HEADER TRANSCRIPTION 15-APR-18 6D3E TITLE PPARG LBD IN COMPLEX WITH SR1988 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN; COMPND 5 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TYPE 2 DIABETES, NUCLEAR RECEPTOR, DRUG DISCOVERY, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.L.FRKIC,J.B.BRUNING REVDAT 3 04-OCT-23 6D3E 1 JRNL REVDAT 2 10-APR-19 6D3E 1 JRNL REVDAT 1 27-FEB-19 6D3E 0 JRNL AUTH R.L.FRKIC,B.S.CHUA,Y.SHIN,B.D.PASCAL,S.J.NOVICK, JRNL AUTH 2 T.M.KAMENECKA,P.R.GRIFFIN,J.B.BRUNING JRNL TITL STRUCTURAL AND DYNAMIC ELUCIDATION OF A NON-ACID JRNL TITL 2 PPARGAMMAPARTIAL AGONIST: SR1988. JRNL REF NUCL RECEPTOR RES V. 5 2018 JRNL REFN ISSN 2314-5706 JRNL PMID 30906767 JRNL DOI 10.11131/2018/101350 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11_2567 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 25950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5478 - 4.9789 1.00 2877 144 0.1846 0.2609 REMARK 3 2 4.9789 - 3.9530 1.00 2810 140 0.1740 0.1932 REMARK 3 3 3.9530 - 3.4537 1.00 2780 146 0.1914 0.2747 REMARK 3 4 3.4537 - 3.1380 1.00 2770 150 0.2152 0.2622 REMARK 3 5 3.1380 - 2.9132 0.99 2755 149 0.2396 0.3106 REMARK 3 6 2.9132 - 2.7415 0.99 2776 119 0.2350 0.2617 REMARK 3 7 2.7415 - 2.6042 0.97 2700 141 0.2556 0.3452 REMARK 3 8 2.6042 - 2.4909 0.96 2646 148 0.2739 0.3273 REMARK 3 9 2.4909 - 2.3950 0.93 2551 148 0.2837 0.3246 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4315 REMARK 3 ANGLE : 0.420 5816 REMARK 3 CHIRALITY : 0.035 675 REMARK 3 PLANARITY : 0.004 732 REMARK 3 DIHEDRAL : 12.825 2652 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3991 15.2056 14.9591 REMARK 3 T TENSOR REMARK 3 T11: 0.2717 T22: 0.3975 REMARK 3 T33: 0.3829 T12: 0.0331 REMARK 3 T13: 0.0354 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 3.1414 L22: 1.5481 REMARK 3 L33: 4.4469 L12: -0.7647 REMARK 3 L13: -0.4548 L23: -0.2102 REMARK 3 S TENSOR REMARK 3 S11: -0.0983 S12: -0.0609 S13: -0.1754 REMARK 3 S21: 0.0405 S22: 0.1395 S23: 0.2904 REMARK 3 S31: -0.0458 S32: -0.4682 S33: -0.0502 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8452 33.2531 7.6498 REMARK 3 T TENSOR REMARK 3 T11: 0.5802 T22: 0.4140 REMARK 3 T33: 0.4483 T12: -0.0190 REMARK 3 T13: 0.0152 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.6613 L22: 0.3187 REMARK 3 L33: 3.4447 L12: 0.1001 REMARK 3 L13: -0.3878 L23: 0.3050 REMARK 3 S TENSOR REMARK 3 S11: -0.3337 S12: 0.3544 S13: 0.0865 REMARK 3 S21: -0.3346 S22: 0.1471 S23: -0.2102 REMARK 3 S31: -0.4560 S32: 0.1689 S33: 0.0592 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 303 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6915 18.2516 18.9430 REMARK 3 T TENSOR REMARK 3 T11: 0.3450 T22: 0.4068 REMARK 3 T33: 0.3834 T12: 0.1610 REMARK 3 T13: 0.0260 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.6283 L22: 1.7552 REMARK 3 L33: 3.0757 L12: 0.5517 REMARK 3 L13: -0.1157 L23: -0.1930 REMARK 