HEADER OXIDOREDUCTASE 19-APR-18 6D52 TITLE SUPEROXIDE DISMUTASE SODCI OF SALMONELLA ENTERICA SEROVAR TYPHIMURIUM TITLE 2 AT 1.6 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN] 1; COMPND 3 CHAIN: B, D, C, A; COMPND 4 SYNONYM: SODCI; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN 4/74); SOURCE 3 ORGANISM_TAXID: 909946; SOURCE 4 STRAIN: 4/74; SOURCE 5 GENE: SODC1, SODC, STM474_1035; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS SUPEROXIDE DISMUTASE, SOD, CU-ZN SUPEROXIDE DISMUTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.W.NEWHOUSE IX,K.T.FOREST,K.A.SATYSHUR REVDAT 3 04-OCT-23 6D52 1 REMARK REVDAT 2 27-NOV-19 6D52 1 REMARK REVDAT 1 15-MAY-19 6D52 0 JRNL AUTH P.W.NEWHOUSE IX,K.A.SATYSHUR,K.T.FOREST,J.M.SLAUCH JRNL TITL SUPEROXIDE DISMUTASE SODCI OF SALMONELLA ENTERICA SEROVAR JRNL TITL 2 TYPHIMURIUM AT 1.6 ANGSTROM RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2992) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 73159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9046 - 4.6087 1.00 5868 144 0.1733 0.1858 REMARK 3 2 4.6087 - 3.6607 1.00 5883 148 0.1319 0.1539 REMARK 3 3 3.6607 - 3.1987 1.00 5861 138 0.1530 0.1646 REMARK 3 4 3.1987 - 2.9066 1.00 5911 140 0.1563 0.1915 REMARK 3 5 2.9066 - 2.6984 1.00 5866 145 0.1562 0.1772 REMARK 3 6 2.6984 - 2.5394 1.00 5861 137 0.1559 0.1913 REMARK 3 7 2.5394 - 2.4123 1.00 5898 144 0.1593 0.2103 REMARK 3 8 2.4123 - 2.3074 1.00 5908 144 0.1509 0.1861 REMARK 3 9 2.3074 - 2.2186 1.00 5842 146 0.1508 0.1712 REMARK 3 10 2.2186 - 2.1421 1.00 5885 142 0.1498 0.1791 REMARK 3 11 2.1421 - 2.0751 1.00 5892 147 0.1456 0.1678 REMARK 3 12 2.0751 - 2.0158 1.00 5861 144 0.1519 0.1925 REMARK 3 13 2.0158 - 1.9628 1.00 5869 149 0.1536 0.1593 REMARK 3 14 1.9628 - 1.9149 1.00 5914 141 0.1497 0.1926 REMARK 3 15 1.9149 - 1.8714 1.00 5858 147 0.1470 0.1649 REMARK 3 16 1.8714 - 1.8315 1.00 5912 138 0.1694 0.1739 REMARK 3 17 1.8315 - 1.7949 1.00 5855 156 0.1678 0.2121 REMARK 3 18 1.7949 - 1.7610 0.99 5835 139 0.1824 0.2324 REMARK 3 19 1.7610 - 1.7296 0.98 5762 143 0.1967 0.2266 REMARK 3 20 1.7296 - 1.7003 0.95 5615 132 0.2086 0.2320 REMARK 3 21 1.7003 - 1.6729 0.91 5313 141 0.2231 0.2365 REMARK 3 22 1.6729 - 1.6471 0.85 4997 126 0.2416 0.2679 REMARK 3 23 1.6471 - 1.6229 0.79 4676 115 0.2675 0.2720 REMARK 3 24 1.6229 - 1.6000 0.73 4285 110 0.3148 0.3268 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4783 REMARK 3 ANGLE : 0.875 6501 REMARK 3 CHIRALITY : 0.052 708 REMARK 3 PLANARITY : 0.006 861 REMARK 3 DIHEDRAL : 12.881 2877 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9839 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73177 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1EQW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM CHLORIDE, SODIUM REMARK 280 ACETATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.76500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.08600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.28550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.08600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.76500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.28550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 157 REMARK 465 LEU B 158 REMARK 465 GLU B 159 REMARK 465 HIS B 160 REMARK 465 HIS B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 LEU D 158 REMARK 465 GLU D 159 REMARK 465 HIS D 160 REMARK 465 HIS D 161 REMARK 465 HIS D 162 REMARK 465 HIS D 163 REMARK 465 HIS D 164 REMARK 465 HIS D 165 REMARK 465 LEU C 158 REMARK 465 GLU C 159 REMARK 465 HIS C 160 REMARK 465 HIS C 161 REMARK 465 HIS C 162 REMARK 465 HIS C 163 REMARK 465 HIS C 164 REMARK 465 HIS C 165 REMARK 465 LEU A 158 REMARK 465 GLU A 159 REMARK 465 HIS A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS B 131 O HOH B 303 1.59 REMARK 500 O HOH D 438 O HOH D 466 1.96 REMARK 500 O HOH A 356 O HOH A 415 1.99 REMARK 500 O HOH C 393 O HOH C 409 2.01 REMARK 500 O HOH D 327 O HOH C 392 2.04 REMARK 500 O HOH D 382 O HOH D 448 2.06 REMARK 500 O HOH D 444 O HOH D 483 2.09 REMARK 500 O HOH D 430 O HOH C 308 2.13 REMARK 500 O HOH B 305 O HOH B 448 2.13 REMARK 500 O HOH B 381 O HOH B 431 2.16 REMARK 500 O HOH D 326 O HOH D 444 2.16 REMARK 500 O HOH D 341 O HOH C 368 2.17 REMARK 500 O HOH B 323 O HOH B 328 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 492 O HOH A 470 3645 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 76 61.74 -151.45 REMARK 500 ASN C 2 -71.48 -103.12 REMARK 500 ASP C 76 61.45 -150.50 REMARK 500 ASP A 76 62.14 -153.57 REMARK 500 GLU A 156 -126.75 -91.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 49 ND1 REMARK 620 2 HIS B 51 NE2 141.0 REMARK 620 3 HIS B 130 NE2 99.8 119.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 74 ND1 REMARK 620 2 HIS B 83 ND1 105.2 REMARK 620 3 HIS B 92 ND1 107.3 121.8 REMARK 620 4 ASP B 95 OD1 105.8 100.0 115.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 49 ND1 REMARK 620 2 HIS D 51 NE2 140.3 REMARK 620 3 HIS D 130 NE2 100.1 119.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 74 ND1 REMARK 620 2 HIS D 83 ND1 106.3 REMARK 620 3 HIS D 92 ND1 102.7 123.5 REMARK 620 4 ASP D 95 OD1 108.4 99.0 116.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 49 ND1 REMARK 620 2 HIS C 51 NE2 141.2 REMARK 620 3 HIS C 130 NE2 101.9 116.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 74 ND1 REMARK 620 2 HIS C 83 ND1 103.1 REMARK 620 3 HIS C 92 ND1 102.4 123.8 REMARK 620 4 ASP C 95 OD1 111.0 97.1 118.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 49 ND1 REMARK 620 2 HIS A 51 NE2 140.7 REMARK 620 3 HIS A 130 NE2 99.8 119.