HEADER SIGNALING PROTEIN 19-APR-18 6D59 TITLE RAS:SOS:RAS IN COMPLEX WITH A SMALL MOLECULE ACTIVATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SON OF SEVENLESS HOMOLOG 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: SOS-1; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: GTPASE HRAS; COMPND 14 CHAIN: C; COMPND 15 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SOS1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: HRAS, HRAS1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAS, SOS, INHIBITOR, ONCOPROTEIN, PROTEIN-PROTEIN COMPLEX, MAPK, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.PHAN,T.HODGES,S.W.FESIK REVDAT 4 15-NOV-23 6D59 1 REMARK REVDAT 3 04-OCT-23 6D59 1 LINK REVDAT 2 07-NOV-18 6D59 1 JRNL REVDAT 1 19-SEP-18 6D59 0 JRNL AUTH T.R.HODGES,J.R.ABBOTT,A.J.LITTLE,D.SARKAR,J.M.SALOVICH, JRNL AUTH 2 J.E.HOWES,D.T.AKAN,J.SAI,A.L.ARNOLD,C.BROWNING,M.C.BURNS, JRNL AUTH 3 T.SOBOLIK,Q.SUN,Y.BEESETTY,J.A.COKER,D.SCHARN, JRNL AUTH 4 H.STADTMUELLER,O.W.ROSSANESE,J.PHAN,A.G.WATERSON, JRNL AUTH 5 D.B.MCCONNELL,S.W.FESIK JRNL TITL DISCOVERY AND STRUCTURE-BASED OPTIMIZATION OF JRNL TITL 2 BENZIMIDAZOLE-DERIVED ACTIVATORS OF SOS1-MEDIATED NUCLEOTIDE JRNL TITL 3 EXCHANGE ON RAS. JRNL REF J. MED. CHEM. V. 61 8875 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 30205005 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01108 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.BURNS,Q.SUN,R.N.DANIELS,D.CAMPER,J.P.KENNEDY,J.PHAN, REMARK 1 AUTH 2 E.T.OLEJNICZAK,T.LEE,A.G.WATERSON,O.W.ROSSANESE,S.W.FESIK REMARK 1 TITL APPROACH FOR TARGETING RAS WITH SMALL MOLECULES THAT REMARK 1 TITL 2 ACTIVATE SOS-MEDIATED NUCLEOTIDE EXCHANGE. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 111 3401 2014 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 24550516 REMARK 1 DOI 10.1073/PNAS.1315798111 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12RC1_2801: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 166997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2299 - 5.2764 1.00 5570 334 0.1686 0.1808 REMARK 3 2 5.2764 - 4.1902 1.00 5475 244 0.1274 0.1299 REMARK 3 3 4.1902 - 3.6612 1.00 5379 269 0.1309 0.1304 REMARK 3 4 3.6612 - 3.3267 1.00 5379 261 0.1409 0.1557 REMARK 3 5 3.3267 - 3.0884 1.00 5301 321 0.1512 0.1624 REMARK 3 6 3.0884 - 2.9064 1.00 5326 266 0.1578 0.1714 REMARK 3 7 2.9064 - 2.7609 1.00 5298 284 0.1630 0.1680 REMARK 3 8 2.7609 - 2.6408 1.00 5277 293 0.1652 0.2030 REMARK 3 9 2.6408 - 2.5392 1.00 5326 266 0.1567 0.1787 REMARK 3 10 2.5392 - 2.4516 1.00 5256 290 0.1565 0.1793 REMARK 3 11 2.4516 - 2.3749 1.00 5284 291 0.1555 0.1787 REMARK 3 12 2.3749 - 2.3070 1.00 5298 255 0.1576 0.1742 REMARK 3 13 2.3070 - 2.2463 1.00 5258 284 0.1582 0.1792 REMARK 3 14 2.2463 - 2.1915 1.00 5317 215 0.1519 0.1795 REMARK 3 15 2.1915 - 2.1417 1.00 5281 249 0.1492 0.1698 REMARK 3 16 2.1417 - 2.0961 1.00 5328 243 0.1474 0.1704 REMARK 3 17 2.0961 - 2.0542 1.00 5245 278 0.1577 0.1698 REMARK 3 18 2.0542 - 2.0155 1.00 5228 313 0.1597 0.1778 REMARK 3 19 2.0155 - 1.9795 1.00 5189 323 0.1635 0.1890 REMARK 3 20 1.9795 - 1.9459 1.00 5252 316 0.1761 0.2093 REMARK 3 21 1.9459 - 1.9145 1.00 5205 307 0.1836 0.1974 REMARK 3 22 1.9145 - 1.8851 1.00 5264 277 0.1853 0.2061 REMARK 3 23 1.8851 - 1.8574 1.00 5192 302 0.1954 0.2269 REMARK 3 24 1.8574 - 1.8312 