 REMARK 500 O HOH B 517 O HOH B 526 1.91 REMARK 500 O HOH A 547 O HOH A 703 2.02 REMARK 500 O HOH B 576 O HOH B 690 2.04 REMARK 500 OE1 GLU A 196 O HOH A 501 2.05 REMARK 500 OE2 GLU B 240 O HOH B 501 2.08 REMARK 500 O HOH A 733 O HOH A 743 2.10 REMARK 500 O HOH A 564 O HOH A 673 2.11 REMARK 500 OE2 GLU A 253 O HOH A 502 2.12 REMARK 500 O HOH B 520 O HOH B 681 2.16 REMARK 500 O HOH B 518 O HOH B 653 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG A 286 OE2 GLU B 25 2555 1.50 REMARK 500 HH22 ARG A 286 OE2 GLU B 25 2555 1.59 REMARK 500 O HOH A 505 O HOH A 647 3655 2.00 REMARK 500 O HOH A 531 O HOH B 508 2555 2.11 REMARK 500 NH1 ARG A 286 OE2 GLU B 25 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 135.54 -175.61 REMARK 500 ARG A 81 82.76 -158.96 REMARK 500 ASP A 84 -1.01 -150.24 REMARK 500 CYS A 105 30.13 -98.11 REMARK 500 SER A 115 -155.85 -114.17 REMARK 500 GLN A 123 -136.28 -106.92 REMARK 500 ASN A 173 -150.43 -87.13 REMARK 500 HIS A 301 52.01 -141.16 REMARK 500 TRP B 54 118.03 -162.44 REMARK 500 CYS B 105 31.55 -98.90 REMARK 500 SER B 115 -156.25 -113.85 REMARK 500 GLN B 123 -137.94 -108.71 REMARK 500 ASP B 136 -8.47 -142.86 REMARK 500 ASN B 173 -151.20 -87.07 REMARK 500 HIS B 301 55.30 -140.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN B 403 DBREF 6D2V A -7 307 PDB 6D2V 6D2V -7 307 DBREF 6D2V B -7 307 PDB 6D2V 6D2V -7 307 SEQRES 1 A 315 GLY LEU VAL PRO ARG GLY SER HIS MET GLU GLY LYS LYS SEQRES 2 A 315 ILE LEU VAL THR GLY GLY THR GLY GLN VAL ALA ARG PRO SEQRES 3 A 315 VAL ALA GLU ALA LEU ALA GLU ARG ASN GLU VAL TRP CYS SEQRES 4 A 315 LEU GLY ARG PHE GLY THR PRO GLY VAL GLU LYS GLU LEU SEQRES 5 A 315 ASN ASP ARG GLY ILE THR THR PHE HIS TRP ASP MET ASP SEQRES 6 A 315 ASP PRO GLY ALA ALA ALA TYR GLU GLY LEU PRO ASP ASP SEQRES 7 A 315 PHE THR HIS VAL LEU HIS SER ALA VAL ARG ARG GLY GLU SEQRES 8 A 315 ASP GLY ASP VAL ASN ALA ALA VAL GLU VAL ASN SER VAL SEQRES 9 A 315 ALA CYS GLY ARG LEU MET THR HIS CYS ARG GLY ALA GLU SEQRES 10 A 315 ALA PHE LEU PHE VAL SER THR GLY ALA LEU TYR LYS ARG SEQRES 11 A 315 GLN THR LEU ASP HIS ALA TYR THR GLU ASP ASP PRO VAL SEQRES 12 A 315 ASP GLY VAL ALA ASP TRP LEU PRO ALA TYR PRO VAL GLY SEQRES 13 A 315 LYS ILE ALA ALA GLU