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 74 ND1 REMARK 620 2 HIS A 83 ND1 105.8 REMARK 620 3 HIS A 92 ND1 104.0 124.0 REMARK 620 4 ASP A 95 OD1 108.8 97.0 116.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 202 DBREF 6D52 B 1 157 UNP E8XDJ8 SODC1_SALT4 21 177 DBREF 6D52 D 1 157 UNP E8XDJ8 SODC1_SALT4 21 177 DBREF 6D52 C 1 157 UNP E8XDJ8 SODC1_SALT4 21 177 DBREF 6D52 A 1 157 UNP E8XDJ8 SODC1_SALT4 21 177 SEQADV 6D52 LEU B 158 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 GLU B 159 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS B 160 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS B 161 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS B 162 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS B 163 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS B 164 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS B 165 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 LEU D 158 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 GLU D 159 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS D 160 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS D 161 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS D 162 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS D 163 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS D 164 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS D 165 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 LEU C 158 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 GLU C 159 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS C 160 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS C 161 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS C 162 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS C 163 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS C 164 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS C 165 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 LEU A 158 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 GLU A 159 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS A 160 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS A 161 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS A 162 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS A 163 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS A 164 UNP E8XDJ8 EXPRESSION TAG SEQADV 6D52 HIS A 165 UNP E8XDJ8 EXPRESSION TAG SEQRES 1 B 165 GLU ASN THR LEU THR VAL LYS MET ASN ASP ALA LEU SER SEQRES 2 B 165 SER GLY THR GLY GLU ASN ILE GLY GLU ILE THR VAL SER SEQRES 3 B 165 GLU THR PRO TYR GLY LEU LEU PHE THR PRO HIS LEU ASN SEQRES 4 B 165 GLY LEU THR PRO GLY ILE HIS GLY PHE HIS VAL HIS THR SEQRES 5 B 165 ASN PRO SER CYS MET PRO GLY MET LYS ASP GLY