1.00 5280 266 0.1930 0.2140 REMARK 3 25 1.8312 - 1.8064 1.00 5279 244 0.1906 0.2127 REMARK 3 26 1.8064 - 1.7830 1.00 5243 251 0.1949 0.2183 REMARK 3 27 1.7830 - 1.7607 1.00 5241 266 0.2091 0.2271 REMARK 3 28 1.7607 - 1.7395 1.00 5226 281 0.2052 0.2228 REMARK 3 29 1.7395 - 1.7193 1.00 5241 285 0.2219 0.2371 REMARK 3 30 1.7193 - 1.7000 0.99 5216 269 0.2396 0.2660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7109 REMARK 3 ANGLE : 0.854 9657 REMARK 3 CHIRALITY : 0.052 1043 REMARK 3 PLANARITY : 0.005 1304 REMARK 3 DIHEDRAL : 14.798 4386 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1212 45.7491 63.4530 REMARK 3 T TENSOR REMARK 3 T11: 0.1639 T22: 0.1866 REMARK 3 T33: 0.1813 T12: 0.0141 REMARK 3 T13: -0.0015 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.0257 L22: 0.0218 REMARK 3 L33: 0.0156 L12: 0.0128 REMARK 3 L13: 0.0218 L23: 0.0090 REMARK 3 S TENSOR REMARK 3 S11: 0.0603 S12: 0.0591 S13: -0.0483 REMARK 3 S21: 0.1124 S22: 0.0348 S23: -0.0428 REMARK 3 S31: 0.1470 S32: 0.1078 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9898 52.0359 62.1598 REMARK 3 T TENSOR REMARK 3 T11: 0.1579 T22: 0.1937 REMARK 3 T33: 0.1887 T12: -0.0310 REMARK 3 T13: 0.0133 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.0805 L22: 0.0221 REMARK 3 L33: 0.0136 L12: -0.0391 REMARK 3 L13: -0.0306 L23: 0.0094 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: 0.0102 S13: 0.0046 REMARK 3 S21: -0.0603 S22: -0.0010 S23: 0.1625 REMARK 3 S31: 0.0341 S32: -0.1714 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2603 45.0986 56.9787 REMARK 3 T TENSOR REMARK 3 T11: 0.1767 T22: 0.2087 REMARK 3 T33: 0.1562 T12: -0.0376 REMARK 3 T13: 0.0203 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.0667 L22: 0.0490 REMARK 3 L33: 0.1007 L12: -0.0068 REMARK 3 L13: 0.0851 L23: 0.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: -0.1816 S13: 0.0102 REMARK 3 S21: 0.0842 S22: 0.0186 S23: -0.0653 REMARK 3 S31: -0.0715 S32: 0.1289 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2745 47.3518 73.3636 REMARK 3 T TENSOR REMARK 3 T11: 0.2335 T22: 0.2477 REMARK 3 T33: 0.1887 T12: -0.0552 REMARK 3 T13: 0.0370 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.0461 L22: 0.0145 REMARK 3 L33: 0.0285 L12: -0.0293 REMARK 3 L13: 0.0273 L23: -0.0083 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: -0.1366 S13: -0.1308 REMARK 3 S21: 0.1515 S22: -0.0568 S23: 0.1494 REMARK 3 S31: 0.0372 S32: -0.0152 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1737 49.3144 71.7964 REMARK 3 T TENSOR REMARK 3 T11: 0.2285 T22: 0.1755 REMARK 3 T33: 0.1805 T12: -0.0243 REMARK 3 T13: -0.0040 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.0563 L22: 0.0206 REMARK 3 L33: 0.0583 L12: 0.0326 REMARK 3 L13: 0.0050 L23: 0.0170 REMARK 3 S TENSOR REMARK 3 S11: 0.0570 S12: -0.2288 S13: -0.0091 REMARK 3 S21: 0.1779 S22: -0.0039 S23: 0.1315 REMARK 3 S31: 0.1802 S32: -0.0010 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3775 64.5041 74.6891 REMARK 3 T TENSOR REMARK 3 T11: 0.2535 T22: 0.2212 REMARK 3 T33: 0.2488 T12: -0.0383 REMARK 3 T13: 0.0644 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 0.0085 L22: 0.0003 REMARK 3 L33: 0.0079 L12: -0.0004 REMARK 3 L13: -0.0049 L23: -0.0021 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: -0.1863 S13: 0.1646 REMARK 3 S21: 0.1778 S22: -0.0489 S23: 0.1852 