GLY ALA VAL ARG ALA PHE ALA GLN SEQRES 14 A 315 VAL LEU ASN LEU PRO THR THR ILE ALA ARG LEU ASN ILE SEQRES 15 A 315 ALA TYR GLY PRO GLY GLY TYR GLY GLY VAL PRO MET LEU SEQRES 16 A 315 TYR PHE LYS ARG MET LEU ALA GLY GLU PRO ILE PRO VAL SEQRES 17 A 315 PRO LYS GLU GLY GLN ASN TRP CYS SER LEU LEU HIS THR SEQRES 18 A 315 ASP ASP LEU VAL ALA HIS VAL PRO ARG LEU TRP GLU ALA SEQRES 19 A 315 ALA ALA THR PRO ALA THR LEU VAL ASN TRP GLY GLY ASP SEQRES 20 A 315 GLU ALA VAL GLY ILE THR ASP CYS VAL ARG TYR LEU GLU SEQRES 21 A 315 GLU LEU THR GLY VAL ARG ALA ARG LEU VAL PRO SER GLU SEQRES 22 A 315 VAL THR ARG GLU THR TYR ARG PHE ASP PRO THR ARG ARG SEQRES 23 A 315 ARG GLU ILE THR GLY PRO CYS ARG VAL PRO TRP ARG GLU SEQRES 24 A 315 GLY VAL ARG ARG THR LEU GLN ALA LEU HIS PRO GLU HIS SEQRES 25 A 315 LEU PRO SER SEQRES 1 B 315 GLY LEU VAL PRO ARG GLY SER HIS MET GLU GLY LYS LYS SEQRES 2 B 315 ILE LEU VAL THR GLY GLY THR GLY GLN VAL ALA ARG PRO SEQRES 3 B 315 VAL ALA GLU ALA LEU ALA GLU ARG ASN GLU VAL TRP CYS SEQRES 4 B 315 LEU GLY ARG PHE GLY THR PRO GLY VAL GLU LYS GLU LEU SEQRES 5 B 315 ASN ASP ARG GLY ILE THR THR PHE HIS TRP ASP MET ASP SEQRES 6 B 315 ASP PRO GLY ALA ALA ALA TYR GLU GLY LEU PRO ASP ASP SEQRES 7 B 315 PHE THR HIS VAL LEU HIS SER ALA VAL ARG ARG GLY GLU SEQRES 8 B 315 ASP GLY ASP VAL ASN ALA ALA VAL GLU VAL ASN SER VAL SEQRES 9 B 315 ALA CYS GLY ARG LEU MET THR HIS CYS ARG GLY ALA GLU SEQRES 10 B 315 ALA PHE LEU PHE VAL SER THR GLY ALA LEU TYR LYS ARG SEQRES 11 B 315 GLN THR LEU ASP HIS ALA TYR THR GLU ASP ASP PRO VAL SEQRES 12 B 315 ASP GLY VAL ALA ASP TRP LEU PRO ALA TYR PRO VAL GLY SEQRES 13 B 315 LYS ILE ALA ALA GLU GLY ALA VAL ARG ALA PHE ALA GLN SEQRES 14 B 315 VAL LEU ASN LEU PRO THR THR ILE ALA ARG LEU ASN ILE SEQRES 15 B 315 ALA TYR GLY PRO GLY GLY TYR GLY GLY VAL PRO MET LEU SEQRES 16 B 315 TYR PHE LYS ARG MET LEU ALA GLY GLU PRO ILE PRO VAL SEQRES 17 B 315 PRO LYS GLU GLY GLN ASN TRP CYS SER LEU LEU HIS THR SEQRES 18 B 315 ASP ASP LEU VAL ALA HIS VAL PRO ARG LEU TRP GLU ALA SEQRES 19 B 315 ALA ALA THR PRO ALA THR LEU VAL ASN TRP GLY GLY ASP SEQRES 20 B 315 GLU ALA VAL GLY ILE THR ASP CYS VAL ARG TYR LEU GLU SEQRES 21 B 315 GLU LEU THR GLY VAL ARG ALA ARG LEU