LYS GLU SEQRES 6 B 165 VAL PRO ALA LEU MET ALA GLY GLY HIS LEU ASP PRO GLU SEQRES 7 B 165 LYS THR GLY LYS HIS LEU GLY PRO TYR ASN ASP LYS GLY SEQRES 8 B 165 HIS LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP SEQRES 9 B 165 GLY THR ALA THR TYR PRO LEU LEU ALA PRO ARG LEU LYS SEQRES 10 B 165 SER LEU SER GLU LEU LYS GLY HIS SER LEU MET ILE HIS SEQRES 11 B 165 LYS GLY GLY ASP ASN TYR SER ASP LYS PRO ALA PRO LEU SEQRES 12 B 165 GLY GLY GLY GLY ALA ARG PHE ALA CYS GLY VAL ILE GLU SEQRES 13 B 165 LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 165 GLU ASN THR LEU THR VAL LYS MET ASN ASP ALA LEU SER SEQRES 2 D 165 SER GLY THR GLY GLU ASN ILE GLY GLU ILE THR VAL SER SEQRES 3 D 165 GLU THR PRO TYR GLY LEU LEU PHE THR PRO HIS LEU ASN SEQRES 4 D 165 GLY LEU THR PRO GLY ILE HIS GLY PHE HIS VAL HIS THR SEQRES 5 D 165 ASN PRO SER CYS MET PRO GLY MET LYS ASP GLY LYS GLU SEQRES 6 D 165 VAL PRO ALA LEU MET ALA GLY GLY HIS LEU ASP PRO GLU SEQRES 7 D 165 LYS THR GLY LYS HIS LEU GLY PRO TYR ASN ASP LYS GLY SEQRES 8 D 165 HIS LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP SEQRES 9 D 165 GLY THR ALA THR TYR PRO LEU LEU ALA PRO ARG LEU LYS SEQRES 10 D 165 SER LEU SER GLU LEU LYS GLY HIS SER LEU MET ILE HIS SEQRES 11 D 165 LYS GLY GLY ASP ASN TYR SER ASP LYS PRO ALA PRO LEU SEQRES 12 D 165 GLY GLY GLY GLY ALA ARG PHE ALA CYS GLY VAL ILE GLU SEQRES 13 D 165 LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 165 GLU ASN THR LEU THR VAL LYS MET ASN ASP ALA LEU SER SEQRES 2 C 165 SER GLY THR GLY GLU ASN ILE GLY GLU ILE THR VAL SER SEQRES 3 C 165 GLU THR PRO TYR GLY LEU LEU PHE THR PRO HIS LEU ASN SEQRES 4 C 165 GLY LEU THR PRO GLY ILE HIS GLY PHE HIS VAL HIS THR SEQRES 5 C 165 ASN PRO SER CYS MET PRO GLY MET LYS ASP GLY LYS GLU SEQRES 6 C 165 VAL PRO ALA LEU MET ALA GLY GLY HIS LEU ASP PRO GLU SEQRES 7 C 165 LYS THR GLY LYS HIS LEU GLY PRO TYR ASN ASP LYS GLY SEQRES 8 C 165 HIS LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP SEQRES 9 C 165 GLY THR ALA THR TYR PRO LEU LEU ALA PRO ARG LEU LYS SEQRES 10 C 165 SER LEU SER GLU LEU LYS GLY HIS SER LEU MET ILE HIS SEQRES 11 C 165 LYS GLY GLY ASP ASN TYR SER ASP LYS PRO ALA PRO LEU SEQRES 12 C 165 GLY GLY GLY GLY ALA ARG PHE ALA CYS GLY VAL ILE GLU SEQRES 13 C 165 LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 165 GLU ASN THR LEU THR VAL LYS MET ASN ASP ALA LEU SER SEQRES 2 A 165 SER GLY THR GLY GLU ASN ILE GLY GLU ILE THR VAL SER SEQRES 3 A 165 GLU THR PRO TYR GLY LEU LEU PHE THR PRO HIS LEU ASN SEQRES 4 A 165 GLY LEU THR PRO GLY ILE HIS GLY PHE HIS VAL HIS THR SEQRES 5 A 165 ASN PRO SER CYS MET PRO GLY MET LYS ASP GLY LYS GLU SEQRES 6 A 165 VAL PRO ALA LEU MET ALA GLY GLY HIS LEU ASP PRO GLU SEQRES 7 A 165 LYS THR GLY LYS HIS LEU GLY PRO TYR ASN ASP LYS