HEADER OXIDOREDUCTASE 16-APR-18 6D3J TITLE FT_T DIOXYGENASE HOLOENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: FT_T DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM HERBICIDOVORANS; SOURCE 3 ORGANISM_TAXID: 76947; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE;, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.J.RYDEL,C.E.HALLS REVDAT 4 13-MAR-24 6D3J 1 REMARK LINK REVDAT 3 17-JUL-19 6D3J 1 JRNL REVDAT 2 27-MAR-19 6D3J 1 JRNL REVDAT 1 15-AUG-18 6D3J 0 JRNL AUTH C.T.LARUE,M.GOLEY,L.SHI,A.G.EVDOKIMOV,O.C.SPARKS,C.ELLIS, JRNL AUTH 2 A.M.WOLLACOTT,T.J.RYDEL,C.E.HALLS,B.VAN SCOYOC,X.FU, JRNL AUTH 3 J.R.NAGEOTTE,A.M.ADIO,M.ZHENG,E.J.STURMAN,G.S.GARVEY, JRNL AUTH 4 M.J.VARAGONA JRNL TITL DEVELOPMENT OF ENZYMES FOR ROBUST ARYLOXYPHENOXYPROPIONATE JRNL TITL 2 AND SYNTHETIC AUXIN HERBICIDE TOLERANCE TRAITS IN MAIZE AND JRNL TITL 3 SOYBEAN CROPS. JRNL REF PEST MANAG. SCI. V. 75 2086 2019 JRNL REFN ISSN 1526-4998 JRNL PMID 30828945 JRNL DOI 10.1002/PS.5393 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 119.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 8483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 423 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 602 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1975 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75000 REMARK 3 B22 (A**2) : -0.75000 REMARK 3 B33 (A**2) : 2.42000 REMARK 3 B12 (A**2) : -0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.198 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.406 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.296 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.813 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2036 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1840 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2772 ; 2.221 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4260 ; 1.251 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 244 ; 8.275 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;37.148 ;23.438 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 322 ;21.551 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.207 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 306 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2256 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 430 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 985 ; 3.475 ; 5.569 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 984 ; 3.475 ; 5.570 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1226 ; 5.472 ; 8.341 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1227 ; 5.470 ; 8.340 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1051 ; 3.686 ; 5.941 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1047 ; 3.692 ; 5.951 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1542 ; 5.832 ; 8.782 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2235 ; 7.998 ;63.695 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2233 ; 7.999 ;63.697 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0690 -32.6070 1.9170 REMARK 3 T TENSOR REMARK 3 T11: 0.3227 T22: 0.4444 REMARK 3 T33: 0.2555 T12: -0.0151 REMARK 3 T13: 0.1281 T23: 0.1967 REMARK 3 L TENSOR REMARK 3 L11: 0.6733 L22: 2.4997 REMARK 3 L33: 1.3030 L12: -0.7270 REMARK 3 L13: 0.3687 L23: -0.8777 REMARK 3 S TENSOR REMARK 3 S11: 0.1306 S12: 0.1339 S13: 0.0957 REMARK 3 S21: -0.0280 S22: 0.1131 S23: 0.2023 REMARK 3 S31: -0.1426 S32: -0.2383 S33: -0.2437 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0440 -38.1660 -2.7340 REMARK 3 T TENSOR REMARK 3 T11: 0.3770 T22: 0.4945 REMARK 3 T33: 0.5854 T12: -0.0902 REMARK 3 T13: 0.0562 T23: 