HEADER SIGNALING PROTEIN 19-APR-18 6D5G TITLE RAS:SOS:RAS IN COMPLEX WITH A SMALL MOLECULE ACTIVATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SON OF SEVENLESS HOMOLOG 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: SOS-1; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: GTPASE HRAS; COMPND 14 CHAIN: C; COMPND 15 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SOS1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: HRAS, HRAS1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAS, SOS, INHIBITOR, ONCOPROTEIN, PROTEIN-PROTEIN COMPLEX, MAPK, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.PHAN,T.HODGES,S.W.FESIK REVDAT 4 15-NOV-23 6D5G 1 REMARK REVDAT 3 04-OCT-23 6D5G 1 REMARK REVDAT 2 07-NOV-18 6D5G 1 JRNL REVDAT 1 19-SEP-18 6D5G 0 JRNL AUTH T.R.HODGES,J.R.ABBOTT,A.J.LITTLE,D.SARKAR,J.M.SALOVICH, JRNL AUTH 2 J.E.HOWES,D.T.AKAN,J.SAI,A.L.ARNOLD,C.BROWNING,M.C.BURNS, JRNL AUTH 3 T.SOBOLIK,Q.SUN,Y.BEESETTY,J.A.COKER,D.SCHARN, JRNL AUTH 4 H.STADTMUELLER,O.W.ROSSANESE,J.PHAN,A.G.WATERSON, JRNL AUTH 5 D.B.MCCONNELL,S.W.FESIK JRNL TITL DISCOVERY AND STRUCTURE-BASED OPTIMIZATION OF JRNL TITL 2 BENZIMIDAZOLE-DERIVED ACTIVATORS OF SOS1-MEDIATED NUCLEOTIDE JRNL TITL 3 EXCHANGE ON RAS. JRNL REF J. MED. CHEM. V. 61 8875 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 30205005 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01108 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.BURNS,Q.SUN,R.N.DANIELS,D.CAMPER,J.P.KENNEDY,J.PHAN, REMARK 1 AUTH 2 E.T.OLEJNICZAK,T.LEE,A.G.WATERSON,O.W.ROSSANESE,S.W.FESIK REMARK 1 TITL APPROACH FOR TARGETING RAS WITH SMALL MOLECULES THAT REMARK 1 TITL 2 ACTIVATE SOS-MEDIATED NUCLEOTIDE EXCHANGE. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 111 3401 2014 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 24550516 REMARK 1 DOI 10.1073/PNAS.1315798111 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 114808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 5835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8538 - 5.9588 1.00 3892 198 0.1667 0.1877 REMARK 3 2 5.9588 - 4.7309 1.00 3733 210 0.1523 0.1681 REMARK 3 3 4.7309 - 4.1332 1.00 3691 203 0.1201 0.1420 REMARK 3 4 4.1332 - 3.7555 1.00 3672 200 0.1251 0.1302 REMARK 3 5 3.7555 - 3.4864 1.00 3699 177 0.1313 0.1390 REMARK 3 6 3.4864 - 3.2809 1.00 3654 193 0.1457 0.1531 REMARK 3 7 3.2809 - 3.1166 1.00 3645 217 0.1525 0.1510 REMARK 3 8 3.1166 - 2.9810 1.00 3611 213 0.1611 0.1678 REMARK 3 9 2.9810 - 2.8662 1.00 3615 208 0.1640 0.1774 REMARK 3 10 2.8662 - 2.7673 1.00 3627 209 0.1703 0.1795 REMARK 3 11 2.7673 - 2.6808 1.00 3615 208 0.1717 0.1909 REMARK 3 12 2.6808 - 2.6042 1.00 3663 182 0.1644 0.2047 REMARK 3 13 2.6042 - 2.5356 1.00 3594 189 0.1619 0.2011 REMARK 3 14 2.5356 - 2.4738 1.00 3643 189 0.1620 0.1689 REMARK 3 15 2.4738 - 2.4175 1.00 3596 196 0.1631 0.1882 REMARK 3 16 2.4175 - 2.3661 1.00 3612 196 0.1603 0.1682 REMARK 3 17 2.3661 - 2.3187 1.00 3662 162 0.1606 0.2028 REMARK 3 18 2.3187 - 2.2750 1.00 3607 173 0.1648 0.1907 REMARK 3 19 2.2750 - 2.2344 1.00 3636 187 0.1617 0.1945 REMARK 3 20 2.2344 - 2.1965 1.00 3622 174 0.1614 0.1849 REMARK 3 21 2.1965 - 2.1611 1.00 3594 208 0.1613 0.1640 REMARK 