REMARK 3 S31: 0.0236 S32: -0.0219 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0835 54.4404 76.2546 REMARK 3 T TENSOR REMARK 3 T11: 0.2012 T22: 0.2460 REMARK 3 T33: 0.1455 T12: -0.0532 REMARK 3 T13: -0.0024 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.0797 L22: 0.0810 REMARK 3 L33: 0.0606 L12: 0.0800 REMARK 3 L13: -0.0097 L23: -0.0059 REMARK 3 S TENSOR REMARK 3 S11: 0.0974 S12: -0.2708 S13: 0.1310 REMARK 3 S21: 0.1272 S22: -0.0418 S23: -0.0205 REMARK 3 S31: -0.0903 S32: 0.0118 S33: 0.0028 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7197 66.0901 65.9159 REMARK 3 T TENSOR REMARK 3 T11: 0.1949 T22: 0.1492 REMARK 3 T33: 0.2198 T12: -0.0190 REMARK 3 T13: 0.0246 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.1406 L22: 0.2110 REMARK 3 L33: 0.0897 L12: 0.1838 REMARK 3 L13: -0.1169 L23: -0.1444 REMARK 3 S TENSOR REMARK 3 S11: 0.0552 S12: 0.0292 S13: 0.1996 REMARK 3 S21: -0.0417 S22: -0.0273 S23: 0.1005 REMARK 3 S31: -0.1330 S32: 0.1002 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0218 53.8155 60.8144 REMARK 3 T TENSOR REMARK 3 T11: 0.1769 T22: 0.2080 REMARK 3 T33: 0.1608 T12: -0.0558 REMARK 3 T13: 0.0031 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.0461 L22: 0.0243 REMARK 3 L33: 0.0347 L12: -0.0303 REMARK 3 L13: -0.0364 L23: 0.0107 REMARK 3 S TENSOR REMARK 3 S11: 0.0293 S12: 0.0788 S13: 0.0864 REMARK 3 S21: 0.0673 S22: -0.1045 S23: -0.0635 REMARK 3 S31: -0.1966 S32: 0.2196 S33: 0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 565 THROUGH 699 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4067 30.6417 80.4140 REMARK 3 T TENSOR REMARK 3 T11: 0.1600 T22: 0.1620 REMARK 3 T33: 0.1349 T12: -0.0187 REMARK 3 T13: -0.0018 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.1607 L22: 0.1778 REMARK 3 L33: 0.3430 L12: -0.1295 REMARK 3 L13: -0.2376 L23: 0.0981 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: -0.0176 S13: 0.0269 REMARK 3 S21: 0.0125 S22: 0.0276 S23: -0.0161 REMARK 3 S31: -0.0002 S32: 0.1081 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 700 THROUGH 780 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0186 43.4930 52.6808 REMARK 3 T TENSOR REMARK 3 T11: 0.1640 T22: 0.1961 REMARK 3 T33: 0.1831 T12: -0.0101 REMARK 3 T13: -0.0013 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.0808 L22: 0.0431 REMARK 3 L33: 0.4407 L12: 0.0864 REMARK 3 L13: -0.1368 L23: -0.1008 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: 0.0226 S13: 0.0437 REMARK 3 S21: 0.0041 S22: 0.0306 S23: 0.0626 REMARK 3 S31: -0.0866 S32: -0.1280 S33: -0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 781 THROUGH 1046 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8662 33.1005 33.6701 REMARK 3 T TENSOR REMARK 3 T11: 0.0890 T22: 0.0922 REMARK 3 T33: 0.0931 T12: -0.0243 REMARK 3 T13: 0.0101 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.2000 L22: 0.2621 REMARK 3 L33: 0.6817 L12: 0.0461 REMARK 3 L13: -0.1154 L23: -0.1941 REMARK 3 S TENSOR REMARK 3 S11: -0.0383 S12: 0.0190 S13: -0.0050 REMARK 3 S21: -0.0127 S22: 0.0257 S23: -0.0165 REMARK 3 S31: 0.0168 S32: 0.0203 S33: -0.0003 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5552 12.0633 41.9954 REMARK 3 T TENSOR REMARK 3 T11: 0.1540 T22: 0.1488 REMARK 3 T33: 0.2404 T12: 0.0154 REMARK 3 T13: 0.0070 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.0094 L22: 