HEADER TRANSFERASE 16-APR-18 6D3L TITLE CRYSTAL STRUCTURE OF UNPHOSPHORYLATED HUMAN PKR COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON-INDUCED, DOUBLE-STRANDED RNA-ACTIVATED PROTEIN COMPND 3 KINASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: KINASE DOMAIN (229-551); COMPND 6 SYNONYM: EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE 2, COMPND 7 EIF-2A PROTEIN KINASE 2, INTERFERON-INDUCIBLE RNA-DEPENDENT PROTEIN COMPND 8 KINASE, P1/EIF-2A PROTEIN KINASE, PROTEIN KINASE RNA-ACTIVATED, COMPND 9 PROTEIN KINASE R, TYROSINE-PROTEIN KINASE EIF2AK2, P68 KINASE; COMPND 10 EC: 2.7.11.1,2.7.10.2; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EIF2AK2, PKR, PRKR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UNPHOSPHORYLATED, KINASE, ACTIVATION LOOP SWAPPING, APO, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.ERLANDSEN,C.MAYO,V.L.ROBINSON,J.L.COLE REVDAT 4 04-OCT-23 6D3L 1 REMARK REVDAT 3 18-DEC-19 6D3L 1 REMARK REVDAT 2 24-JUL-19 6D3L 1 JRNL REVDAT 1 10-JUL-19 6D3L 0 JRNL AUTH C.B.MAYO,H.ERLANDSEN,D.J.MOUSER,A.G.FEINSTEIN,V.L.ROBINSON, JRNL AUTH 2 E.R.MAY,J.L.COLE JRNL TITL STRUCTURAL BASIS OF PROTEIN KINASE R AUTOPHOSPHORYLATION. JRNL REF BIOCHEMISTRY V. 58 2967 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31246429 JRNL DOI 10.1021/ACS.BIOCHEM.9B00161 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 123.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 5801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.347 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 296 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 410 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3830 REMARK 3 BIN FREE R VALUE SET COUNT : 16 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2014 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 0.95000 REMARK 3 B12 (A**2) : -0.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.650 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.573 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.802 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.812 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2082 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2045 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2793 ; 1.560 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4720 ; 1.016 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 250 ; 7.974 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;43.566 ;24.421 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 407 ;20.655 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;22.154 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 312 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2277 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 462 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6D3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233850. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978971 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.28 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6130 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 123.