3 S TENSOR REMARK 3 S11: -0.1816 S12: -0.1781 S13: -0.1970 REMARK 3 S21: 0.0483 S22: 0.0800 S23: -0.1721 REMARK 3 S31: 0.1020 S32: 0.4490 S33: 0.1193 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 476 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2015 25.6868 23.1838 REMARK 3 T TENSOR REMARK 3 T11: 0.5476 T22: 0.6392 REMARK 3 T33: 0.4954 T12: 0.1408 REMARK 3 T13: 0.0019 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 2.6920 L22: 3.1716 REMARK 3 L33: 1.2318 L12: 1.9657 REMARK 3 L13: -0.1653 L23: -0.5012 REMARK 3 S TENSOR REMARK 3 S11: 0.1930 S12: -0.5236 S13: -0.1548 REMARK 3 S21: 0.3178 S22: -0.0756 S23: -0.9569 REMARK 3 S31: -0.0406 S32: 0.6440 S33: -0.1008 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 206 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7682 -15.3738 26.5918 REMARK 3 T TENSOR REMARK 3 T11: 0.7747 T22: 0.3801 REMARK 3 T33: 0.5272 T12: 0.0605 REMARK 3 T13: 0.0876 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.5765 L22: 6.8872 REMARK 3 L33: 5.9017 L12: 0.4683 REMARK 3 L13: 2.3057 L23: -0.2772 REMARK 3 S TENSOR REMARK 3 S11: 0.3563 S12: 0.3814 S13: -0.9555 REMARK 3 S21: -0.5197 S22: -0.1400 S23: 0.2151 REMARK 3 S31: 1.0879 S32: -0.1329 S33: -0.2424 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 226 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7884 -2.9858 49.6851 REMARK 3 T TENSOR REMARK 3 T11: 0.8920 T22: 0.8278 REMARK 3 T33: 0.3953 T12: 0.0577 REMARK 3 T13: 0.0601 T23: 0.1156 REMARK 3 L TENSOR REMARK 3 L11: 5.3267 L22: 3.0553 REMARK 3 L33: 4.2991 L12: -0.3318 REMARK 3 L13: 2.9505 L23: 2.5220 REMARK 3 S TENSOR REMARK 3 S11: 0.3798 S12: -1.1067 S13: -0.3588 REMARK 3 S21: 0.5067 S22: -0.1099 S23: -0.2720 REMARK 3 S31: 0.1996 S32: 0.1522 S33: -0.1681 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 277 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7030 -0.3145 31.7015 REMARK 3 T TENSOR REMARK 3 T11: 0.4611 T22: 0.3468 REMARK 3 T33: 0.3898 T12: 0.1459 REMARK 3 T13: 0.0642 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.3361 L22: 1.9846 REMARK 3 L33: 4.0009 L12: 0.1293 REMARK 3 L13: -0.0332 L23: 0.0819 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: -0.1762 S13: -0.0395 REMARK 3 S21: 0.2601 S22: 0.0698 S23: 0.1297 REMARK 3 S31: -0.2513 S32: 0.1273 S33: -0.0513 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 431 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1571 9.1108 29.6787 REMARK 3 T TENSOR REMARK 3 T11: 0.5287 T22: 0.4807 REMARK 3 T33: 0.4591 T12: 0.0508 REMARK 3 T13: 0.0637 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 6.4196 L22: 5.5073 REMARK 3 L33: 4.8335 L12: 1.8369 REMARK 3 L13: 2.0332 L23: -0.0890 REMARK 3 S TENSOR REMARK 3 S11: 0.1771 S12: 0.4001 S13: 0.7835 REMARK 3 S21: 0.2344 S22: -0.0125 S23: 0.0531 REMARK 3 S31: -0.8002 S32: 0.5233 S33: -0.1585 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 456 THROUGH 476 