3 22 2.1611 - 2.1278 1.00 3564 203 0.1602 0.2018 REMARK 3 23 2.1278 - 2.0965 1.00 3620 171 0.1645 0.1916 REMARK 3 24 2.0965 - 2.0670 1.00 3603 194 0.1667 0.1882 REMARK 3 25 2.0670 - 2.0391 1.00 3639 164 0.1766 0.1812 REMARK 3 26 2.0391 - 2.0126 1.00 3566 216 0.1759 0.2157 REMARK 3 27 2.0126 - 1.9874 1.00 3575 213 0.1863 0.2101 REMARK 3 28 1.9874 - 1.9635 1.00 3606 197 0.1939 0.2107 REMARK 3 29 1.9635 - 1.9406 1.00 3573 192 0.2016 0.2315 REMARK 3 30 1.9406 - 1.9188 0.98 3544 193 0.1994 0.2481 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7045 REMARK 3 ANGLE : 0.871 9565 REMARK 3 CHIRALITY : 0.050 1036 REMARK 3 PLANARITY : 0.005 1260 REMARK 3 DIHEDRAL : 14.897 4377 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8600 45.5841 63.3361 REMARK 3 T TENSOR REMARK 3 T11: 0.1874 T22: 0.2161 REMARK 3 T33: 0.2008 T12: 0.0128 REMARK 3 T13: 0.0035 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.0143 L22: 0.0087 REMARK 3 L33: 0.0034 L12: 0.0095 REMARK 3 L13: 0.0089 L23: 0.0053 REMARK 3 S TENSOR REMARK 3 S11: 0.0827 S12: 0.0452 S13: -0.0473 REMARK 3 S21: 0.0769 S22: 0.0033 S23: -0.0099 REMARK 3 S31: 0.1176 S32: 0.0952 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5546 51.9386 61.7667 REMARK 3 T TENSOR REMARK 3 T11: 0.1940 T22: 0.2387 REMARK 3 T33: 0.2382 T12: -0.0315 REMARK 3 T13: 0.0051 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.0500 L22: 0.0080 REMARK 3 L33: 0.0011 L12: -0.0026 REMARK 3 L13: 0.0036 L23: 0.0020 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.0305 S13: -0.0214 REMARK 3 S21: -0.0508 S22: 0.0223 S23: 0.1498 REMARK 3 S31: 0.0557 S32: -0.2225 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0288 44.9906 56.8054 REMARK 3 T TENSOR REMARK 3 T11: 0.2041 T22: 0.2383 REMARK 3 T33: 0.1837 T12: -0.0466 REMARK 3 T13: 0.0240 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.0322 L22: 0.0276 REMARK 3 L33: 0.0483 L12: -0.0027 REMARK 3 L13: 0.0494 L23: 0.0102 REMARK 3 S TENSOR REMARK 3 S11: 0.0285 S12: -0.1051 S13: 0.0105 REMARK 3 S21: 0.1152 S22: 0.0264 S23: -0.0493 REMARK 3 S31: -0.0856 S32: 0.1356 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8627 45.8850 73.3238 REMARK 3 T TENSOR REMARK 3 T11: 0.2658 T22: 0.2421 REMARK 3 T33: 0.2142 T12: -0.0386 REMARK 3 T13: 0.0085 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.0328 L22: 0.0146 REMARK 3 L33: 0.0385 L12: 0.0151 REMARK 3 L13: 0.0289 L23: -0.0010 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.0920 S13: -0.1173 REMARK 3 S21: 0.1404 S22: -0.0136 S23: 0.0648 REMARK 3 S31: 0.1555 S32: -0.0120 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1302 57.0441 74.4940 REMARK 3 T TENSOR REMARK 3 T11: 0.2145 T22: 0.2342 REMARK 3 T33: 0.1872 T12: -0.0457 REMARK 3 T13: 0.0184 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 0.1603 L22: 0.0924 REMARK 3 L33: 0.0385 L12: 0.1231 REMARK 3 L13: 0.0026 L23: 0.0047 REMARK 3 S TENSOR REMARK 3 S11: 0.1136 S12: -0.2510 S13: 0.1268 REMARK 3 S21: 0.1138 S22: -0.0157 S23: 0.0064 REMARK 3 S31: -0.0749 S32: 0.0544 S33: 0.0155 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4778 65.8764 65.7285 REMARK 3 T TENSOR REMARK 3 T11: 0.2366 T22: 0.1804 REMARK 3 T33: 0.2583 T12: -0.0247 REMARK 3 