0.1144 REMARK 3 L TENSOR REMARK 3 L11: 0.5822 L22: 0.1678 REMARK 3 L33: 2.4584 L12: 0.2912 REMARK 3 L13: -0.9305 L23: -0.4080 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: -0.1178 S13: 0.1065 REMARK 3 S21: -0.0349 S22: -0.0355 S23: 0.1603 REMARK 3 S31: -0.3279 S32: 0.6124 S33: 0.0916 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 302 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2480 -36.7630 -2.6160 REMARK 3 T TENSOR REMARK 3 T11: 1.3497 T22: 1.1678 REMARK 3 T33: 0.8907 T12: -0.0037 REMARK 3 T13: 0.1235 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 21.2401 L22: 196.0538 REMARK 3 L33: 153.9184 L12: 64.5244 REMARK 3 L13: 57.1732 L23: 173.7127 REMARK 3 S TENSOR REMARK 3 S11: -0.4899 S12: 0.2731 S13: -0.1611 REMARK 3 S21: -1.6913 S22: 0.9347 S23: -0.4926 REMARK 3 S31: -1.4788 S32: 0.8051 S33: -0.4448 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 308 A 309 REMARK 3 ORIGIN FOR THE GROUP (A): 37.3370 -54.3810 2.4820 REMARK 3 T TENSOR REMARK 3 T11: 0.5152 T22: 0.5186 REMARK 3 T33: 0.5031 T12: -0.1336 REMARK 3 T13: -0.1019 T23: 0.1218 REMARK 3 L TENSOR REMARK 3 L11: 6.6048 L22: 3.0413 REMARK 3 L33: 6.1027 L12: -0.1875 REMARK 3 L13: 4.6169 L23: -2.8722 REMARK 3 S TENSOR REMARK 3 S11: -0.0968 S12: 0.0786 S13: 0.6516 REMARK 3 S21: -0.4860 S22: -0.1933 S23: -0.1026 REMARK 3 S31: 0.7128 S32: -0.1074 S33: 0.2901 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 28.7900 -39.4860 -4.5540 REMARK 3 T TENSOR REMARK 3 T11: 0.3542 T22: 0.5809 REMARK 3 T33: 0.3291 T12: 0.1258 REMARK 3 T13: 0.0370 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 3.1552 L22: 1.2674 REMARK 3 L33: 1.5938 L12: 0.0911 REMARK 3 L13: -1.9295 L23: -0.7580 REMARK 3 S TENSOR REMARK 3 S11: -0.1029 S12: 0.3971 S13: 0.0634 REMARK 3 S21: 0.1959 S22: 0.0382 S23: -0.1980 REMARK 3 S31: -0.0681 S32: -0.3696 S33: 0.0647 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 303 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1660 -19.4930 -6.6440 REMARK 3 T TENSOR REMARK 3 T11: 0.7801 T22: 0.6098 REMARK 3 T33: 0.5412 T12: -0.1604 REMARK 3 T13: 0.1327 T23: 0.1565 REMARK 3 L TENSOR REMARK 3 L11: 7.8503 L22: 8.8618 REMARK 3 L33: 10.9622 L12: -7.5278 REMARK 3 L13: 7.4348 L23: -9.6272 REMARK 3 S TENSOR REMARK 3 S11: 0.7146 S12: 1.2993 S13: 0.5908 REMARK 3 S21: -0.2119 S22: -0.8359 S23: -0.2504 REMARK 3 S31: -0.3091 S32: 0.7737 S33: 0.1213 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 310 A 313 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6860 -42.5430 7.7650 REMARK 3 T TENSOR REMARK 3 T11: 0.7858 T22: 0.8858 REMARK 3 T33: 1.3303 T12: -0.0753 REMARK 3 T13: 0.0624 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 7.6602 L22: 16.3808 REMARK 3 L33: 9.5489 L12: -11.0650 REMARK 3 L13: 4.4338 L23: -8.0074 REMARK 3 S TENSOR REMARK 3 S11: -0.4776 S12: -0.2496 S13: 1.2425 REMARK 3 S21: 0.8891 S22: 0.5882 S23: -1.5793 REMARK 3 S31: -0.7361 S32: -0.6864 S33: -0.1105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6D3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8906 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 119.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 39.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT SOLUTION: 2.5 M NACL, 0.1M REMARK 280 KP04/NAP04-PH 6.2; PROTEIN SOLUTION: 10-20 MG/ML IN 30 MM TRIS-8, REMARK 280 0.2 M NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.84067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.42033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.84067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.42033 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.84067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 25.42033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.84067 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.42033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -307.