0.1573 REMARK 3 L33: 0.0445 L12: -0.0403 REMARK 3 L13: 0.0263 L23: -0.0875 REMARK 3 S TENSOR REMARK 3 S11: -0.0759 S12: 0.0193 S13: 0.1066 REMARK 3 S21: 0.1043 S22: 0.0245 S23: -0.1616 REMARK 3 S31: 0.0173 S32: 0.0034 S33: 0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6562 13.5184 50.4279 REMARK 3 T TENSOR REMARK 3 T11: 0.2779 T22: 0.2386 REMARK 3 T33: 0.4473 T12: 0.0386 REMARK 3 T13: -0.0713 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 0.0509 L22: 0.3026 REMARK 3 L33: 0.1308 L12: -0.0764 REMARK 3 L13: -0.0580 L23: -0.0719 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: -0.0230 S13: -0.1489 REMARK 3 S21: 0.3906 S22: -0.0437 S23: 0.0201 REMARK 3 S31: 0.0511 S32: 0.1447 S33: -0.0048 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4644 18.9332 36.4622 REMARK 3 T TENSOR REMARK 3 T11: 0.1530 T22: 0.1400 REMARK 3 T33: 0.2266 T12: -0.0022 REMARK 3 T13: 0.0225 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.0788 L22: 0.1890 REMARK 3 L33: 0.1244 L12: 0.0505 REMARK 3 L13: 0.1048 L23: 0.1190 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: 0.0219 S13: -0.0458 REMARK 3 S21: -0.0242 S22: -0.0479 S23: -0.2296 REMARK 3 S31: -0.0226 S32: 0.0093 S33: -0.0020 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 75 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4331 8.8781 31.8008 REMARK 3 T TENSOR REMARK 3 T11: 0.1742 T22: 0.1471 REMARK 3 T33: 0.1617 T12: 0.0273 REMARK 3 T13: 0.0200 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.0544 L22: 0.3775 REMARK 3 L33: 0.0973 L12: 0.0051 REMARK 3 L13: -0.0863 L23: 0.0576 REMARK 3 S TENSOR REMARK 3 S11: 0.1049 S12: 0.0640 S13: -0.0062 REMARK 3 S21: -0.1415 S22: -0.0523 S23: 0.0282 REMARK 3 S31: -0.0230 S32: 0.0116 S33: 0.0000 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 118 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0376 -1.8645 36.6796 REMARK 3 T TENSOR REMARK 3 T11: 0.2044 T22: 0.1710 REMARK 3 T33: 0.2358 T12: 0.0053 REMARK 3 T13: 0.0145 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 0.0767 L22: 0.0697 REMARK 3 L33: 0.0451 L12: -0.0190 REMARK 3 L13: 0.0583 L23: -0.0178 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: -0.0366 S13: 0.0107 REMARK 3 S21: -0.0831 S22: -0.0554 S23: 0.2605 REMARK 3 S31: 0.1171 S32: -0.0491 S33: 0.0012 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 138 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4405 2.3513 39.9218 REMARK 3 T TENSOR REMARK 3 T11: 0.1565 T22: 0.1382 REMARK 3 T33: 0.1950 T12: 0.0344 REMARK 3 T13: 0.0095 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.1002 L22: 0.1531 REMARK 3 L33: 0.1301 L12: -0.0294 REMARK 3 L13: 0.0630 L23: 0.0104 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: -0.0220 S13: 0.0019 REMARK 3 S21: -0.0142 S22: -0.0352 S23: -0.1355 REMARK 3 S31: 0.0772 S32: -0.0383 S33: 0.0053 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000234013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 167022 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NYI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 2.0 M SODIUM REMARK 280 FORMATE, PH 4.0, PH 1, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 92.05350 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 92.05350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.71300 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 