T13: 0.0244 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.0642 L22: 0.0743 REMARK 3 L33: 0.0546 L12: 0.0591 REMARK 3 L13: -0.0140 L23: -0.0705 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: 0.0229 S13: 0.2139 REMARK 3 S21: -0.0453 S22: -0.0213 S23: 0.0836 REMARK 3 S31: -0.1435 S32: 0.0948 S33: 0.0015 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3800 53.9688 60.7294 REMARK 3 T TENSOR REMARK 3 T11: 0.2104 T22: 0.2316 REMARK 3 T33: 0.2149 T12: -0.0565 REMARK 3 T13: 0.0130 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0169 L22: 0.0058 REMARK 3 L33: 0.0142 L12: -0.0172 REMARK 3 L13: -0.0209 L23: 0.0057 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: 0.0431 S13: 0.1190 REMARK 3 S21: 0.0324 S22: -0.1400 S23: -0.1539 REMARK 3 S31: -0.1188 S32: 0.2005 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 565 THROUGH 723 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7105 30.9605 77.7732 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.1893 REMARK 3 T33: 0.1740 T12: -0.0184 REMARK 3 T13: 0.0036 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.0803 L22: 0.1675 REMARK 3 L33: 0.3608 L12: -0.0889 REMARK 3 L13: -0.2185 L23: 0.1004 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: -0.0010 S13: 0.0121 REMARK 3 S21: 0.0207 S22: 0.0068 S23: 0.0262 REMARK 3 S31: 0.0184 S32: 0.0123 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 724 THROUGH 768 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8836 49.5218 51.7552 REMARK 3 T TENSOR REMARK 3 T11: 0.2386 T22: 0.2477 REMARK 3 T33: 0.2501 T12: -0.0183 REMARK 3 T13: 0.0048 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: -0.0095 L22: 0.1190 REMARK 3 L33: 0.0916 L12: 0.0059 REMARK 3 L13: 0.0064 L23: 0.1240 REMARK 3 S TENSOR REMARK 3 S11: 0.1191 S12: 0.0123 S13: 0.0979 REMARK 3 S21: 0.0342 S22: 0.0870 S23: 0.1006 REMARK 3 S31: -0.2150 S32: -0.0948 S33: -0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 769 THROUGH 1046 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3800 33.5037 33.0701 REMARK 3 T TENSOR REMARK 3 T11: 0.1340 T22: 0.1362 REMARK 3 T33: 0.1390 T12: -0.0248 REMARK 3 T13: 0.0087 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.1814 L22: 0.2833 REMARK 3 L33: 0.5727 L12: 0.0724 REMARK 3 L13: -0.1658 L23: -0.2003 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: 0.0248 S13: -0.0046 REMARK 3 S21: -0.0173 S22: 0.0261 S23: -0.0125 REMARK 3 S31: 0.0121 S32: 0.0090 S33: -0.0024 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6122 12.2565 41.7444 REMARK 3 T TENSOR REMARK 3 T11: 0.1968 T22: 0.1776 REMARK 3 T33: 0.2642 T12: 0.0134 REMARK 3 T13: 0.0130 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.0197 L22: 0.0604 REMARK 3 L33: 0.0389 L12: -0.0115 REMARK 3 L13: 0.0032 L23: -0.0586 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.0565 S13: 0.1116 REMARK 3 S21: 0.0622 S22: -0.0142 S23: -0.1522 REMARK 3 S31: 0.0090 S32: 0.0091 S33: -0.0007 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1033 12.6219 55.9037 REMARK 3 T TENSOR REMARK 3 T11: 0.4305 T22: 0.2389 REMARK 3 T33: 0.5562 T12: 0.0195 REMARK 3 T13: -0.1012 T23: 0.0803 REMARK 3 L TENSOR REMARK 3 L11: -0.0000 L22: 0.0103 REMARK 3 L33: 0.0041 L12: -0.0074 REMARK 3 L13: 0.0014 L23: -0.