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6735 7.3859 31.4705 REMARK 3 T TENSOR REMARK 3 T11: 1.1743 T22: 0.9166 REMARK 3 T33: 0.9434 T12: 0.0042 REMARK 3 T13: 0.2208 T23: -0.1160 REMARK 3 L TENSOR REMARK 3 L11: 0.4763 L22: 5.8903 REMARK 3 L33: 0.4672 L12: -0.1471 REMARK 3 L13: -0.4378 L23: -0.3322 REMARK 3 S TENSOR REMARK 3 S11: 0.1089 S12: -1.0291 S13: 0.7056 REMARK 3 S21: -0.3438 S22: -0.0586 S23: 0.5280 REMARK 3 S31: -0.9208 S32: 0.2262 S33: -0.1597 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26013 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.395 REMARK 200 RESOLUTION RANGE LOW (A) : 57.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 1.27600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R06 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M SODIUM CITRATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.52000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.25500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.52000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.25500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -46.52000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 31.25500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 GLY A 203 REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 HIS B 197 REMARK 465 HIS B 198 REMARK 465 HIS B 199 REMARK 465 HIS B 200 REMARK 465 HIS B 201 REMARK 465 HIS B 202 REMARK 465 GLY B 203 REMARK 465 SER B 204 REMARK 465 HIS B 205 REMARK 465 GLN B 271 REMARK 465 GLU B 272 REMARK 465 GLN B 273 REMARK 465 SER B 274 REMARK 465 ASP B 462 REMARK 465 MET B 463 REMARK 465 SER B 464 REMARK 465 LEU B 465 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 205 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 253 CG OD1 ND2 REMARK 470 LYS B 261 CG CD CE NZ REMARK 470 LYS B 263 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 241 -161.02 -128.15 REMARK 500 GLU A 460 69.96 -110.41 REMARK 500 ASP A 475 -107.06 55.97 REMARK 500 THR B 241 19.01 56.56 REMARK 500 ASP B 243 -114.54 54.73 REMARK 500 LYS B 244 44.02 35.09 REMARK 500 PRO B 269 86.03 -49.19 REMARK 500 LEU B 393 56.12 -94.72 REMARK 500 SER B 429 -72.54 -61.38 REMARK 500 GLN B 430 42.72 -109.53 REMARK 500 LYS B 457 -15.50 94.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 704 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 705 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A 706 DISTANCE = 6.53 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FT7 A 501 DBREF 6D3E A 207 476 UNP P37231 PPARG_HUMAN 235 504 DBREF 6D3E B 207 476 UNP P37231 PPARG_HUMAN 235 504 SEQADV 6D3E HIS A 197 UNP P37231 EXPRESSION TAG SEQADV 6D3E HIS A 198 UNP P37231 EXPRESSION TAG SEQADV 6D3E HIS A 199 UNP P37231 EXPRESSION TAG SEQADV 6D3E HIS A 200 UNP P37231 EXPRESSION TAG SEQADV 6D3E HIS A 201 UNP P37231 EXPRESSION TAG SEQADV 6D3E HIS A 202 UNP P37231 EXPRESSION TAG SEQADV 6D3E GLY A 203 UNP P37231 