HEADER SUGAR BINDING PROTEIN 14-APR-18 6D2Y TITLE CRYSTAL STRUCTURE OF SURFACE GLYCAN-BINDING PROTEIN PBSGBP-B FROM TITLE 2 PREVOTELLA BRYANTII COMPND MOL_ID: 1; COMPND 2 MOLECULE: PBSGBP-B LIPOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PREVOTELLA BRYANTII B14; SOURCE 3 ORGANISM_TAXID: 752555; SOURCE 4 GENE: PBR_0365; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: P15TV-LIC KEYWDS SURFACE GLYCAN BINDING PROTEIN, BETA SANDWICH, POLYSACCHARIDE KEYWDS 2 UTILIZATION LOCUS, PREVOTELLA BRYANTII, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,T.SKARINA,Z.WAWRZAK,N.MCGREGOR,R.DI LEO,H.BRUMER, AUTHOR 2 A.SAVCHENKO REVDAT 2 08-JAN-20 6D2Y 1 REMARK REVDAT 1 16-OCT-19 6D2Y 0 JRNL AUTH N.MCGREGOR JRNL TITL CRYSTAL STRUCTURE OF SURFACE GLYCAN-BINDING PROTEIN PBSGBP-B JRNL TITL 2 FROM PREVOTELLA BRYANTII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2733: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3373 - 4.7166 1.00 2894 140 0.1688 0.1999 REMARK 3 2 4.7166 - 3.7444 1.00 2696 165 0.1582 0.2019 REMARK 3 3 3.7444 - 3.2713 1.00 2679 147 0.2008 0.2271 REMARK 3 4 3.2713 - 2.9722 1.00 2665 128 0.2406 0.2636 REMARK 3 5 2.9722 - 2.7592 1.00 2654 118 0.2491 0.3423 REMARK 3 6 2.7592 - 2.5966 1.00 2612 159 0.2743 0.2776 REMARK 3 7 2.5966 - 2.4666 0.99 2623 139 0.2727 0.3522 REMARK 3 8 2.4666 - 2.3592 0.99 2605 149 0.2775 0.3386 REMARK 3 9 2.3592 - 2.2684 0.99 2625 110 0.2936 0.2916 REMARK 3 10 2.2684 - 2.1901 0.99 2611 122 0.3123 0.3382 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3434 REMARK 3 ANGLE : 0.647 4684 REMARK 3 CHIRALITY : 0.049 521 REMARK 3 PLANARITY : 0.004 604 REMARK 3 DIHEDRAL : 17.630 1214 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0938 64.1587 52.5960 REMARK 3 T TENSOR REMARK 3 T11: 0.4167 T22: 0.6152 REMARK 3 T33: 0.6648 T12: 0.0488 REMARK 3 T13: 0.1061 T23: 0.1180 REMARK 3 L TENSOR REMARK 3 L11: 5.8472 L22: 5.5917 REMARK 3 L33: 3.3362 L12: 1.1081 REMARK 3 L13: 0.2922 L23: 2.3230 REMARK 3 S TENSOR REMARK 3 S11: -0.3284 S12: -0.3775 S13: 0.6774 REMARK 3 S21: 0.5908 S22: 0.0314 S23: 0.9334 REMARK 3 S31: 0.1117 S32: -0.5585 S33: 0.2510 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.0660 35.8237 63.5274 REMARK 3 T TENSOR REMARK 3 T11: 0.5492 T22: 0.4374 REMARK 3 T33: 0.4444 T12: 0.0621 REMARK 3 T13: 0.0777 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 0.2003 L22: 4.8106 REMARK 3 L33: 2.1222 L12: -1.3007 REMARK 3 L13: 1.1527 L23: -3.6986 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: 0.1259 S13: 0.1378 REMARK 3 S21: 0.0768 S22: -0.2043 S23: -0.1813 REMARK 3 S31: -0.1221 S32: 0.2024 S33: 0.1533 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8329 15.3126 81.2008 REMARK 3 T TENSOR REMARK 3 T11: 0.4099 T22: 0.4428 REMARK 3 T33: 0.3964 T12: 0.1464 REMARK 3 T13: 0.0730 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 2.7963 L22: 1.6452 REMARK 3 L33: 2.7209 L12: 0.3051 REMARK 3 L13: -0.0996 L23: -0.9400 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: 0.0038 S13: 0.1038 REMARK 3 S21: 0.2030 S22: 0.1079 S23: 0.4225 REMARK 3 S31: -0.4701 S32: -0.7802 S33: -0.1290 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28099 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 43.