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: 0.0224 S13: -0.0714 REMARK 3 S21: 0.0803 S22: 0.0991 S23: 0.0490 REMARK 3 S31: 0.2040 S32: -0.0026 S33: 0.0002 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 35 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8221 14.2627 46.1437 REMARK 3 T TENSOR REMARK 3 T11: 0.3105 T22: 0.3044 REMARK 3 T33: 0.4960 T12: 0.0511 REMARK 3 T13: -0.0625 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.0106 L22: 0.0223 REMARK 3 L33: 0.0165 L12: 0.0234 REMARK 3 L13: -0.0258 L23: -0.0165 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.0028 S13: 0.0115 REMARK 3 S21: 0.0153 S22: -0.1123 S23: -0.0972 REMARK 3 S31: -0.1195 S32: 0.1173 S33: -0.0010 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3545 18.9255 36.3819 REMARK 3 T TENSOR REMARK 3 T11: 0.1742 T22: 0.1446 REMARK 3 T33: 0.2524 T12: -0.0024 REMARK 3 T13: 0.0320 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.1008 L22: 0.1232 REMARK 3 L33: 0.3918 L12: -0.0381 REMARK 3 L13: -0.1032 L23: 0.2127 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: 0.0994 S13: -0.0353 REMARK 3 S21: -0.0657 S22: -0.0720 S23: -0.1979 REMARK 3 S31: -0.0205 S32: -0.0158 S33: -0.0518 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 75 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3594 8.9331 31.7132 REMARK 3 T TENSOR REMARK 3 T11: 0.2207 T22: 0.1782 REMARK 3 T33: 0.1937 T12: 0.0319 REMARK 3 T13: 0.0189 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0429 L22: 0.1809 REMARK 3 L33: 0.0637 L12: -0.0068 REMARK 3 L13: -0.0369 L23: 0.0067 REMARK 3 S TENSOR REMARK 3 S11: 0.1177 S12: 0.0980 S13: -0.0357 REMARK 3 S21: -0.1571 S22: -0.0819 S23: 0.0204 REMARK 3 S31: -0.0085 S32: 0.0125 S33: 0.0078 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 118 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0369 -1.7373 36.5950 REMARK 3 T TENSOR REMARK 3 T11: 0.2299 T22: 0.1802 REMARK 3 T33: 0.2726 T12: 0.0152 REMARK 3 T13: 0.0072 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.0247 L22: 0.0296 REMARK 3 L33: 0.0188 L12: -0.0039 REMARK 3 L13: 0.0110 L23: -0.0148 REMARK 3 S TENSOR REMARK 3 S11: 0.1081 S12: 0.0104 S13: -0.0901 REMARK 3 S21: -0.1183 S22: -0.0933 S23: 0.2645 REMARK 3 S31: 0.0786 S32: 0.0175 S33: -0.0001 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 138 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3438 2.4297 39.7857 REMARK 3 T TENSOR REMARK 3 T11: 0.1838 T22: 0.1539 REMARK 3 T33: 0.2366 T12: 0.0356 REMARK 3 T13: 0.0195 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.2524 L22: 0.1677 REMARK 3 L33: 0.3569 L12: 0.0676 REMARK 3 L13: 0.2374 L23: 0.1692 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: -0.0214 S13: -0.0517 REMARK 3 S21: -0.0386 S22: -0.0690 S23: -0.1856 REMARK 3 S31: 0.0851 S32: -0.0100 S33: 0.0096 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D5G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000234022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114822 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NYI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 2.0 M SODIUM REMARK 280 