VAL PRO SER GLU SEQRES 22 B 315 VAL THR ARG GLU THR TYR ARG PHE ASP PRO THR ARG ARG SEQRES 23 B 315 ARG GLU ILE THR GLY PRO CYS ARG VAL PRO TRP ARG GLU SEQRES 24 B 315 GLY VAL ARG ARG THR LEU GLN ALA LEU HIS PRO GLU HIS SEQRES 25 B 315 LEU PRO SER HET NDP A 401 78 HET SCN A 402 3 HET CL A 403 1 HET CL A 404 1 HET NDP B 401 78 HET SCN B 402 3 HET SCN B 403 3 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM SCN THIOCYANATE ION HETNAM CL CHLORIDE ION FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 SCN 3(C N S 1-) FORMUL 5 CL 2(CL 1-) FORMUL 10 HOH *476(H2 O) HELIX 1 AA1 PRO A -4 MET A 1 5 6 HELIX 2 AA2 VAL A 15 GLU A 25 1 11 HELIX 3 AA3 GLY A 39 ARG A 47 1 9 HELIX 4 AA4 GLY A 60 GLU A 65 5 6 HELIX 5 AA5 ASP A 86 CYS A 105 1 20 HELIX 6 AA6 ALA A 118 TYR A 120 5 3 HELIX 7 AA7 PRO A 143 ASN A 164 1 22 HELIX 8 AA8 GLY A 183 GLY A 195 1 13 HELIX 9 AA9 THR A 213 ALA A 226 1 14 HELIX 10 AB1 ILE A 244 GLY A 256 1 13 HELIX 11 AB2 PRO A 275 GLY A 283 1 9 HELIX 12 AB3 PRO A 288 HIS A 301 1 14 HELIX 13 AB4 PRO A 302 LEU A 305 5 4 HELIX 14 AB5 VAL B 15 ALA B 24 1 10 HELIX 15 AB6 GLY B 39 ASP B 46 1 8 HELIX 16 AB7 GLY B 60 GLU B 65 5 6 HELIX 17 AB8 ASP B 86 CYS B 105 1 20 HELIX 18 AB9 ALA B 118 TYR B 120 5 3 HELIX 19 AC1 PRO B 143 ASN B 164 1 22 HELIX 20 AC2 GLY B 183 GLY B 195 1 13 HELIX 21 AC3 THR B 213 ALA B 226 1 14 HELIX 22 AC4 ILE B 244 GLY B 256 1 13 HELIX 23 AC5 PRO B 275 GLY B 283 1 9 HELIX 24 AC6 PRO B 288 HIS B 301 1 14 HELIX 25 AC7 PRO B 302 LEU B 305 5 4 SHEET 1 AA1 7 THR A 50 HIS A 53 0 SHEET 2 AA1 7 GLU A 28 GLY A 33 1 N CYS A 31 O THR A 50 SHEET 3 AA1 7 LYS A 5 THR A 9 1 N ILE A 6 O GLU A 28 SHEET 4 AA1 7 HIS A 73 HIS A 76 1 O LEU A 75 N LEU A 7 SHEET 5 AA1 7 ALA A 110 THR A 116 1 O LEU A 112 N HIS A 76 SHEET 6 AA1 7 THR A 167 LEU A 172 1 O THR A 168 N PHE A 113 SHEET 7 AA1 7 THR A 232 TRP A 236 1 O THR A 232 N ILE A 169 SHEET 1 AA2 2 ALA A 128 TYR A 129 0 SHEET 2 AA2 2 ARG A 272 PHE A 273 1 O ARG A 272 N TYR A 129 SHEET 1 AA3 2 ALA A 175 TYR A 176 0 SHEET 2 AA3 2 LEU A 211 HIS A 212 1 O LEU A 211 N TYR A 176 SHEET 1 AA4 2 ILE A 198 PRO A 201 0 SHEET 2 AA4 2 LEU A 261 SER A 264 1 O SER A 264 N VAL A 200 SHEET 1 AA5 2 TRP A 207 CYS A 208 0 SHEET 2 AA5 2 VAL A 242 