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : 1.57500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES PH 6.5, 0.2 M AMMONIUM REMARK 280 SULFATE, 30 % PEG 5K MME, 1% (W/V) MPD, 15 MG/ML PROTEIN, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.23500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.45000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.11750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.45000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.35250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.45000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.45000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.11750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.45000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.45000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 114.35250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.23500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 ILE A 3 REMARK 465 LYS A 4 REMARK 465 ASN A 5 REMARK 465 ILE A 6 REMARK 465 THR A 7 REMARK 465 TRP A 8 REMARK 465 SER A 9 REMARK 465 PHE A 10 REMARK 465 MSE A 11 REMARK 465 ILE A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 THR A 15 REMARK 465 ALA A 16 REMARK 465 VAL A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 PHE A 21 REMARK 465 THR A 22 REMARK 465 SER A 23 REMARK 465 CYS A 24 REMARK 465 ALA A 25 REMARK 465 ASP A 26 REMARK 465 GLN A 27 REMARK 465 PRO A 28 REMARK 465 ASP A 29 REMARK 465 LYS A 30 REMARK 465 PHE A 31 REMARK 465 GLU A 32 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 49 35.85 -88.19 REMARK 500 ASN A 80 -117.81 57.45 REMARK 500 PRO A 213 37.03 -82.63 REMARK 500 ASP A 227 -44.00 -135.03 REMARK 500 SER A 240 70.38 -156.23 REMARK 500 ASP A 250 -155.23 -158.68 REMARK 500 ASN A 286 58.91 -156.47 REMARK 500 HIS A 296 76.16 59.26 REMARK 500 HIS A 364 51.46 -143.23 REMARK 500 MSE A 375 73.28 -150.30 REMARK 500 ASN A 380 75.41 56.06 REMARK 500 SER A 381 11.97 51.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 776 DISTANCE = 5.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 225 O REMARK 620 2 ASP A 227 OD2 73.9 REMARK 620 3 SER A 255 O 147.6 74.2 REMARK 620 4 ASN A 257 O 92.9 98.1 96.9 REMARK 620 5 ASP A 452 OD1 117.4 157.8 91.1 100.2 REMARK 620 6 ASP A 452 OD2 69.5 143.4 142.3 82.5 52.5 REMARK 620 7 HOH A 623 O 90.7 92.4 85.2 169.5 69.4 89.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 DBREF 6D2Y A 1 460 UNP D8DY16 D8DY16_PREBR 1 460 SEQRES 1 A 460 MSE LYS ILE LYS ASN ILE THR TRP SER PHE MSE ILE ALA SEQRES 2 A 460 LEU THR ALA VAL GLY SER GLY PHE THR SER CYS ALA ASP SEQRES 3 A 460 GLN PRO ASP LYS PHE GLU LEU ALA SER GLY THR PRO THR SEQRES 4 A 460 VAL TYR TYR ILE ARG PRO VAL ASP VAL ALA SER LYS ASP SEQRES 5 A 460 SER LEU LEU THR SER ALA SER LEU GLN SER THR ILE CYS SEQRES 6 A 460 LEU VAL GLY ASP ASN LEU LYS SER ILE LYS GLY ILE LEU SEQRES 7 A 460 PHE ASN ASP GLN ALA ALA VAL LEU ASN THR SER TYR ILE SEQRES 8 A 460 THR ASP HIS THR LEU ILE VAL SER VAL PRO ASN GLU ILE SEQRES 9 A 460 PRO SER VAL VAL THR ASP LYS MSE TYR MSE ILE THR ALA SEQRES 10 A 460 SER ASN