FORMATE, PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 91.52500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 91.52500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.39200 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 91.52500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 91.52500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 89.39200 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 91.52500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 91.52500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 89.39200 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 91.52500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 91.52500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 89.39200 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 91.52500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 91.52500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 89.39200 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 91.52500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 91.52500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 89.39200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 91.52500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 91.52500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 89.39200 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 91.52500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 91.52500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.39200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2824 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN B 591 REMARK 465 MET B 592 REMARK 465 GLN B 593 REMARK 465 PRO B 594 REMARK 465 LYS B 595 REMARK 465 ALA B 596 REMARK 465 ARG B 744 REMARK 465 ASP B 745 REMARK 465 ASN B 746 REMARK 465 GLY B 747 REMARK 465 PRO B 748 REMARK 465 GLY B 749 REMARK 465 HIS B 750 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 454 O HOH C 475 1.83 REMARK 500 O HOH B 2445 O HOH B 2704 1.83 REMARK 500 O HOH B 2397 O HOH B 2631 1.85 REMARK 500 O HOH B 2198 O HOH B 2261 1.87 REMARK 500 O HOH B 2109 O HOH B 2396 1.88 REMARK 500 OE1 GLU A 91 O HOH A 301 1.89 REMARK 500 O HOH B 2614 O HOH B 2724 1.89 REMARK 500 O HOH B 2415 O HOH B 2618 1.91 REMARK 500 O HOH B 2621 O HOH B 2750 1.91 REMARK 500 OE1 GLN B 892 O HOH B 2101 1.91 REMARK 500 O HOH C 428 O HOH C 467 1.92 REMARK 500 O HOH A 401 O HOH B 2602 1.92 REMARK 500 OE1 GLN A 165 O HOH A 302 1.94 REMARK 500 O HOH A 433 O HOH A 474 1.94 REMARK 500 O HOH B 2784 O HOH B 2809 1.95 REMARK 500 O HOH B 2121 O HOH B 2403 1.96 REMARK 500 O HOH B 2818 O HOH B 2825 1.96 REMARK 500 O HOH B 2708 O HOH B 2750 1.96 REMARK 500 O HOH B 2792 O HOH B 2808 1.97 REMARK 500 O HOH A 426 O HOH A 452 1.98 REMARK 500 OE1 GLU B 812 O HOH B 2102 1.98 REMARK 500 O HOH B 2172 O HOH B 2513 1.99 REMARK 500 O HOH B 2330 O HOH B 2686 1.99 REMARK 500 OE1 GLN C 95 O HOH C 301 1.99 REMARK 500 O HOH A 347 O HOH A 445 2.01 REMARK 500 O HOH A 456 O HOH A 473 2.01 REMARK 500 O HOH B 2600 O HOH B 2616 2.02 REMARK 500 O HOH B 2767 O HOH B 2812 2.02 REMARK 500 O HOH B 2555 O HOH B 2631 2.03 REMARK 500 O HOH B 2579 O HOH B 2659 2.05 REMARK 500 OE2 GLU B 954 O HOH B 2103 2.05 REMARK 500 O HOH