92.05350 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 92.05350 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 89.71300 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 92.05350 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 92.05350 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 89.71300 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 92.05350 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 92.05350 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 89.71300 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 92.05350 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 92.05350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 89.71300 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 92.05350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 92.05350 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 89.71300 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 92.05350 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 92.05350 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 89.71300 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 92.05350 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 92.05350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.71300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2603 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2850 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN B 591 REMARK 465 MET B 592 REMARK 465 GLN B 593 REMARK 465 PRO B 594 REMARK 465 LYS B 595 REMARK 465 ALA B 596 REMARK 465 ARG B 744 REMARK 465 ASP B 745 REMARK 465 ASN B 746 REMARK 465 GLY B 747 REMARK 465 PRO B 748 REMARK 465 GLY B 749 REMARK 465 HIS B 750 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 468 O HOH C 511 1.80 REMARK 500 OE1 GLN C 95 O HOH C 301 1.82 REMARK 500 O HOH A 427 O HOH A 448 1.83 REMARK 500 O HOH C 306 O HOH C 448 1.84 REMARK 500 O HOH B 2804 O HOH B 2816 1.88 REMARK 500 O HOH C 330 O HOH C 333 1.89 REMARK 500 O HOH A 427 O HOH A 490 1.94 REMARK 500 O HOH B 2190 O HOH B 2246 1.96 REMARK 500 O HOH C 331 O HOH C 417 1.96 REMARK 500 O HOH B 2149 O HOH B 2480 1.98 REMARK 500 O HOH B 2725 O HOH B 2769 2.00 REMARK 500 O HOH C 476 O HOH C 488 2.01 REMARK 500 OE1 GLU B 680 O HOH B 2101 2.02 REMARK 500 O HOH B 2224 O HOH B 2602 2.02 REMARK 500 O HOH B 2272 O HOH B 2624 2.02 REMARK 500 O HOH C 312 O HOH C 483 2.02 REMARK 500 O HOH B 2555 O HOH B 2634 2.02 REMARK 500 NH1 ARG C 68 O HOH C 302 2.03 REMARK 500 O HOH B 2179 O HOH B 2658 2.03 REMARK 500 O HOH C 310 O HOH C 457 2.04 REMARK 500 O HOH B 2117 O HOH B 2560 2.04 REMARK 500 O HOH B 2116 O HOH B 2572 2.04 REMARK 500 O HOH C 400 O HOH C 516 2.06 REMARK 500 O HOH A 486 O HOH B 2651 2.06 REMARK 500 O HOH B 2648 O HOH B 2687 2.07 REMARK 500 O HOH B 2826 O HOH B 2852 2.08 REMARK 500 O HOH A 430 O HOH A 476 2.09 REMARK 500 NE2 GLN B 972 O HOH B 2102 2.09 REMARK 500 O HOH B 2684 O HOH B 2776 2.10 REMARK 500 O HOH B 2785 O HOH B 2818 2.12 REMARK 500 O HOH A 369 O HOH B 2639 2.12 REMARK 500 NH2 ARG B 982 O HOH B 2103 2.14 REMARK 500 O HOH A 308 O HOH A 428 2.14 REMARK 500 O HOH B 2516 O HOH B 2758 2.16 REMARK 500 O HOH A 305 O HOH A 475 2.17 REMARK 500 O HOH B 2493 O HOH C 508 2.17 REMARK 500 O HOH B 2691 O HOH B 2708 2.17 REMARK 500 O HOH B 2319 O HOH B 2408 2.17 REMARK 500 O HOH B 