ASP THR ILE PRO TYR ASP PHE GLN VAL THR ILE SEQRES 11 A 460 SER ALA PRO SER VAL VAL SER MSE SER ASN GLU TRP ALA SEQRES 12 A 460 LYS ALA GLY GLU GLU VAL THR ILE THR GLY ASP TYR PHE SEQRES 13 A 460 LEU ASP TYR ASP ASN TYR PRO LEU GLU ILE LYS VAL GLY SEQRES 14 A 460 LYS ASP TYR THR LEU PRO ARG GLU ALA ILE THR SER ILE SEQRES 15 A 460 GLU LYS THR LYS ILE THR PHE THR MSE PRO GLU ASP MSE SEQRES 16 A 460 PRO GLN HIS GLU ASP ILE VAL VAL SER ASP LYS TYR GLY SEQRES 17 A 460 SER THR ASN ALA PRO PHE GLN TYR MSE ASP ASN ARG GLY SEQRES 18 A 460 MSE LEU PHE ASP PHE ASP THR PRO ASN SER VAL THR ASN SEQRES 19 A 460 GLU VAL LEU GLY ASN SER GLY TRP HIS ASP ARG ILE ILE SEQRES 20 A 460 GLN SER ASP ASP THR SER LEU SER GLY ASN TYR MSE GLN SEQRES 21 A 460 ILE GLY ASN THR GLY VAL THR MSE ALA ALA ASN GLY LYS SEQRES 22 A 460 TRP ASN ASP GLU PHE SER PHE GLU TYR TRP ALA GLY ASN SEQRES 23 A 460 TRP ALA ASN PRO GLU THR TYR ALA SER HIS PRO ARG LEU SEQRES 24 A 460 CYS ASP VAL ALA ASP PHE SER ASP TRP THR ASN LYS SER SEQRES 25 A 460 LEU LYS PHE GLU MSE LEU ILE PRO ALA ASP ALA GLY TRP SEQRES 26 A 460 GLY ALA GLY PRO MSE GLN ILE ILE PHE GLY SER PRO SER SEQRES 27 A 460 GLN ILE SER LEU GLY ASN ALA GLY VAL VAL ASP VAL ASN SEQRES 28 A 460 GLY VAL THR LEU ALA GLY CYS ASN ASN THR TRP PHE HIS SEQRES 29 A 460 ALA GLN ASN GLY TRP GLY ARG ALA ILE TYR MSE PRO TRP SEQRES 30 A 460 TYR SER ASN SER SER ALA SER LEU TYR ASP THR GLY ASP SEQRES 31 A 460 LYS TRP VAL THR VAL THR ILE PRO LEU SER ASP PHE ASN SEQRES 32 A 460 LEU GLU PHE ASP GLY ASN SER ALA THR LYS SER PHE SER SEQRES 33 A 460 SER ILE ASN ASP PHE SER SER LEU ASN ILE PHE LEU ILE SEQRES 34 A 460 LYS GLY ALA TYR ASN ASP LYS SER VAL LEU PRO ASP GLY SEQRES 35 A 460 VAL GLU CYS THR PRO ILE ILE LYS ILE ASP ASN ILE ARG SEQRES 36 A 460 VAL VAL PRO ASN LYS MODRES 6D2Y MSE A 112 MET MODIFIED RESIDUE MODRES 6D2Y MSE A 114 MET MODIFIED RESIDUE MODRES 6D2Y MSE A 138 MET MODIFIED RESIDUE MODRES 6D2Y MSE A 191 MET MODIFIED RESIDUE MODRES 6D2Y MSE A 195 MET MODIFIED RESIDUE MODRES 6D2Y MSE A 217 MET MODIFIED RESIDUE MODRES 6D2Y MSE A 222 MET MODIFIED RESIDUE MODRES 6D2Y MSE A 259 MET MODIFIED RESIDUE MODRES 6D2Y MSE A 268 MET MODIFIED RESIDUE MODRES 6D2Y MSE A 317 MET MODIFIED RESIDUE MODRES 6D2Y MSE A 330 MET MODIFIED RESIDUE MODRES 6D2Y MSE A 375 MET MODIFIED RESIDUE HET MSE A 112 8 HET MSE A 114 8 HET MSE A 138 8 HET MSE A 191 8 HET MSE A 195 8 HET MSE A 217 8 HET MSE A 222 8 HET MSE A 259 8 HET MSE A 268 8 HET MSE A 317 8 HET MSE A 330 8 HET MSE A 375 8 HET MG A 501 1 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 GOL 5(C3 H8 O3) FORMUL 8 HOH *176(H2 O) HELIX 1 AA1 ASN A 70 LYS A 72 5 3 HELIX 2 AA2 ASN A 87 ILE A 91 5 5 HELIX 3 AA3 PRO A 175 GLU A 177 5 3 HELIX 4 AA4 ASN A 275 GLU A 277 5 3 HELIX 5 AA5 ARG A 298 ALA A 303 1 6 HELIX 6 AA6 ASP A 307 THR A 309 5 3 HELIX 7 AA7 THR A 361 ALA A 365 5 5 HELIX 8 AA8 SER A 400 PHE A 402 5 3 HELIX 9 AA9 SER A 417 SER A 422 5 6 HELIX 10 AB1 ALA A 432 LYS A 436 5 5 SHEET 1 AA1 3 THR A 39 PRO A 45 0 SHEET 2 AA1 3 THR A 63 ASP A 69 -1 O VAL A 67 N TYR A 41 SHEET 3 AA1 3 THR A 95 SER A 99 -1 O LEU A 96 N LEU A 66 SHEET 1 AA2 2 SER A 57 SER A 59 0 SHEET 2 AA2 2 GLN A 127 