B 2201 O HOH B 2346 2.06 REMARK 500 O HOH A 400 O HOH A 465 2.06 REMARK 500 O2 GOL B 2007 O HOH B 2104 2.07 REMARK 500 O HOH A 303 O HOH A 409 2.08 REMARK 500 O HOH C 396 O HOH C 456 2.08 REMARK 500 O HOH B 2153 O HOH B 2382 2.08 REMARK 500 OD1 ASP B 620 O HOH B 2105 2.08 REMARK 500 O ASP C 38 O HOH C 302 2.10 REMARK 500 O HOH B 2203 O HOH B 2684 2.10 REMARK 500 O HOH B 2182 O HOH B 2739 2.10 REMARK 500 O HOH B 2631 O HOH B 2738 2.10 REMARK 500 O HOH B 2682 O HOH B 2825 2.11 REMARK 500 O HOH B 2468 O HOH B 2751 2.12 REMARK 500 O HOH B 2211 O HOH B 2743 2.12 REMARK 500 O HOH B 2106 O HOH B 2251 2.14 REMARK 500 O HOH B 2527 O HOH B 2805 2.14 REMARK 500 O HOH B 2485 O HOH C 476 2.14 REMARK 500 O HOH C 308 O HOH C 376 2.15 REMARK 500 OE1 GLN B 860 O HOH B 2106 2.15 REMARK 500 REMARK 500 THIS ENTRY HAS 59 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2683 O HOH C 348 3555 1.86 REMARK 500 O HOH A 410 O HOH B 2374 16555 1.93 REMARK 500 O HOH B 2136 O HOH B 2659 7556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -65.07 -100.75 REMARK 500 LYS A 117 33.80 71.72 REMARK 500 ARG A 149 -7.43 81.99 REMARK 500 HIS B 764 -121.13 -126.15 REMARK 500 HIS B 770 64.65 -105.06 REMARK 500 ASN C 26 93.69 -46.12 REMARK 500 GLU C 37 119.29 -31.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN C 25 ASN C 26 144.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 79.9 REMARK 620 3 GNP A 201 O1G 166.5 86.6 REMARK 620 4 GNP A 201 O1B 95.4 174.7 98.0 REMARK 620 5 HOH A 311 O 87.8 87.6 92.4 94.8 REMARK 620 6 HOH A 324 O 89.0 92.4 90.9 85.0 176.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FVD B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME C 203 DBREF 6D5G A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 6D5G B 566 1046 UNP Q07889 SOS1_HUMAN 566 1046 DBREF 6D5G C 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 6D5G GLY A 0 UNP P01112 EXPRESSION TAG SEQADV 6D5G ALA A 64 UNP P01112 TYR 64 CONFLICT SEQADV 6D5G GLY B 565 UNP Q07889 EXPRESSION TAG SEQADV 6D5G GLY C 0 UNP P01112 EXPRESSION TAG SEQRES 1 A 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CSO SEQRES 5 A 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU ALA SEQRES 6 A 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 A 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 A 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 A 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 482 GLY GLN MET ARG LEU PRO SER ALA ASP VAL TYR ARG PHE SEQRES 2 B 482 ALA GLU PRO ASP SER GLU GLU ASN ILE ILE PHE GLU GLU SEQRES 3 B 482 ASN MET GLN PRO LYS ALA GLY ILE PRO ILE ILE LYS ALA SEQRES 4 B 482 GLY THR VAL ILE LYS LEU ILE GLU ARG LEU THR TYR HIS SEQRES 5 B 482 MET TYR ALA ASP PRO ASN PHE VAL ARG THR PHE LEU THR SEQRES 6 B 482 THR TYR ARG SER PHE CYS LYS PRO GLN GLU LEU LEU SER SEQRES 7 B 482 LEU ILE ILE GLU ARG PHE GLU ILE PRO GLU PRO GLU PRO SEQRES 8 B 482 THR GLU ALA ASP ARG ILE ALA ILE GLU ASN GLY ASP GLN SEQRES 9 B 482 PRO LEU SER ALA GLU LEU LYS ARG PHE ARG LYS GLU TYR SEQRES 10 B 482 ILE GLN PRO VAL GLN LEU ARG VAL LEU ASN VAL CYS ARG SEQRES 11 B 482 HIS TRP VAL GLU HIS HIS PHE TYR ASP PHE GLU ARG ASP SEQRES 12 B 482 ALA TYR LEU LEU GLN ARG MET GLU