2199 O HOH B 2659 2.19 REMARK 500 O HOH B 2218 O HOH B 2694 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2411 O HOH C 343 3555 1.75 REMARK 500 O HOH B 2108 O HOH B 2343 3555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -63.52 -99.27 REMARK 500 ARG A 149 -3.77 82.68 REMARK 500 HIS B 764 -115.99 -123.38 REMARK 500 HIS B 770 63.83 -103.48 REMARK 500 GLN C 25 151.01 -48.86 REMARK 500 ASN C 26 99.30 -45.24 REMARK 500 GLU C 37 116.77 -30.61 REMARK 500 TYR C 40 15.77 -140.75 REMARK 500 TYR C 40 15.77 -140.73 REMARK 500 ASP C 119 -169.96 -167.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN C 25 ASN C 26 143.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 82.5 REMARK 620 3 GNP A 201 O1G 172.7 90.3 REMARK 620 4 GNP A 201 O1B 93.9 174.0 93.4 REMARK 620 5 HOH A 320 O 85.4 90.8 93.7 93.7 REMARK 620 6 HOH A 362 O 89.6 87.5 91.1 87.7 174.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 87 OG1 REMARK 620 2 THR C 124 OG1 97.3 REMARK 620 3 HOH C 471 O 67.9 96.5 REMARK 620 4 HOH C 481 O 114.6 140.8 115.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FVJ B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 202 DBREF 6D59 A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 6D59 B 566 1046 UNP Q07889 SOS1_HUMAN 566 1046 DBREF 6D59 C 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 6D59 GLY A 0 UNP P01112 EXPRESSION TAG SEQADV 6D59 ALA A 64 UNP P01112 TYR 64 CONFLICT SEQADV 6D59 GLY B 565 UNP Q07889 EXPRESSION TAG SEQADV 6D59 GLY C 0 UNP P01112 EXPRESSION TAG SEQRES 1 A 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CSO SEQRES 5 A 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU ALA SEQRES 6 A 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 A 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 A 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 A 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 482 GLY GLN MET ARG LEU PRO SER ALA ASP VAL TYR ARG PHE SEQRES 2 B 482 ALA GLU PRO ASP SER GLU GLU ASN ILE ILE PHE GLU GLU SEQRES 3 B 482 ASN MET GLN PRO LYS ALA GLY ILE PRO ILE ILE LYS ALA SEQRES 4 B 482 GLY THR VAL ILE LYS LEU ILE GLU ARG LEU THR TYR HIS SEQRES 5 B 482 MET TYR ALA ASP PRO ASN PHE VAL ARG THR PHE LEU THR SEQRES 6 B 482 THR TYR ARG SER PHE CYS LYS PRO GLN GLU LEU LEU SER SEQRES 7 B 482 LEU ILE ILE GLU ARG PHE GLU ILE PRO GLU PRO GLU PRO SEQRES 8 B 482 THR GLU ALA ASP ARG ILE ALA ILE GLU ASN GLY ASP GLN SEQRES 9 B 482 PRO LEU SER ALA GLU LEU LYS ARG PHE ARG LYS GLU TYR SEQRES 10 B 482 ILE GLN PRO VAL GLN LEU ARG VAL LEU ASN VAL CYS ARG SEQRES 11 B 482 HIS TRP VAL GLU HIS HIS PHE TYR ASP PHE GLU ARG ASP SEQRES 12 B 482 ALA TYR LEU LEU GLN ARG MET GLU GLU PHE ILE GLY THR SEQRES 13 B 482 VAL ARG GLY LYS ALA MET LYS LYS TRP VAL GLU SER ILE SEQRES 14 B 482 THR LYS ILE ILE GLN ARG LYS LYS ILE ALA ARG ASP ASN SEQRES 15 B 482 GLY PRO GLY HIS ASN ILE THR PHE GLN SER SER PRO PRO SEQRES 16 B 482 THR VAL GLU TRP HIS ILE SER ARG PRO GLY HIS ILE GLU SEQRES 17 B 482 THR PHE ASP LEU LEU THR LEU HIS PRO ILE GLU ILE ALA SEQRES 18 B 482 ARG GLN LEU THR LEU LEU GLU SER ASP LEU TYR ARG ALA SEQRES 19 B 482 VAL GLN PRO SER GLU LEU VAL GLY SER VAL TRP THR LYS SEQRES 20 B 482 GLU ASP LYS GLU ILE ASN SER PRO ASN LEU LEU LYS MET SEQRES 21 B 482 ILE ARG HIS THR THR ASN LEU THR LEU TRP PHE GLU LYS SEQRES 22 B 482 CYS ILE VAL GLU THR GLU