EXPRESSION TAG SEQADV 6D3E SER A 204 UNP P37231 EXPRESSION TAG SEQADV 6D3E HIS A 205 UNP P37231 EXPRESSION TAG SEQADV 6D3E MET A 206 UNP P37231 EXPRESSION TAG SEQADV 6D3E HIS B 197 UNP P37231 EXPRESSION TAG SEQADV 6D3E HIS B 198 UNP P37231 EXPRESSION TAG SEQADV 6D3E HIS B 199 UNP P37231 EXPRESSION TAG SEQADV 6D3E HIS B 200 UNP P37231 EXPRESSION TAG SEQADV 6D3E HIS B 201 UNP P37231 EXPRESSION TAG SEQADV 6D3E HIS B 202 UNP P37231 EXPRESSION TAG SEQADV 6D3E GLY B 203 UNP P37231 EXPRESSION TAG SEQADV 6D3E SER B 204 UNP P37231 EXPRESSION TAG SEQADV 6D3E HIS B 205 UNP P37231 EXPRESSION TAG SEQADV 6D3E MET B 206 UNP P37231 EXPRESSION TAG SEQRES 1 A 280 HIS HIS HIS HIS HIS HIS GLY SER HIS MET GLU SER ALA SEQRES 2 A 280 ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR ASP SER TYR SEQRES 3 A 280 ILE LYS SER PHE PRO LEU THR LYS ALA LYS ALA ARG ALA SEQRES 4 A 280 ILE LEU THR GLY LYS THR THR ASP LYS SER PRO PHE VAL SEQRES 5 A 280 ILE TYR ASP MET ASN SER LEU MET MET GLY GLU ASP LYS SEQRES 6 A 280 ILE LYS PHE LYS HIS ILE THR PRO LEU GLN GLU GLN SER SEQRES 7 A 280 LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY CYS GLN PHE SEQRES 8 A 280 ARG SER VAL GLU ALA VAL GLN GLU ILE THR GLU TYR ALA SEQRES 9 A 280 LYS SER ILE PRO GLY PHE VAL ASN LEU ASP LEU ASN ASP SEQRES 10 A 280 GLN VAL THR LEU LEU LYS TYR GLY VAL HIS GLU ILE ILE SEQRES 11 A 280 TYR THR MET LEU ALA SER LEU MET ASN LYS ASP GLY VAL SEQRES 12 A 280 LEU ILE SER GLU GLY GLN GLY PHE MET THR ARG GLU PHE SEQRES 13 A 280 LEU LYS SER LEU ARG LYS PRO PHE GLY ASP PHE MET GLU SEQRES 14 A 280 PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN ALA LEU GLU SEQRES 15 A 280 LEU ASP ASP SER ASP LEU ALA ILE PHE ILE ALA VAL ILE SEQRES 16 A 280 ILE LEU SER GLY ASP ARG PRO GLY LEU LEU ASN VAL LYS SEQRES 17 A 280 PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU GLN ALA LEU SEQRES 18 A 280 GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SER SER GLN SEQRES 19 A 280 LEU PHE ALA LYS LEU LEU GLN LYS MET THR ASP LEU ARG SEQRES 20 A 280 GLN ILE VAL THR GLU HIS VAL GLN LEU LEU GLN VAL ILE SEQRES 21 A 280 LYS LYS THR GLU THR ASP MET SER LEU HIS PRO LEU LEU SEQRES 22 A 280 GLN GLU ILE TYR LYS ASP LEU SEQRES 1 B 280 HIS HIS HIS HIS HIS HIS GLY SER HIS MET GLU SER ALA SEQRES 2 B 280 ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR ASP SER TYR SEQRES 3 B 280 ILE LYS SER PHE PRO LEU THR LYS ALA LYS ALA ARG ALA SEQRES 4 B 280 ILE LEU THR GLY LYS THR THR ASP LYS SER PRO PHE VAL SEQRES 5 B 280 ILE TYR ASP MET ASN SER LEU MET MET GLY GLU ASP LYS SEQRES 6 B 280 ILE LYS PHE LYS HIS ILE THR PRO LEU GLN GLU GLN SER SEQRES 7 B 280 LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY CYS GLN PHE SEQRES 8 B 280 ARG SER VAL GLU ALA VAL GLN GLU ILE THR GLU TYR ALA SEQRES 9 B 280 LYS SER ILE PRO GLY PHE VAL ASN LEU ASP LEU ASN ASP SEQRES 10 B 280 GLN VAL THR LEU LEU LYS TYR GLY VAL HIS GLU ILE ILE SEQRES 11 B 280 TYR THR