GLY A 243 -1 O VAL A 242 N CYS A 208 SHEET 1 AA6 7 THR B 50 HIS B 53 0 SHEET 2 AA6 7 GLU B 28 GLY B 33 1 N CYS B 31 O THR B 50 SHEET 3 AA6 7 LYS B 5 THR B 9 1 N ILE B 6 O GLU B 28 SHEET 4 AA6 7 HIS B 73 HIS B 76 1 O LEU B 75 N LEU B 7 SHEET 5 AA6 7 ALA B 110 THR B 116 1 O LEU B 112 N HIS B 76 SHEET 6 AA6 7 THR B 167 LEU B 172 1 O THR B 168 N PHE B 113 SHEET 7 AA6 7 THR B 232 TRP B 236 1 O THR B 232 N ILE B 169 SHEET 1 AA7 2 ALA B 128 TYR B 129 0 SHEET 2 AA7 2 ARG B 272 PHE B 273 1 O ARG B 272 N TYR B 129 SHEET 1 AA8 2 ALA B 175 TYR B 176 0 SHEET 2 AA8 2 LEU B 211 HIS B 212 1 O LEU B 211 N TYR B 176 SHEET 1 AA9 2 PRO B 197 PRO B 201 0 SHEET 2 AA9 2 ARG B 260 SER B 264 1 O ARG B 260 N ILE B 198 SHEET 1 AB1 2 TRP B 207 CYS B 208 0 SHEET 2 AB1 2 VAL B 242 GLY B 243 -1 O VAL B 242 N CYS B 208 CISPEP 1 THR A 229 PRO A 230 0 1.90 CISPEP 2 THR B 229 PRO B 230 0 0.16 SITE 1 AC1 37 GLY A 10 THR A 12 GLY A 13 GLN A 14 SITE 2 AC1 37 VAL A 15 GLY A 33 ARG A 34 PHE A 35 SITE 3 AC1 37 TRP A 54 ASP A 55 MET A 56 ASP A 57 SITE 4 AC1 37 SER A 77 ALA A 78 VAL A 79 ARG A 81 SITE 5 AC1 37 VAL A 114 SER A 115 THR A 116 TYR A 145 SITE 6 AC1 37 LYS A 149 LEU A 172 ASN A 173 ALA A 175 SITE 7 AC1 37 HOH A 511 HOH A 534 HOH A 541 HOH A 582 SITE 8 AC1 37 HOH A 591 HOH A 602 HOH A 607 HOH A 610 SITE 9 AC1 37 HOH A 635 HOH A 660 HOH A 661 HOH A 679 SITE 10 AC1 37 HOH A 706 SITE 1 AC2 1 VAL A 162 SITE 1 AC3 4 GLY A 39 LYS A 42 GLY A 204 TRP A 207 SITE 1 AC4 1 ARG A 81 SITE 1 AC5 35 GLY B 10 THR B 12 GLY B 13 GLN B 14 SITE 2 AC5 35 VAL B 15 GLY B 33 ARG B 34 PHE B 35 SITE 3 AC5 35 TRP B 54 ASP B 55 MET B 56 ASP B 57 SITE 4 AC5 35 SER B 77 ALA B 78 VAL B 79 ARG B 81 SITE 5 AC5 35 VAL B 114 SER B 115 TYR B 145 LYS B 149 SITE 6 AC5 35 LEU B 172 ASN B 173 ALA B 175 HOH B 527 SITE 7 AC5 35 HOH B 541 HOH B 547 HOH B 558 HOH B 565 SITE 8 AC5 35 HOH B 572 HOH B 581 HOH B 589 HOH B 599 SITE 9 AC5 35 HOH B 614 HOH B 644 HOH B 665 SITE 1 AC6 1 ASP B 84 SITE 1 AC7 4 MET A 192 PRO B 288 GLU B 291 ARG B 294 CRYST1 58.516 80.598 139.518 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017089 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012407 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007168 0.00000