ASN LEU GLU GLU ARG VAL ALA SEQRES 23 B 482 VAL VAL SER ARG ILE ILE GLU ILE LEU GLN VAL PHE GLN SEQRES 24 B 482 GLU LEU ASN ASN PHE ASN GLY VAL LEU GLU VAL VAL SER SEQRES 25 B 482 ALA MET ASN SER SER PRO VAL TYR ARG LEU ASP HIS THR SEQRES 26 B 482 PHE GLU GLN ILE PRO SER ARG GLN LYS LYS ILE LEU GLU SEQRES 27 B 482 GLU ALA HIS GLU LEU SER GLU ASP HIS TYR LYS LYS TYR SEQRES 28 B 482 LEU ALA LYS LEU ARG SER ILE ASN PRO PRO CYS VAL PRO SEQRES 29 B 482 PHE PHE GLY ILE TYR LEU THR ASN ILE LEU LYS THR GLU SEQRES 30 B 482 GLU GLY ASN PRO GLU VAL LEU LYS ARG HIS GLY LYS GLU SEQRES 31 B 482 LEU ILE ASN PHE SER LYS ARG ARG LYS VAL ALA GLU ILE SEQRES 32 B 482 THR GLY GLU ILE GLN GLN TYR GLN ASN GLN PRO TYR CYS SEQRES 33 B 482 LEU ARG VAL GLU SER ASP ILE LYS ARG PHE PHE GLU ASN SEQRES 34 B 482 LEU ASN PRO MET GLY ASN SER MET GLU LYS GLU PHE THR SEQRES 35 B 482 ASP TYR LEU PHE ASN LYS SER LEU GLU ILE GLU PRO ARG SEQRES 36 B 482 ASN PRO LYS PRO LEU PRO ARG PHE PRO LYS LYS TYR SER SEQRES 37 B 482 TYR PRO LEU LYS SER PRO GLY VAL ARG PRO SER ASN PRO SEQRES 38 B 482 ARG SEQRES 1 C 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 C 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 C 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 C 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 C 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 C 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 C 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 C 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 C 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 C 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 C 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 C 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 C 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS MODRES 6D59 CSO A 51 CYS MODIFIED RESIDUE HET CSO A 51 7 HET GNP A 201 32 HET MG A 202 1 HET FVJ B2001 33 HET FMT B2002 3 HET FMT B2003 3 HET FMT B2004 3 HET FMT B2005 3 HET FMT B2006 3 HET GOL B2007 6 HET GOL B2008 6 HET FMT C 201 3 HET NA C 202 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM FVJ 6-CHLORO-4-(3,5-DIMETHYL-1H-PYRAZOL-4-YL)-1-[(4-FLUORO- HETNAM 2 FVJ 3,5-DIMETHYLPHENYL)METHYL]-2-(PIPERAZIN-1-YL)-1H- HETNAM 3 FVJ BENZIMIDAZOLE HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 MG MG 2+ FORMUL 6 FVJ C25 H28 CL F N6 FORMUL 7 FMT 6(C H2 O2) FORMUL 12 GOL 2(C3 H8 O3) FORMUL 15 NA NA 1+ FORMUL 16 HOH *1170(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 SER A 65 5 5 HELIX 3 AA3 ARG A 68 GLY A 75 1 8 HELIX 4 AA4 ASN A 86 ASP A 92 1 7 HELIX 5 AA5 ASP A 92 ASP A 105 1 14 HELIX 6 AA6 GLU A 126 GLY A 138 1 13 HELIX 7 AA7 GLY A 151 GLN A 165 1 15 HELIX 8 AA8 TYR B 575 GLU B 579 5 5 HELIX 9 AA9 THR B 605 THR B 614 1 10 HELIX 10 AB1 ASP B 620 TYR B 631 1 12 HELIX 11 AB2 ARG B 632 PHE B 634 5 3 HELIX 12 AB3 LYS B 636 GLU B 649 1 14 HELIX 13 AB4 THR B 656 ASN B 665 1 10 HELIX 14 AB5 SER B 671 TYR B 681 1 11 HELIX 15 AB6 TYR B 681 HIS B 700 1 20 HELIX 16 AB7 PHE B 701 ASP B 707 1 7 HELIX 17 AB8 ASP B 707 THR B 720 1 14 HELIX 18 AB9 MET B 726 ILE B 742 1 17 HELIX 19 AC1 HIS B 770 PHE B 774 5 5 HELIX 20 AC2 HIS B 780 ALA B 798 1 19 HELIX 21 AC3 GLN B 800 LYS B 811 5 12 HELIX 22 AC4 ASP B 813 SER B 818 1 6 HELIX 23 AC5 SER B 818 GLU B 841 1 24 HELIX 24 AC6 ASN B 844 LEU B 865 1 22 HELIX 