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 68.70650 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -119.00315 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 25.42033 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 68.70650 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 -119.00315 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 25.42033 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 LEU A 5 REMARK 465 THR A 6 REMARK 465 PRO A 7 REMARK 465 LEU A 8 REMARK 465 THR A 9 REMARK 465 ARG A 97 REMARK 465 GLU A 98 REMARK 465 ALA A 99 REMARK 465 ASN A 100 REMARK 465 GLU A 101 REMARK 465 SER A 102 REMARK 465 SER A 103 REMARK 465 ARG A 104 REMARK 465 PHE A 105 REMARK 465 THR A 168 REMARK 465 LYS A 169 REMARK 465 VAL A 170 REMARK 465 PHE A 171 REMARK 465 GLY A 172 REMARK 465 SER A 173 REMARK 465 LEU A 174 REMARK 465 TYR A 175 REMARK 465 GLN A 176 REMARK 465 ALA A 177 REMARK 465 THR A 178 REMARK 465 ASN A 179 REMARK 465 TRP A 180 REMARK 465 ARG A 181 REMARK 465 PHE A 182 REMARK 465 SER A 183 REMARK 465 ASN A 184 REMARK 465 THR A 185 REMARK 465 SER A 186 REMARK 465 VAL A 187 REMARK 465 LYS A 188 REMARK 465 VAL A 189 REMARK 465 MET A 190 REMARK 465 ASP A 191 REMARK 465 VAL A 192 REMARK 465 ASP A 193 REMARK 465 ALA A 194 REMARK 465 GLY A 195 REMARK 465 ASP A 196 REMARK 465 ARG A 197 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CO CO A 301 O2 AKG A 302 1.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 110 CB TRP A 110 CG -0.118 REMARK 500 GLU A 242 CG GLU A 242 CD 0.122 REMARK 500 GLU A 242 CD GLU A 242 OE2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 252 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 254 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 23 -50.42 -126.04 REMARK 500 PHE A 49 -36.13 -33.22 REMARK 500 GLN A 53 -32.49 78.65 REMARK 500 ILE A 82 -160.76 82.22 REMARK 500 LEU A 83 -32.91 71.90 REMARK 500 LYS A 84 110.91 69.90 REMARK 500 ILE A 129 -81.62 -91.91 REMARK 500 LYS A 257 129.76 -22.25 REMARK 500 ALA A 277 110.35 -36.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 301 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 NE2 REMARK 620 2 ASP A 113 OD2 85.7 REMARK 620 3 HIS A 270 NE2 100.2 93.9 REMARK 620 4 AKG A 302 C2 114.0 158.4 91.2 REMARK 620 5 AKG A 302 O5 87.0 159.9 105.8 28.6 REMARK 620 6 AKG A 302 C1 146.5 123.0 94.9 35.5 60.1 REMARK 620 7 HOH A 401 O 76.9 91.3 173.9 85.1 68.8 84.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 313 DBREF 6D3J A 1 295 PDB 6D3J 6D3J 1 295 SEQRES 1 A 295 MET HIS ALA ALA LEU THR PRO LEU THR ASN LYS TYR ARG SEQRES 2 A 295 PHE ILE ASP VAL GLN PRO LEU THR GLY VAL LEU GLY ALA SEQRES 3 A 295 GLU ILE THR GLY VAL ASP LEU ARG GLU PRO LEU ASP ASP SEQRES 4 A 295 SER THR TRP ASN GLU ILE LEU ASP ALA PHE HIS THR TYR SEQRES 5 A 295 GLN VAL ILE TYR PHE PRO GLY GLN ALA ILE THR ASN GLU SEQRES 6 A 295 GLN HIS ILE ALA PHE SER ARG ARG PHE GLY PRO VAL ASP SEQRES 7 A 295 PRO VAL PRO ILE LEU LYS SER ILE GLU GLY TYR PRO GLU SEQRES 8 A 295 VAL GLN MET ILE ARG ARG GLU ALA ASN GLU SER SER ARG SEQRES 9 A 295 PHE ILE GLY ASP ASP TRP HIS THR ASP SER THR PHE LEU SEQRES 10 A 295 ASP ALA PRO PRO ALA ALA VAL VAL MET ARG ALA ILE GLU SEQRES 11 A 295 VAL PRO GLU TYR GLY GLY ASP THR GLY PHE LEU SER MET SEQRES 12 A 295 TYR SER ALA TRP GLU THR LEU SER PRO THR MET GLN ALA SEQRES 13 A 295 THR ILE GLU GLY LEU ASN VAL VAL HIS SER ALA THR LYS SEQRES 14 A 295 VAL PHE GLY SER LEU TYR GLN ALA THR ASN