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.90 REMARK 200 R MERGE (I) : 0.25900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.30 REMARK 200 R MERGE FOR SHELL (I) : 1.13300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2A19 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, PH 5.5, 2.0 M AMMONIUM REMARK 280 SULFATE, 1:3 MOLAR RATIO OF DP8 (HEPARIN) WAS ADDED TO PROTEIN REMARK 280 PRIOR TO CRYSTALLIZATION, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.10833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.21667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.66250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 102.77083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.55417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.10833 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 82.21667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 102.77083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.66250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 20.55417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.10833 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 46.34450 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -80.27103 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 20.55417 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 229 REMARK 465 ASN A 230 REMARK 465 GLY A 231 REMARK 465 LEU A 232 REMARK 465 ARG A 233 REMARK 465 ASN A 234 REMARK 465 ASN A 235 REMARK 465 GLN A 236 REMARK 465 ARG A 237 REMARK 465 LYS A 238 REMARK 465 ALA A 239 REMARK 465 LYS A 240 REMARK 465 ARG A 241 REMARK 465 SER A 242 REMARK 465 LEU A 243 REMARK 465 ALA A 244 REMARK 465 PRO A 245 REMARK 465 ARG A 246 REMARK 465 PHE A 247 REMARK 465 ASP A 248 REMARK 465 LEU A 249 REMARK 465 PRO A 250 REMARK 465 ASP A 251 REMARK 465 MET A 252 REMARK 465 LYS A 253 REMARK 465 GLU A 254 REMARK 465 THR A 255 REMARK 465 LYS A 256 REMARK 465 TYR A 257 REMARK 465 SER A 337 REMARK 465 ASP A 338 REMARK 465 ASP A 339 REMARK 465 SER A 340 REMARK 465 LEU A 341 REMARK 465 GLU A 342 REMARK 465 SER A 343 REMARK 465 SER A 344 REMARK 465 ASP A 345 REMARK 465 TYR A 346 REMARK 465 ASP A 347 REMARK 465 PRO A 348 REMARK 465 GLU A 349 REMARK 465 ASN A 350 REMARK 465 SER A 351 REMARK 465 LYS A 352 REMARK 465 ASN A 353 REMARK 465 SER A 354 REMARK 465 SER A 355 REMARK 465 LYS A 440 REMARK 465 ASN A 441 REMARK 465 ASP A 442 REMARK 465 GLY A 443 REMARK 465 LYS A 444 REMARK 465 ARG A 445 REMARK 465 THR A 446 REMARK 465 ARG A 447 REMARK 465 SER A 448 REMARK 465 LYS A 449 REMARK 465 GLY A 450 REMARK 465 THR A 451 REMARK 465 LEU A 452 REMARK 465 ARG A 453 REMARK 465 TYR A 454 REMARK 465 MET A 455 REMARK 465 SER A 456 REMARK 465 SER A 542 REMARK 465 PRO A 543 REMARK 465 GLU A 544 REMARK 465 LYS A 545 REMARK 465 ASN A 546 REMARK 465 GLU A 547 REMARK 465 ARG A 548 REMARK 465 HIS A 549 REMARK 465 THR A 550 REMARK 465 CYS A 551 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 335 CG CD OE1 OE2 REMARK 470 SER A 357 OG REMARK 470 LYS A 358 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ILE A 460 NH1 ARG A 499 12545 2.11 REMARK 500 O ILE A 460 NH2 ARG A 499 12545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 259 58.47 -149.93 REMARK 500 TYR A 300 59.97 -99.58 REMARK 500 ASN A 301 -144.13 -67.23 REMARK 500 ASN A 302 -179.40 -65.74 REMARK 500 GLU A 303 54.33 -55.81 REMARK 500 ALA A 311 -76.68 -70.60 REMARK 500 LEU A 312 -39.06 -33.41 REMARK 500 TYR A 332 120.39 -32.10 REMARK 500 LYS A 371 49.13 -87.13 REMARK 500 LEU A 386 103.74 -48.82 REMARK 500 HIS A 412 76.87 -109.72 REMARK 500 ASP A 424 -67.72 168.72 REMARK 500 ASP A 432 79.38 -150.13 REMARK 500 PHE A 433 34.50 -93.22 REMARK 500 LEU A 435 60.24 -119.51 REMARK 500 SER A 438 159.47 -41.89 REMARK 500 GLU A 458 68.89 25.29 REMARK 500 GLN A 459 45.47 -57.73 REMARK 500 ILE A 460 -168.87 -128.23 REMARK 500 SER A 461 21.43 -153.59 REMARK 500 SER A 462 -131.22 -99.76 REMARK 500 GLN A 463 -155.58 -140.28 REMARK 500 ASP A 464 43.85 -171.87 REMARK 500 LYS A 467 -146.08 -175.40 REMARK 500 ILE A 502 89.12 -67.49 REMARK 500 ILE A 506 -46.13 -28.