25 AC7 ASN B 867 ASN B 879 1 13 HELIX 26 AC8 SER B 880 ARG B 885 1 6 HELIX 27 AC9 LEU B 886 ILE B 893 1 8 HELIX 28 AD1 PRO B 894 LEU B 907 1 14 HELIX 29 AD2 SER B 908 ARG B 920 1 13 HELIX 30 AD3 PHE B 930 GLY B 943 1 14 HELIX 31 AD4 PHE B 958 GLN B 975 1 18 HELIX 32 AD5 GLU B 984 ASN B 993 1 10 HELIX 33 AD6 MET B 1001 GLU B 1017 1 17 HELIX 34 AD7 SER C 17 GLN C 25 1 9 HELIX 35 AD8 TYR C 64 ALA C 66 5 3 HELIX 36 AD9 MET C 67 THR C 74 1 8 HELIX 37 AE1 ASN C 86 ASP C 92 1 7 HELIX 38 AE2 ASP C 92 ASP C 105 1 14 HELIX 39 AE3 GLU C 126 GLY C 138 1 13 HELIX 40 AE4 GLY C 151 GLN C 165 1 15 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N TYR A 4 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 4 ILE B 586 PHE B 588 0 SHEET 2 AA2 4 ILE B 601 GLY B 604 -1 O ALA B 603 N ILE B 587 SHEET 3 AA2 4 LYS B 953 ASN B 957 -1 O ILE B 956 N GLY B 604 SHEET 4 AA2 4 VAL B 947 ARG B 950 -1 N LEU B 948 O LEU B 955 SHEET 1 AA3 6 ARG C 41 ILE C 46 0 SHEET 2 AA3 6 GLU C 49 ASP C 57 -1 O LEU C 53 N LYS C 42 SHEET 3 AA3 6 THR C 2 GLY C 10 1 N LEU C 6 O LEU C 56 SHEET 4 AA3 6 GLY C 77 ALA C 83 1 O VAL C 81 N VAL C 9 SHEET 5 AA3 6 MET C 111 LYS C 117 1 O ASN C 116 N PHE C 82 SHEET 6 AA3 6 TYR C 141 SER C 145 1 O THR C 144 N LYS C 117 LINK C THR A 50 N CSO A 51 1555 1555 1.32 LINK C CSO A 51 N LEU A 52 1555 1555 1.32 LINK OG SER A 17 MG MG A 202 1555 1555 2.08 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.08 LINK O1G GNP A 201 MG MG A 202 1555 1555 2.02 LINK O1B GNP A 201 MG MG A 202 1555 1555 2.05 LINK MG MG A 202 O HOH A 320 1555 1555 2.02 LINK MG MG A 202 O HOH A 362 1555 1555 2.11 LINK OG1BTHR C 87 NA NA C 202 1555 1555 3.12 LINK OG1 THR C 124 NA NA C 202 1555 1555 3.08 LINK NA NA C 202 O HOH C 471 1555 1555 2.63 LINK NA NA C 202 O HOH C 481 1555 1555 2.20 CISPEP 1 PRO B 924 PRO B 925 0 12.38 CISPEP 2 ASN B 1020 PRO B 1021 0 7.21 SITE 1 AC1 31 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 31 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 31 VAL A 29 ASP A 30 GLU A 31 TYR A 32 SITE 4 AC1 31 PRO A 34 THR A 35 GLY A 60 GLN A 61 SITE 5 AC1 31 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 6 AC1 31 SER A 145 ALA A 146 LYS A 147 MG A 202 SITE 7 AC1 31 HOH A 320 HOH A 358 HOH A 362 HOH A 366 SITE 8 AC1 31 HOH A 387 HOH A 418 HOH A 439 SITE 1 AC2 5 SER A 17 THR A 35 GNP A 201 HOH A 320 SITE 2 AC2 5 HOH A 362 SITE 1 AC3 15 VAL B 852 MET B 878 ASN B 879 VAL B 883 SITE 2 AC3 15 TYR B 884 ASP B 887 PHE B 890 ILE B 893 SITE 3 AC3 15 LYS B 898 LEU B 901 GLU B 902 HIS B 905 SITE 4 AC3 15 HOH B2461 HOH B2482 HOH B2518 SITE 1 AC4 7 GLN B 566 MET B 567 HIS B 616 MET B 617 SITE 2 AC4 7 HOH B2234 HOH B2242 HOH B2354 SITE 1 AC5 3 ARG A 128 ARG B 767 PRO B 768 SITE 1 AC6 7 GLU A 37 MET A 67 GLN A 70 ALA B 619 SITE 2 AC6 7 ARG B 688 HOH B2151 HOH B2195 SITE 1 AC7 6 GLU B 611 TYR B 615 HIS B 616 ARG B 647 SITE 2 AC7 6 TYR B 681 HOH B2298 SITE 1 AC8 1 TYR B1031 SITE 1 AC9 5 SER B 793 ASP B 794 PRO B 978 TYR B 979 SITE 2 AC9 5 HOH B2314 SITE 1 AD1 5 ARG B 786 GLU B 864 VAL B1040 HOH B2105 SITE 2 AD1 5 HOH B2201 SITE 1 AD2 7 LEU B 938 GLY C 15 LYS C 16 SER C 17 SITE 2 AD2 7 HOH C 309 HOH C 363 HOH C 438 SITE 1 AD3 6 ASN C 85 ASN C 86 THR C 87 THR C 124 SITE 2 AD3 6 HOH C 471 HOH C 481 CRYST1 184.107 184.107 179.426 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005573 0.00000