HEADER DNA BINDING PROTEIN 17-APR-18 6D46 TITLE CRYSTAL STRUCTURE OF A DNA POLYMERASE III SUBUNIT BETA DNAN SLIDING TITLE 2 CLAMP FROM RICKETTSIA TYPHI STR. WILMINGTON COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA SLIDING CLAMP; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SLIDING CLAMP,BETA-CLAMP PROCESSIVITY FACTOR,DNA POLYMERASE COMPND 5 III BETA SLIDING CLAMP SUBUNIT,DNA POLYMERASE III SUBUNIT BETA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICKETTSIA TYPHI (STRAIN ATCC VR-144 / SOURCE 3 WILMINGTON); SOURCE 4 ORGANISM_TAXID: 257363; SOURCE 5 STRAIN: ATCC VR-144 / WILMINGTON; SOURCE 6 GENE: DNAN, RT0405; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, DNA BINDING, POLYMERASE, DNAN, GRISELIMYCIN, KEYWDS 3 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 4 DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 04-OCT-23 6D46 1 REMARK REVDAT 2 06-JAN-21 6D46 1 REMARK REVDAT 1 02-MAY-18 6D46 0 JRNL AUTH T.E.EDWARDS,J.ABENDROTH,P.S.HORANYI,D.D.LORIMER, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF A DNA POLYMERASE III SUBUNIT BETA DNAN JRNL TITL 2 SLIDING CLAMP FROM RICKETTSIA TYPHI STR. WILMINGTON JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 30232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.510 REMARK 3 FREE R VALUE TEST SET COUNT : 1969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5416 - 4.8180 0.99 2123 141 0.1658 0.1767 REMARK 3 2 4.8180 - 3.8251 1.00 2064 142 0.1323 0.1704 REMARK 3 3 3.8251 - 3.3418 0.99 2004 156 0.1608 0.2009 REMARK 3 4 3.3418 - 3.0363 0.99 2053 158 0.1808 0.2247 REMARK 3 5 3.0363 - 2.8188 0.99 2022 137 0.1951 0.2410 REMARK 3 6 2.8188 - 2.6526 0.99 1995 135 0.1903 0.2597 REMARK 3 7 2.6526 - 2.5198 0.99 2033 117 0.1879 0.2351 REMARK 3 8 2.5198 - 2.4101 0.99 2012 143 0.1961 0.2299 REMARK 3 9 2.4101 - 2.3173 0.99 2005 148 0.1903 0.2770 REMARK 3 10 2.3173 - 2.2374 0.99 1978 132 0.1870 0.2564 REMARK 3 11 2.2374 - 2.1674 0.99 1995 139 0.2010 0.2806 REMARK 3 12 2.1674 - 2.1055 0.99 1992 147 0.2265 0.2987 REMARK 3 13 2.1055 - 2.0500 0.99 1965 140 0.2395 0.3014 REMARK 3 14 2.0500 - 2.0000 0.98 2022 134 0.2685 0.2934 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9953 0.2957 -8.7424 REMARK 3 T TENSOR REMARK 3 T11: 0.2176 T22: 0.2772 REMARK 3 T33: 0.2130 T12: -0.0361 REMARK 3 T13: -0.0044 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.8989 L22: 3.1157 REMARK 3 L33: 6.3404 L12: -1.0426 REMARK 3 L13: 0.7648 L23: 1.1080 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: 0.1630 S13: 0.1598 REMARK 3 S21: -0.0775 S22: -0.0943 S23: 0.0415 REMARK 3 S31: -0.2195 S32: 0.0216 S33: 0.1022 