TRP ARG PHE SEQRES 15 A 295 SER ASN THR SER VAL LYS VAL MET ASP VAL ASP ALA GLY SEQRES 16 A 295 ASP ARG GLU THR VAL HIS PRO LEU VAL VAL THR HIS PRO SEQRES 17 A 295 VAL THR GLY ARG ARG ALA LEU TYR CYS ASN GLN VAL TYR SEQRES 18 A 295 CYS GLN LYS ILE GLN GLY MET THR ASP ALA GLU SER LYS SEQRES 19 A 295 SER LEU LEU GLN PHE LEU TYR GLU HIS ALA THR LYS PHE SEQRES 20 A 295 ASP PHE THR CYS ARG VAL ARG TRP LYS LYS ASP GLN VAL SEQRES 21 A 295 LEU VAL TRP ASP ASN LEU CYS THR MET HIS ARG ALA VAL SEQRES 22 A 295 PRO ASP TYR ALA GLY LYS PHE ARG TYR LEU THR ARG THR SEQRES 23 A 295 THR VAL ALA GLY ASP LYS PRO SER ARG HET CO A 301 1 HET AKG A 302 10 HET CO A 303 1 HET CO A 304 1 HET CO A 305 1 HET CO A 306 1 HET CO A 307 1 HET CO A 308 1 HET CO A 309 1 HET CO A 310 1 HET CO A 311 1 HET CO A 312 1 HET CO A 313 1 HETNAM CO COBALT (II) ION HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 2 CO 12(CO 2+) FORMUL 3 AKG C5 H6 O5 FORMUL 15 HOH *(H2 O) HELIX 1 AA1 ASP A 38 GLN A 53 1 16 HELIX 2 AA2 THR A 63 ARG A 73 1 11 HELIX 3 AA3 MET A 143 THR A 149 1 7 HELIX 4 AA4 SER A 151 GLU A 159 1 9 HELIX 5 AA5 THR A 229 THR A 245 1 17 HELIX 6 AA6 LYS A 246 ASP A 248 5 3 SHEET 1 AA1 7 ASP A 16 PRO A 19 0 SHEET 2 AA1 7 ALA A 26 THR A 29 -1 O GLU A 27 N GLN A 18 SHEET 3 AA1 7 VAL A 54 PHE A 57 1 O TYR A 56 N ILE A 28 SHEET 4 AA1 7 VAL A 260 ASP A 264 -1 O VAL A 262 N ILE A 55 SHEET 5 AA1 7 ALA A 123 GLU A 130 -1 N MET A 126 O LEU A 261 SHEET 6 AA1 7 TYR A 282 VAL A 288 -1 O TYR A 282 N GLU A 130 SHEET 7 AA1 7 VAL A 77 ASP A 78 -1 N ASP A 78 O THR A 287 SHEET 1 AA2 7 ASP A 16 PRO A 19 0 SHEET 2 AA2 7 ALA A 26 THR A 29 -1 O GLU A 27 N GLN A 18 SHEET 3 AA2 7 VAL A 54 PHE A 57 1 O TYR A 56 N ILE A 28 SHEET 4 AA2 7 VAL A 260 ASP A 264 -1 O VAL A 262 N ILE A 55 SHEET 5 AA2 7 ALA A 123 GLU A 130 -1 N MET A 126 O LEU A 261 SHEET 6 AA2 7 TYR A 282 VAL A 288 -1 O TYR A 282 N GLU A 130 SHEET 7 AA2 7 VAL A 92 ILE A 95 -1 N GLN A 93 O ARG A 285 SHEET 1 AA3 3 THR A 250 VAL A 253 0 SHEET 2 AA3 3 THR A 138 SER A 142 -1 N THR A 138 O VAL A 253 SHEET 3 AA3 3 THR A 268 ALA A 272 -1 O ARG A 271 N GLY A 139 SHEET 1 AA4 3 THR A 199 PRO A 202 0 SHEET 2 AA4 3 ASN A 162 HIS A 165 -1 N VAL A 163 O HIS A 201 SHEET 3 AA4 3 CYS A 222 ILE A 225 -1 O LYS A 224 N VAL A 164 SHEET 1 AA5 2 VAL A 204 THR A 206 0 SHEET 2 AA5 2 ARG A 213 LEU A 215 -1 O ALA A 214 N VAL A 205 LINK OD2 ASP A 16 CO CO A 303 1555 1555 2.41 LINK OE1 GLU A 35 CO CO A 304 1555 1555 2.32 LINK OD2 ASP A 108 CO CO A 311 1555 1555 2.77 LINK NE2 HIS A 111 CO CO A 301 1555 1555 2.22 LINK OD2 ASP A 113 CO CO A 301 1555 1555 2.16 LINK OD1 ASP A 118 CO CO A 307 1555 1555 2.74 LINK OE2 GLU A 242 CO CO A 309 1555 1555 2.80 LINK OE2 GLU A 242 CO CO A 312 1555 1555 2.70 LINK NE2 HIS A 270 CO CO A 301 1555 1555 2.29 LINK CO CO A 301 C2 AKG A 302 1555 1555 2.54 LINK CO CO A 301 O5 AKG A 302 1555 1555 2.35 LINK CO CO A 301 C1 AKG A 302 1555 1555 2.22 LINK CO CO A 301 O HOH A 401 1555 1555 2.19 SITE 1 AC1 5 HIS A 111 ASP A 113 HIS A 270 AKG A 302 SITE 2 AC1 5 HOH A 401 SITE 1 AC2 9 HIS A 111 ASP A 113 THR A 138 TRP A 263 SITE 2 AC2 9 HIS A 270 ARG A 281 ARG A 285 CO A 301 SITE 3 AC2 9 HOH A 401 SITE 1 AC3 1 ASP A 16 SITE 1 AC4 2 GLU A 35 CO A 305 SITE 1 AC5 2 GLU A 65 CO A 304 SITE 1 AC6 3 ARG A 72 PRO A 76 VAL A 77 SITE 1 AC7 2 ASP A 118 GLU A 198 SITE 1 AC8 1 ASP A 230 SITE 1 AC9 1 GLU A 242 SITE 1 AD1 1 GLU A 27 SITE 1 AD2 2 ASP A 108 ASP A 109 SITE 1 AD3 1 GLU A 242 SITE 1 AD4 1 GLU A 242 CRYST1 137.413 137.413 76.261 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007277 0.004202 0.000000 0.00000 SCALE2 0.000000 0.008403 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013113 0.00000