GLY SEQRES 8 A 165 HIS LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP SEQRES 9 A 165 GLY THR ALA THR TYR PRO LEU LEU ALA PRO ARG LEU LYS SEQRES 10 A 165 SER LEU SER GLU LEU LYS GLY HIS SER LEU MET ILE HIS SEQRES 11 A 165 LYS GLY GLY ASP ASN TYR SER ASP LYS PRO ALA PRO LEU SEQRES 12 A 165 GLY GLY GLY GLY ALA ARG PHE ALA CYS GLY VAL ILE GLU SEQRES 13 A 165 LYS LEU GLU HIS HIS HIS HIS HIS HIS HET ZN B 201 1 HET CU B 202 1 HET ZN D 201 1 HET CU D 202 1 HET ZN C 201 1 HET CU C 202 1 HET ZN A 201 1 HET CU A 202 1 HETNAM ZN ZINC ION HETNAM CU COPPER (II) ION FORMUL 5 ZN 4(ZN 2+) FORMUL 6 CU 4(CU 2+) FORMUL 13 HOH *659(H2 O) HELIX 1 AA1 ALA B 68 GLY B 72 5 5 HELIX 2 AA2 SER B 118 LYS B 123 5 6 HELIX 3 AA3 ALA B 141 GLY B 146 5 6 HELIX 4 AA4 ALA D 68 GLY D 72 5 5 HELIX 5 AA5 SER D 118 LYS D 123 5 6 HELIX 6 AA6 ALA D 141 GLY D 146 5 6 HELIX 7 AA7 ALA C 68 GLY C 72 5 5 HELIX 8 AA8 SER C 118 LYS C 123 5 6 HELIX 9 AA9 ALA C 141 GLY C 146 5 6 HELIX 10 AB1 ALA A 68 GLY A 72 5 5 HELIX 11 AB2 SER A 118 LYS A 123 5 6 HELIX 12 AB3 ALA A 141 GLY A 146 5 6 SHEET 1 AA1 7 PHE B 48 HIS B 51 0 SHEET 2 AA1 7 HIS B 125 HIS B 130 -1 O MET B 128 N HIS B 49 SHEET 3 AA1 7 ARG B 149 ILE B 155 -1 O ALA B 151 N ILE B 129 SHEET 4 AA1 7 THR B 3 LEU B 12 -1 N ALA B 11 O PHE B 150 SHEET 5 AA1 7 GLY B 15 THR B 28 -1 O GLY B 17 N ASP B 10 SHEET 6 AA1 7 GLY B 31 LEU B 38 -1 O THR B 35 N THR B 24 SHEET 7 AA1 7 LEU B 111 ALA B 113 -1 O LEU B 111 N PHE B 34 SHEET 1 AA2 2 GLY B 44 HIS B 46 0 SHEET 2 AA2 2 LEU B 99 VAL B 101 -1 O LEU B 99 N HIS B 46 SHEET 1 AA3 2 GLY B 59 LYS B 61 0 SHEET 2 AA3 2 LYS B 64 VAL B 66 -1 O VAL B 66 N GLY B 59 SHEET 1 AA4 7 PHE D 48 HIS D 51 0 SHEET 2 AA4 7 HIS D 125 HIS D 130 -1 O SER D 126 N HIS D 51 SHEET 3 AA4 7 ARG D 149 ILE D 155 -1 O ALA D 151 N ILE D 129 SHEET 4 AA4 7 THR D 3 ALA D 11 -1 N ALA D 11 O PHE D 150 SHEET 5 AA4 7 THR D 16 THR D 28 -1 O VAL D 25 N LEU D 4 SHEET 6 AA4 7 GLY D 31 LEU D 38 -1 O THR D 35 N THR D 24 SHEET 7 AA4 7 LEU D 111 ALA D 113 -1 O LEU D 111 N PHE D 34 SHEET 1 AA5 2 GLY D 44 HIS D 46 0 SHEET 2 AA5 2 LEU D 99 VAL D 101 -1 O LEU D 99 N HIS D 46 SHEET 1 AA6 2 GLY D 59 LYS D 61 0 SHEET 2 AA6 2 LYS D 64 VAL D 66 -1 O VAL D 66 N GLY D 59 SHEET 1 AA7 7 PHE C 48 HIS C 51 0 SHEET 2 AA7 7 HIS C 125 HIS C 130 -1 O MET C 128 N HIS C 49 SHEET 3 AA7 7 ARG C 149 ILE C 155 -1 O GLY C 153 N LEU C 127 SHEET 4 AA7 7 THR C 3 LEU C 12 -1 N ALA C 11 O PHE C 150 SHEET 5 AA7 7 GLY C 15 THR C 28 -1 O VAL C 25 N LEU C 4 SHEET 6 AA7 7 GLY C 31 LEU C 38 -1 O THR C 35 N THR C 24 SHEET 7 AA7 7 LEU C 111 ALA C 113 -1 O LEU C 111 N PHE C 34 SHEET 1 AA8 2 GLY C 44 HIS C 46 0 SHEET 2 AA8 2 LEU C 99 VAL C 101 -1 O LEU C 99 N HIS C 46 SHEET 1 AA9 2 GLY C 59 LYS C 61 0 SHEET 2 AA9 2 LYS C 64 VAL C 66 -1 O VAL C 66 N GLY C 