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6113 2.0025 19.2942 REMARK 3 T TENSOR REMARK 3 T11: 0.2260 T22: 0.3076 REMARK 3 T33: 0.2357 T12: -0.0080 REMARK 3 T13: -0.0242 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 4.4317 L22: 1.7135 REMARK 3 L33: 4.4399 L12: 1.0972 REMARK 3 L13: -1.8443 L23: 0.2870 REMARK 3 S TENSOR REMARK 3 S11: 0.0628 S12: -0.5140 S13: 0.1295 REMARK 3 S21: 0.1077 S22: -0.0985 S23: 0.1039 REMARK 3 S31: 0.0570 S32: 0.0485 S33: 0.0468 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1518 -1.0686 28.4618 REMARK 3 T TENSOR REMARK 3 T11: 0.3274 T22: 0.5375 REMARK 3 T33: 0.2439 T12: -0.0224 REMARK 3 T13: -0.0095 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 3.8761 L22: 0.1481 REMARK 3 L33: 0.6515 L12: 0.0691 REMARK 3 L13: -0.7248 L23: -0.1239 REMARK 3 S TENSOR REMARK 3 S11: -0.0752 S12: -0.9593 S13: 0.0255 REMARK 3 S21: 0.0260 S22: 0.0470 S23: 0.0342 REMARK 3 S31: 0.0625 S32: 0.0534 S33: 0.0363 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30248 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 41.533 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.118 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.23 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5W7Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24.49 MG/ML RITYA.17987.A.B1.PW38354 REMARK 280 AGAINST JCSG+ SCREEN CONDITION C6 = 0.1 M PHOSPHATE/CITRATE PH REMARK 280 4.2, 40% PEG 300, DIRECT CRYO, 295697C6, FFQ4-2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.76000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.76000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLU A 23 REMARK 465 LYS A 24 REMARK 465 ARG A 25 REMARK 465 ASN A 26 REMARK 465 VAL A 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 GLN A 13 CG CD OE1 NE2 REMARK 470 ILE A 28 CG1 CG2 CD1 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 MET A 50 CG SD CE REMARK 470 ILE A 94 CG1 CG2 CD1 REMARK 470 MET A 95 CG SD CE REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 153 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 ASP A 164 CG OD1 OD2 REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 THR A 244 OG1 CG2 REMARK 470 PHE A 251 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 ILE A 356 CG1 CG2 CD1 REMARK 470 GLN A 368 CG CD OE1 NE2 REMARK 470 LYS A 380 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 PG4 A 401 O HOH A 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 49 -154.98 -132.48 REMARK 500 ASP A 93 40.73 -87.14 REMARK 500 ASN A 156 32.61 -88.06 REMARK 500 ASP A 164 -130.45 60.26 REMARK 500 GLU A 215 -160.31 -113.23 REMARK 500 GLU A 232 -46.29 72.84 REMARK 500 ASP A 247 97.85 -69.90 REMARK 500 PHE A 282 68.86 -151.90 REMARK 500 GLN A 368 13.12 58.