MET LEU ALA SER LEU MET ASN LYS ASP GLY VAL SEQRES 12 B 280 LEU ILE SER GLU GLY GLN GLY PHE MET THR ARG GLU PHE SEQRES 13 B 280 LEU LYS SER LEU ARG LYS PRO PHE GLY ASP PHE MET GLU SEQRES 14 B 280 PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN ALA LEU GLU SEQRES 15 B 280 LEU ASP ASP SER ASP LEU ALA ILE PHE ILE ALA VAL ILE SEQRES 16 B 280 ILE LEU SER GLY ASP ARG PRO GLY LEU LEU ASN VAL LYS SEQRES 17 B 280 PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU GLN ALA LEU SEQRES 18 B 280 GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SER SER GLN SEQRES 19 B 280 LEU PHE ALA LYS LEU LEU GLN LYS MET THR ASP LEU ARG SEQRES 20 B 280 GLN ILE VAL THR GLU HIS VAL GLN LEU LEU GLN VAL ILE SEQRES 21 B 280 LYS LYS THR GLU THR ASP MET SER LEU HIS PRO LEU LEU SEQRES 22 B 280 GLN GLU ILE TYR LYS ASP LEU HET FT7 A 501 32 HETNAM FT7 1-[(2,4-DIFLUOROPHENYL)METHYL]-2,3-DIMETHYL-N-[(1R)-1- HETNAM 2 FT7 PHENYLPROPYL]-1H-INDOLE-5-CARBOXAMIDE FORMUL 3 FT7 C27 H26 F2 N2 O FORMUL 4 HOH *177(H2 O) HELIX 1 AA1 HIS A 205 PHE A 226 1 22 HELIX 2 AA2 THR A 229 THR A 238 1 10 HELIX 3 AA3 ASP A 251 GLY A 258 1 8 HELIX 4 AA4 GLU A 276 SER A 302 1 27 HELIX 5 AA5 ASP A 310 ALA A 331 1 22 HELIX 6 AA6 SER A 332 MET A 334 5 3 HELIX 7 AA7 SER A 342 GLY A 344 5 3 HELIX 8 AA8 ARG A 350 SER A 355 1 6 HELIX 9 AA9 PRO A 359 PHE A 363 5 5 HELIX 10 AB1 MET A 364 ALA A 376 1 13 HELIX 11 AB2 ASP A 380 LEU A 393 1 14 HELIX 12 AB3 ASN A 402 HIS A 425 1 24 HELIX 13 AB4 GLN A 430 LYS A 438 1 9 HELIX 14 AB5 LYS A 438 GLU A 460 1 23 HELIX 15 AB6 HIS A 466 LYS A 474 1 9 HELIX 16 AB7 GLU B 207 PHE B 226 1 20 HELIX 17 AB8 THR B 229 GLY B 239 1 11 HELIX 18 AB9 ASP B 251 ILE B 262 1 12 HELIX 19 AC1 GLU B 276 ILE B 303 1 28 HELIX 20 AC2 ASP B 310 TYR B 320 1 11 HELIX 21 AC3 GLY B 321 ALA B 331 1 11 HELIX 22 AC4 ARG B 350 SER B 355 1 6 HELIX 23 AC5 MET B 364 ASN B 375 1 12 HELIX 24 AC6 ALA B 376 GLU B 378 5 3 HELIX 25 AC7 ASP B 380 LEU B 393 1 14 HELIX 26 AC8 ASN B 402 HIS B 425 1 24 HELIX 27 AC9 GLN B 430 ILE B 456 1 27 HELIX 28 AD1 PRO B 467 TYR B 473 1 7 SHEET 1 AA1 3 PHE A 247 ILE A 249 0 SHEET 2 AA1 3 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 AA1 3 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 1 AA2 4 PHE B 247 ILE B 249 0 SHEET 2 AA2 4 GLY B 346 THR B 349 1 O THR B 349 N ILE B 249 SHEET 3 AA2 4 GLY B 338 ILE B 341 -1 N VAL B 339 O MET B 348 SHEET 4 AA2 4 MET B 334 ASN B 335 -1 N ASN B 335 O GLY B 338 CISPEP 1 LYS A 358 PRO A 359 0 -2.10 CISPEP 2 LYS B 358 PRO B 359 0 -1.18 SITE 1 AC1 13 CYS A 285 GLN A 286 ARG A 288 SER A 289 SITE 2 AC1 13 HIS A 323 ILE A 326 TYR A 327 LEU A 330 SITE 3 AC1 13 ILE A 341 MET A 364 HIS A 449 LEU A 469 SITE 4 AC1 13 TYR A 473 CRYST1 93.040 62.510 118.650 90.00 102.32 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010748 0.000000 0.002347 0.00000 SCALE2 0.000000 0.015997 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008627 0.00000