59 SHEET 1 AB1 7 PHE A 48 HIS A 51 0 SHEET 2 AB1 7 HIS A 125 HIS A 130 -1 O MET A 128 N HIS A 49 SHEET 3 AB1 7 ARG A 149 ILE A 155 -1 O ALA A 151 N ILE A 129 SHEET 4 AB1 7 THR A 3 LEU A 12 -1 N ASN A 9 O CYS A 152 SHEET 5 AB1 7 GLY A 15 THR A 28 -1 O GLY A 17 N ASP A 10 SHEET 6 AB1 7 GLY A 31 LEU A 38 -1 O THR A 35 N THR A 24 SHEET 7 AB1 7 LEU A 111 ALA A 113 -1 O LEU A 111 N PHE A 34 SHEET 1 AB2 2 GLY A 44 HIS A 46 0 SHEET 2 AB2 2 LEU A 99 VAL A 101 -1 O LEU A 99 N HIS A 46 SHEET 1 AB3 2 GLY A 59 LYS A 61 0 SHEET 2 AB3 2 LYS A 64 VAL A 66 -1 O VAL A 66 N GLY A 59 SSBOND 1 CYS B 56 CYS B 152 1555 1555 2.06 SSBOND 2 CYS D 56 CYS D 152 1555 1555 2.06 SSBOND 3 CYS C 56 CYS C 152 1555 1555 2.04 SSBOND 4 CYS A 56 CYS A 152 1555 1555 2.04 LINK ND1 HIS B 49 CU CU B 202 1555 1555 1.97 LINK NE2 HIS B 51 CU CU B 202 1555 1555 1.99 LINK ND1 HIS B 74 ZN ZN B 201 1555 1555 2.05 LINK ND1 HIS B 83 ZN ZN B 201 1555 1555 2.06 LINK ND1 HIS B 92 ZN ZN B 201 1555 1555 2.05 LINK OD1 ASP B 95 ZN ZN B 201 1555 1555 1.93 LINK NE2 HIS B 130 CU CU B 202 1555 1555 2.05 LINK ND1 HIS D 49 CU CU D 202 1555 1555 2.01 LINK NE2 HIS D 51 CU CU D 202 1555 1555 2.04 LINK ND1 HIS D 74 ZN ZN D 201 1555 1555 1.96 LINK ND1 HIS D 83 ZN ZN D 201 1555 1555 2.02 LINK ND1 HIS D 92 ZN ZN D 201 1555 1555 2.08 LINK OD1 ASP D 95 ZN ZN D 201 1555 1555 1.98 LINK NE2 HIS D 130 CU CU D 202 1555 1555 2.03 LINK ND1 HIS C 49 CU CU C 202 1555 1555 2.01 LINK NE2 HIS C 51 CU CU C 202 1555 1555 2.01 LINK ND1 HIS C 74 ZN ZN C 201 1555 1555 2.04 LINK ND1 HIS C 83 ZN ZN C 201 1555 1555 2.03 LINK ND1 HIS C 92 ZN ZN C 201 1555 1555 2.14 LINK OD1 ASP C 95 ZN ZN C 201 1555 1555 1.97 LINK NE2 HIS C 130 CU CU C 202 1555 1555 2.01 LINK ND1 HIS A 49 CU CU A 202 1555 1555 1.99 LINK NE2 HIS A 51 CU CU A 202 1555 1555 2.01 LINK ND1 HIS A 74 ZN ZN A 201 1555 1555 2.01 LINK ND1 HIS A 83 ZN ZN A 201 1555 1555 2.07 LINK ND1 HIS A 92 ZN ZN A 201 1555 1555 2.07 LINK OD1 ASP A 95 ZN ZN A 201 1555 1555 1.92 LINK NE2 HIS A 130 CU CU A 202 1555 1555 2.00 CISPEP 1 LYS B 139 PRO B 140 0 4.06 CISPEP 2 LYS D 139 PRO D 140 0 3.76 CISPEP 3 LYS C 139 PRO C 140 0 1.65 CISPEP 4 LYS A 139 PRO A 140 0 -0.11 SITE 1 AC1 4 HIS B 74 HIS B 83 HIS B 92 ASP B 95 SITE 1 AC2 4 HIS B 49 HIS B 51 HIS B 74 HIS B 130 SITE 1 AC3 4 HIS D 74 HIS D 83 HIS D 92 ASP D 95 SITE 1 AC4 4 HIS D 49 HIS D 51 HIS D 74 HIS D 130 SITE 1 AC5 4 HIS C 74 HIS C 83 HIS C 92 ASP C 95 SITE 1 AC6 4 HIS C 49 HIS C 51 HIS C 74 HIS C 130 SITE 1 AC7 4 HIS A 74 HIS A 83 HIS A 92 ASP A 95 SITE 1 AC8 4 HIS A 49 HIS A 51 HIS A 74 HIS A 130 CRYST1 67.530 68.571 122.172 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014808 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014583 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008185 0.00000