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 6D3L A 229 551 UNP P19525 E2AK2_HUMAN 229 551 SEQRES 1 A 323 MET ASN GLY LEU ARG ASN ASN GLN ARG LYS ALA LYS ARG SEQRES 2 A 323 SER LEU ALA PRO ARG PHE ASP LEU PRO ASP MET LYS GLU SEQRES 3 A 323 THR LYS TYR THR VAL ASP LYS ARG PHE GLY MET ASP PHE SEQRES 4 A 323 LYS GLU ILE GLU LEU ILE GLY SER GLY GLY PHE GLY GLN SEQRES 5 A 323 VAL PHE LYS ALA LYS HIS ARG ILE ASP GLY LYS THR TYR SEQRES 6 A 323 VAL ILE LYS ARG VAL LYS TYR ASN ASN GLU LYS ALA GLU SEQRES 7 A 323 ARG GLU VAL LYS ALA LEU ALA LYS LEU ASP HIS VAL ASN SEQRES 8 A 323 ILE VAL HIS TYR ASN GLY CYS TRP ASP GLY PHE ASP TYR SEQRES 9 A 323 ASP PRO GLU THR SER ASP ASP SER LEU GLU SER SER ASP SEQRES 10 A 323 TYR ASP PRO GLU ASN SER LYS ASN SER SER ARG SER LYS SEQRES 11 A 323 THR LYS CYS LEU PHE ILE GLN MET GLU PHE CYS ASP LYS SEQRES 12 A 323 GLY THR LEU GLU GLN TRP ILE GLU LYS ARG ARG GLY GLU SEQRES 13 A 323 LYS LEU ASP LYS VAL LEU ALA LEU GLU LEU PHE GLU GLN SEQRES 14 A 323 ILE THR LYS GLY VAL ASP TYR ILE HIS SER LYS LYS LEU SEQRES 15 A 323 ILE HIS ARG ASP LEU LYS PRO SER ASN ILE PHE LEU VAL SEQRES 16 A 323 ASP THR LYS GLN VAL LYS ILE GLY ASP PHE GLY LEU VAL SEQRES 17 A 323 THR SER LEU LYS ASN ASP GLY LYS ARG THR ARG SER LYS SEQRES 18 A 323 GLY THR LEU ARG TYR MET SER PRO GLU GLN ILE SER SER SEQRES 19 A 323 GLN ASP TYR GLY LYS GLU VAL ASP LEU TYR ALA LEU GLY SEQRES 20 A 323 LEU ILE LEU ALA GLU LEU LEU HIS VAL CYS ASP THR ALA SEQRES 21 A 323 PHE GLU THR SER LYS PHE PHE THR ASP LEU ARG ASP GLY SEQRES 22 A 323 ILE ILE SER ASP ILE PHE ASP LYS LYS GLU LYS THR LEU SEQRES 23 A 323 LEU GLN LYS LEU LEU SER LYS LYS PRO GLU ASP ARG PRO SEQRES 24 A 323 ASN THR SER GLU ILE LEU ARG THR LEU THR VAL TRP LYS SEQRES 25 A 323 LYS SER PRO GLU LYS ASN GLU ARG HIS THR CYS HELIX 1 AA1 ASP A 260 ASP A 266 1 7 HELIX 2 AA2 ALA A 305 ALA A 313 1 9 HELIX 3 AA3 THR A 373 LYS A 380 1 8 HELIX 4 AA4 VAL A 389 LYS A 408 1 20 HELIX 5 AA5 ASP A 432 GLY A 434 5 3 HELIX 6 AA6 VAL A 469 LEU A 482 1 14 HELIX 7 AA7 ALA A 488 GLY A 501 1 14 HELIX 8 AA8 ASP A 508 LEU A 519 1 12 HELIX 9 AA9 ASN A 528 TRP A 539 1 12 SHEET 1 AA1 5 PHE A 267 SER A 275 0 SHEET 2 AA1 5 GLY A 279 HIS A 286 -1 O LYS A 283 N GLU A 271 SHEET 3 AA1 5 LYS A 291 LYS A 299 -1 O ILE A 295 N PHE A 282 SHEET 4 AA1 5 GLN A 365 GLU A 367 -1 O MET A 366 N VAL A 294 SHEET 5 AA1 5 TYR A 323 GLY A 325 -1 N ASN A 324 O GLN A 365 SHEET 1 AA2 5 PHE A 267 SER A 275 0 SHEET 2 AA2 5 GLY A 279 HIS A 286 -1 O LYS A 283 N GLU A 271 SHEET 3 AA2 5 LYS A 291 LYS A 299 -1 O ILE A 295 N PHE A 282 SHEET 4 AA2 5 LYS A 358 LEU A 362 -1 O LEU A 362 N VAL A 298 SHEET 5 AA2 5 ASP A 328 TYR A 332 -1 N GLY A 329 O CYS A 361 SHEET 1 AA3 2 LEU A 410 HIS A 412 0 SHEET 2 AA3 2 VAL A 436 SER A 438 -1 O THR A 437 N ILE A 411 SHEET 1 AA4 2 ILE A 420 LEU A 422 0 SHEET 2 AA4 2 VAL A 428 ILE A 430 -1 O LYS A 429 N PHE A 421 CISPEP 1 TYR A 465 GLY A 466 0 -6.74 CRYST1 92.689 92.689 123.325 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010789 0.006229 0.000000 0.00000 SCALE2 0.000000 0.012458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008109 0.00000