THR A 129 1 O THR A 129 N ALA A 58 SHEET 1 AA3 4 GLN A 82 ALA A 83 0 SHEET 2 AA3 4 ILE A 74 PHE A 79 -1 N PHE A 79 O GLN A 82 SHEET 3 AA3 4 LYS A 111 THR A 116 -1 O ILE A 115 N LYS A 75 SHEET 4 AA3 4 THR A 121 ASP A 125 -1 O TYR A 124 N MSE A 112 SHEET 1 AA4 4 SER A 134 MSE A 138 0 SHEET 2 AA4 4 GLU A 148 ASP A 154 -1 O ASP A 154 N SER A 134 SHEET 3 AA4 4 LYS A 186 THR A 190 -1 O PHE A 189 N VAL A 149 SHEET 4 AA4 4 ILE A 179 ILE A 182 -1 N SER A 181 O THR A 188 SHEET 1 AA5 4 TYR A 172 THR A 173 0 SHEET 2 AA5 4 GLU A 165 VAL A 168 -1 N VAL A 168 O TYR A 172 SHEET 3 AA5 4 ASP A 200 ASP A 205 -1 O SER A 204 N GLU A 165 SHEET 4 AA5 4 GLY A 208 GLN A 215 -1 O ALA A 212 N ILE A 201 SHEET 1 AA6 4 MSE A 222 PHE A 224 0 SHEET 2 AA6 4 ILE A 449 PRO A 458 -1 O ILE A 454 N PHE A 224 SHEET 3 AA6 4 TYR A 258 ILE A 261 -1 N MSE A 259 O ILE A 451 SHEET 4 AA6 4 ILE A 246 GLN A 248 -1 N GLN A 248 O TYR A 258 SHEET 1 AA7 4 MSE A 222 PHE A 224 0 SHEET 2 AA7 4 ILE A 449 PRO A 458 -1 O ILE A 454 N PHE A 224 SHEET 3 AA7 4 LYS A 311 LEU A 318 -1 N LYS A 314 O ARG A 455 SHEET 4 AA7 4 VAL A 393 PRO A 398 -1 O VAL A 395 N PHE A 315 SHEET 1 AA8 4 SER A 279 TYR A 282 0 SHEET 2 AA8 4 SER A 423 LEU A 428 -1 O ILE A 426 N PHE A 280 SHEET 3 AA8 4 MSE A 330 GLY A 335 -1 N GLN A 331 O PHE A 427 SHEET 4 AA8 4 ALA A 372 TYR A 374 -1 O ALA A 372 N ILE A 332 LINK C LYS A 111 N MSE A 112 1555 1555 1.33 LINK C MSE A 112 N TYR A 113 1555 1555 1.33 LINK C TYR A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N ILE A 115 1555 1555 1.33 LINK C SER A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N SER A 139 1555 1555 1.34 LINK C THR A 190 N MSE A 191 1555 1555 1.33 LINK C MSE A 191 N PRO A 192 1555 1555 1.33 LINK C ASP A 194 N MSE A 195 1555 1555 1.33 LINK C MSE A 195 N PRO A 196 1555 1555 1.33 LINK C TYR A 216 N MSE A 217 1555 1555 1.34 LINK C MSE A 217 N ASP A 218 1555 1555 1.33 LINK C GLY A 221 N MSE A 222 1555 1555 1.33 LINK C MSE A 222 N LEU A 223 1555 1555 1.34 LINK O ASP A 225 MG MG A 501 1555 1555 2.41 LINK OD2 ASP A 227 MG MG A 501 1555 1555 2.45 LINK O SER A 255 MG MG A 501 1555 1555 2.26 LINK O ASN A 257 MG MG A 501 1555 1555 2.46 LINK C TYR A 258 N MSE A 259 1555 1555 1.33 LINK C MSE A 259 N GLN A 260 1555 1555 1.33 LINK C THR A 267 N MSE A 268 1555 1555 1.33 LINK C MSE A 268 N ALA A 269 1555 1555 1.33 LINK C GLU A 316 N MSE A 317 1555 1555 1.33 LINK C MSE A 317 N LEU A 318 1555 1555 1.33 LINK C PRO A 329 N MSE A 330 1555 1555 1.31 LINK C MSE A 330 N GLN A 331 1555 1555 1.30 LINK C TYR A 374 N MSE A 375 1555 1555 1.33 LINK C MSE A 375 N PRO A 376 1555 1555 1.34 LINK OD1 ASP A 452 MG MG A 501 1555 1555 2.40 LINK OD2 ASP A 452 MG MG A 501 1555 1555 2.55 LINK MG MG A 501 O HOH A 623 1555 1555 2.02 CISPEP 1 ASN A 289 PRO A 290 0 1.17 SITE 1 AC1 6 ASP A 225 ASP A 227 SER A 255 ASN A 257 SITE 2 AC1 6 ASP A 452 HOH A 623 SITE 1 AC2 1 ASN A 360 SITE 1 AC3 3 TYR A 41 TRP A 242 HOH A 702 SITE 1 AC4 2 TYR A 42 ASN A 344 SITE 1 AC5 2 THR A 92 ASP A 93 SITE 1 AC6 2 SER A 336 GLN A 339 CRYST1 82.900 82.900 152.470 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012063 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006559 0.00000