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-RITYA.17987.A RELATED DB: TARGETTRACK DBREF 6D46 A 1 381 UNP Q68WW0 DPO3B_RICTY 1 381 SEQADV 6D46 MET A -7 UNP Q68WW0 INITIATING METHIONINE SEQADV 6D46 ALA A -6 UNP Q68WW0 EXPRESSION TAG SEQADV 6D46 HIS A -5 UNP Q68WW0 EXPRESSION TAG SEQADV 6D46 HIS A -4 UNP Q68WW0 EXPRESSION TAG SEQADV 6D46 HIS A -3 UNP Q68WW0 EXPRESSION TAG SEQADV 6D46 HIS A -2 UNP Q68WW0 EXPRESSION TAG SEQADV 6D46 HIS A -1 UNP Q68WW0 EXPRESSION TAG SEQADV 6D46 HIS A 0 UNP Q68WW0 EXPRESSION TAG SEQRES 1 A 389 MET ALA HIS HIS HIS HIS HIS HIS MET LEU LYS LEU ILE SEQRES 2 A 389 VAL GLU THR LYS THR LEU VAL GLN SER LEU GLY PHE ALA SEQRES 3 A 389 ARG SER VAL VAL GLU LYS ARG ASN VAL ILE PRO GLU TYR SEQRES 4 A 389 ALA ASN ILE LYS LEU SER ALA LYS ASP GLY ASN LEU GLU SEQRES 5 A 389 LEU SER SER THR ASN MET ASP LEU TYR LEU SER GLN LYS SEQRES 6 A 389 ILE ALA VAL GLN VAL LEU SER GLU GLY GLU ILE THR VAL SEQRES 7 A 389 SER THR GLN THR LEU SER ASP ILE VAL ARG LYS LEU PRO SEQRES 8 A 389 ASP SER GLU LEU THR LEU THR GLU LEU ASP ILE MET LYS SEQRES 9 A 389 LEU GLU ILE LYS GLY GLN ASN CYS GLN PHE ASN LEU PHE SEQRES 10 A 389 THR LEU PRO VAL SER SER PHE PRO ALA MET ASP SER ILE SEQRES 11 A 389 LYS PRO GLU VAL SER PHE LYS ILE SER CYS ALA ASP PHE SEQRES 12 A 389 ALA LYS ILE ILE GLU SER THR LYS PHE SER ILE SER LEU SEQRES 13 A 389 ASP GLU THR ARG TYR ASN LEU ASN GLY ILE TYR LEU HIS SEQRES 14 A 389 ILE LYS ASP LYS GLU PHE PHE ALA ALA SER THR ASP GLY SEQRES 15 A 389 HIS ARG LEU SER ILE SER TRP ILE THR LEU GLU GLU LYS SEQRES 16 A 389 ILE LYS ASN PHE GLY VAL ILE LEU PRO GLN LYS SER ALA SEQRES 17 A 389 GLU GLU ILE LEU LYS ILE VAL LYS ASP LEU LYS ASN ILE SEQRES 18 A 389 HIS GLU ASP ILE GLU ILE LEU LEU SER SER ASN LYS ILE SEQRES 19 A 389 LYS PHE ILE CYS ASN GLU ASN THR ILE LEU LEU SER LYS SEQRES 20 A 389 LEU ILE ASP GLY THR PHE PRO ASP TYR SER ALA PHE ILE SEQRES 21 A 389 PRO LYS SER SER ILE SER LYS LEU VAL ILE ASN ARG LYS SEQRES 22 A 389 ILE PHE ALA ASP SER ILE GLU ARG ILE ALA ILE ILE THR SEQRES 23 A 389 VAL GLU LYS PHE ARG ALA ILE LYS LEU SER LEU SER ARG SEQRES 24 A 389 LYS THR LEU GLU ILE SER ALA VAL GLY GLU ALA ARG GLY SEQRES 25 A 389 ASN ALA LYS GLU ILE ILE THR ALA SER GLN ASP LYS GLU SEQRES 26 A 389 SER PHE TYR GLU TYR ASN CYS ASP GLU SER LEU VAL ILE SEQRES 27 A 389 GLY PHE ASN PRO GLN TYR LEU GLU ASP VAL LEU LYS ALA SEQRES 28 A 389 VAL LYS SER ASN LEU VAL GLU LEU TYR PHE SER ASP ILE SEQRES 29 A 389 SER ALA SER ALA PRO VAL LEU ILE LYS PHE PRO GLN ASN SEQRES 30 A 389 PRO LYS ASP ILE PHE VAL ILE MET PRO VAL LYS VAL HET PG4 A 401 13 HET PG4 A 402 13 HET CL A 403 1 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM CL CHLORIDE ION FORMUL 2 PG4 2(C8 H18 O5) FORMUL 4 CL CL 1- FORMUL 5 HOH *180(H2 O) HELIX 1 AA1 THR A 8 VAL A 22 1 15 HELIX 2 AA2 ILE A 28 TYR A 31 5 4 HELIX 3 AA3 THR A 72 ARG A 80 1 9 HELIX 4 AA4 PRO A 112 PHE A 116 5 5 HELIX 5 AA5 CYS A 132 SER A 141 1 10 HELIX 6 AA6 THR A 142 ILE A 146 5 5 HELIX 7 AA7 ARG A 152 LEU A 155 5 4 HELIX 8 AA8 GLN A 197 ASP A 209 1 13 HELIX 9 AA9 ASP A 247 ILE A 252 5 6 HELIX 10 AB1 ARG A 264 ILE A 276 1 13 HELIX 11 AB2 ILE A 277 THR A 278 5 2 HELIX 12 AB3 VAL A 279 ARG A 283 5 5 HELIX 13 AB4 ASP A 315 SER A 318 5 4 HELIX 14 AB5 ASN A 333 VAL A 344 1 12 SHEET 1 AA1 5 GLN A 61 SER A 64 0 SHEET 2 AA1 5 LYS A 3 GLU A 7 -1 N ILE A 5 O GLN A 61 SHEET 3 AA1 5 GLU A 86 LEU A 92 -1 O LEU A 89 N LEU A 4 SHEET 4 AA1 5 LYS A 96 LYS A 100 -1 O GLU A 98 N THR A 90 SHEET 5 AA1 5 GLN A 105 PHE A 109 -1 O LEU A 108 N LEU A 97 SHEET 1 AA2 8 GLY A 66 SER A 71 0 SHEET 2 AA2 8 ASN A 33 LYS A 39 -1 N LEU A 36 O ILE A 68 SHEET 3 AA2 8 ASN A 42 THR A 48 -1 O GLU A 44 N SER A 37 SHEET 4 AA2 8 LEU A 52 ALA A 59 -1 O LEU A 54 N SER A 47 SHEET 5 AA2 8 THR A 234 LYS A 239 -1 O ILE A 235 N SER A 55 SHEET 6 AA2 8 LYS A 225 CYS A 230 -1 N CYS A 230 O THR A 234 SHEET 7 AA2 8 ASP A 216 LEU A 221 -1 N GLU A 218 O ILE A 229 SHEET 8 AA2 8 VAL A 126 SER A 131 -1 N ILE A 130 O ILE A 217 SHEET 1 AA3 9 PHE A 191 PRO A 196 0 SHEET 2 AA3 9 GLY A 157 LYS A 163 -1 N LEU A 160 O VAL A 193 SHEET 3 AA3 9 GLU A 166 THR A 172 -1 O PHE A 168 N HIS A 161 SHEET 4 AA3 9 ARG A 176 THR A 183 -1 O ILE A 182 N PHE A 167 SHEET 5 AA3 9 ASN A 369 ILE A 376 -1 O ILE A 373 N ILE A 179 SHEET 6 AA3 9 VAL A 362 PHE A 366 -1 N ILE A 364 O PHE A 374 SHEET 7 AA3 9 LEU A 348 PHE A 353 -1 N TYR A 352 O LEU A 363 SHEET 8 AA3 9 SER A 258 ASN A 263 -1 N SER A 258 O PHE A 353 SHEET 9 AA3 9 TYR A 320 TYR A 322 -1 O GLU A 321 N VAL A 261 SHEET 1 AA4 4 GLY A 304 THR A 311 0 SHEET 2 AA4 4 THR A 293 GLY A 300 -1 N LEU A 294 O ILE A 310 SHEET 3 AA4 4 ILE A 285 LEU A 289 -1 N LYS A 286 O SER A 297 SHEET 4 AA4 4 LEU A 328 PHE A 332 -1 O LEU A 328 N LEU A 289 SITE 1 AC1 4 ARG A 80 LYS A 81 GLU A 272 HOH A 501 SITE 1 AC2 11 THR A 48 ASN A 49 MET A 50 LEU A 52 SITE 2 AC2 11 TYR A 53 GLU A 65 ASP A 120 LYS A 225 SITE 3 AC2 11 LEU A 237 LYS A 239 CL A 403 SITE 1 AC3 2 GLU A 65 PG4 A 402 CRYST1 147.520 43.050 83.170 90.00 121.39 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006779 0.000000 0.004137 0.00000 SCALE2 0.000000 0.023229 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014085 0.00000