GLU PHE ILE GLY THR SEQRES 13 B 482 VAL ARG GLY LYS ALA MET LYS LYS TRP VAL GLU SER ILE SEQRES 14 B 482 THR LYS ILE ILE GLN ARG LYS LYS ILE ALA ARG ASP ASN SEQRES 15 B 482 GLY PRO GLY HIS ASN ILE THR PHE GLN SER SER PRO PRO SEQRES 16 B 482 THR VAL GLU TRP HIS ILE SER ARG PRO GLY HIS ILE GLU SEQRES 17 B 482 THR PHE ASP LEU LEU THR LEU HIS PRO ILE GLU ILE ALA SEQRES 18 B 482 ARG GLN LEU THR LEU LEU GLU SER ASP LEU TYR ARG ALA SEQRES 19 B 482 VAL GLN PRO SER GLU LEU VAL GLY SER VAL TRP THR LYS SEQRES 20 B 482 GLU ASP LYS GLU ILE ASN SER PRO ASN LEU LEU LYS MET SEQRES 21 B 482 ILE ARG HIS THR THR ASN LEU THR LEU TRP PHE GLU LYS SEQRES 22 B 482 CYS ILE VAL GLU THR GLU ASN LEU GLU GLU ARG VAL ALA SEQRES 23 B 482 VAL VAL SER ARG ILE ILE GLU ILE LEU GLN VAL PHE GLN SEQRES 24 B 482 GLU LEU ASN ASN PHE ASN GLY VAL LEU GLU VAL VAL SER SEQRES 25 B 482 ALA MET ASN SER SER PRO VAL TYR ARG LEU ASP HIS THR SEQRES 26 B 482 PHE GLU GLN ILE PRO SER ARG GLN LYS LYS ILE LEU GLU SEQRES 27 B 482 GLU ALA HIS GLU LEU SER GLU ASP HIS TYR LYS LYS TYR SEQRES 28 B 482 LEU ALA LYS LEU ARG SER ILE ASN PRO PRO CYS VAL PRO SEQRES 29 B 482 PHE PHE GLY ILE TYR LEU THR ASN ILE LEU LYS THR GLU SEQRES 30 B 482 GLU GLY ASN PRO GLU VAL LEU LYS ARG HIS GLY LYS GLU SEQRES 31 B 482 LEU ILE ASN PHE SER LYS ARG ARG LYS VAL ALA GLU ILE SEQRES 32 B 482 THR GLY GLU ILE GLN GLN TYR GLN ASN GLN PRO TYR CYS SEQRES 33 B 482 LEU ARG VAL GLU SER ASP ILE LYS ARG PHE PHE GLU ASN SEQRES 34 B 482 LEU ASN PRO MET GLY ASN SER MET GLU LYS GLU PHE THR SEQRES 35 B 482 ASP TYR LEU PHE ASN LYS SER LEU GLU ILE GLU PRO ARG SEQRES 36 B 482 ASN PRO LYS PRO LEU PRO ARG PHE PRO LYS LYS TYR SER SEQRES 37 B 482 TYR PRO LEU LYS SER PRO GLY VAL ARG PRO SER ASN PRO SEQRES 38 B 482 ARG SEQRES 1 C 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 C 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 C 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 C 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 C 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 C 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 C 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 C 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 C 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 C 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 C 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 C 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 C 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS MODRES 6D5G CSO A 51 CYS MODIFIED RESIDUE HET CSO A 51 7 HET GNP A 201 32 HET MG A 202 1 HET FMT A 203 3 HET CL A 204 1 HET FVD B2001 32 HET FMT B2002 3 HET FMT B2003 3 HET FMT B2004 3 HET FMT B2005 3 HET FMT B2006 3 HET GOL B2007 6 HET GOL B2008 6 HET GOL B2009 6 HET CL C 201 1 HET CL C 202 1 HET BME C 203 4 HETNAM CSO S-HYDROXYCYSTEINE HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM FMT FORMIC ACID HETNAM CL CHLORIDE ION HETNAM FVD 6-CHLORO-1-[(4-FLUORO-3,5-DIMETHYLPHENYL)METHYL]-2- HETNAM 2 FVD (PIPERAZIN-1-YL)-4-(1,2,3,6-TETRAHYDROPYRIDIN-4-YL)- HETNAM 3 FVD 1H-BENZIMIDAZOLE HETNAM GOL GLYCEROL HETNAM BME BETA-MERCAPTOETHANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 MG MG 2+ FORMUL 6 FMT 6(C H2 O2) FORMUL 7 CL 3(CL 1-) FORMUL 8 FVD C25 H29 CL F N5 FORMUL 14 GOL 3(C3 H8 O3) FORMUL 19 BME C2 H6 O S FORMUL 20 HOH *1099(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 SER A 65 5 5 HELIX 3 AA3 ARG A 68 GLY A 75 1 8 HELIX 4 AA4 ASN A 86 ASP A 105 1 20 HELIX 5 AA5 GLU A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 HIS A 166 1 16 HELIX 7 AA7 TYR B 575 GLU B 579 5 5 HELIX 8 AA8 THR B 605 THR B 614 1 10 HELIX 9 AA9 ASP B 620 TYR B 631 1 12 HELIX 10 AB1 ARG B 632 PHE B 634 5 3 HELIX 11 AB2 LYS B 636 GLU B 649 1 14 HELIX 12 AB3 THR B 656 ASN B 665 1 10 HELIX 13 AB4 SER B 671 TYR B 681 1 11 HELIX 14 AB5 TYR B 681 HIS B 700 1 20 HELIX 15 AB6 PHE B 701 ASP B 707 1 7 HELIX 16 AB7 ASP B 707 THR B 720 1 14 HELIX 17 AB8 GLY B 723 ALA B 725 5 3 HELIX 18 AB9 MET B 726 ILE B 742 1 17 HELIX 19 AC1 HIS B 770 PHE B 774 5 5 HELIX 20 AC2 HIS B 780 ALA B 798 1 19 HELIX 21 AC3 GLN B 800 LYS B 811 5 12 HELIX 22 AC4 ASP B 813 SER B 818 1 6 HELIX 23 AC5 SER B 818 GLU B 841 1 24 HELIX 24 AC6 ASN B 844 LEU B 865 1 22 HELIX 25 AC7 ASN B 867 ASN B 879 1 13 HELIX 26 AC8 SER B 880 ARG B 885 1 6 HELIX 27 AC9 LEU B 886 ILE B 893 1 8 HELIX 28 AD1 PRO B 894 LEU B 907 1 14 HELIX 29 AD2 SER B 908 ARG B 920 1 13 HELIX 30 AD3 PHE B 930 GLY B 943 1 14 HELIX 31 AD4 PHE B 958 GLN B 975 1 18 HELIX 32 AD5 GLU B 984 LEU B 994 1 11 HELIX 33 AD6 MET B 1001 GLU B 1017 1 17 HELIX 34 AD7 SER C 17 GLN C 25 1 9 HELIX 35 AD8 TYR C 64 ALA C 66 5 3 HELIX 36 AD9 MET C 67 ARG C 73 1 7 HELIX 37 AE1 ASN C 86 ASP C 92 1 7 HELIX 38 AE2 ASP C 92 ASP C 105 1 14 HELIX 39 AE3 GLU C 126 GLY C 138 1 13 HELIX 40 AE4 GLY C 151 GLN C 165 1 15 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O ASP A 57 N ASP A 38 SHEET 3 AA1 6 THR A 2 VAL A 9 1 N TYR A 4 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 4 ILE B 586 PHE B 588 0 SHEET 2 AA2 4 ILE B 601 GLY B 604 -1 O ALA B 603 N ILE B 587 SHEET 3 AA2 4 LYS B 953 ASN B 957 -1 O ILE B 956 N GLY B 604 SHEET 4 AA2 4 VAL B 947 ARG B 950 -1 N LEU B 948 O LEU B 955 SHEET 1 AA3 6 ARG C 41 ILE C 46 0 SHEET 2 AA3 6 GLU C 49 ASP C 57 -1 O LEU C 53 N LYS C 42 SHEET 3 AA3 6 THR C 2 GLY C 10 1 N LEU C 6 O LEU C 56 SHEET 4 AA3 6 GLY C 77 ALA C 83 1 O VAL C 81 N VAL C 9 SHEET 5 AA3 6 MET C 111 LYS C 117 1 O ASN C 116 N PHE C 82 SHEET 6 AA3 6 TYR C 141 SER C 145 1 O THR C 144 N LYS C 117 LINK C THR A 50 N CSO A 51 1555 1555 1.33 LINK C CSO A 51 N LEU A 52 1555 1555 1.32 LINK OG SER A 17 MG MG A 202 1555 1555 2.21 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.11 LINK O1G GNP A 201 MG MG A 202 1555 1555 2.10 LINK O1B GNP A 201 MG MG A 202 1555 1555 2.07 LINK MG MG A 202 O HOH A 311 1555 1555 2.25 LINK MG MG A 202 O HOH A 324 1555 1555 2.12 CISPEP 1 PRO B 924 PRO B 925 0 9.33 CISPEP 2 ASN B 1020 PRO B 1021 0 7.11 SITE 1 AC1 30 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 30 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 30 VAL A 29 ASP A 30 GLU A 31 TYR A 32 SITE 4 AC1 30 PRO A 34 THR A 35 GLY A 60 GLN A 61 SITE 5 AC1 30 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 6 AC1 30 SER A 145 ALA A 146 LYS A 147 MG A 202 SITE 7 AC1 30 HOH A 305 HOH A 324 HOH A 359 HOH A 372 SITE 8 AC1 30 HOH A 420 HOH A 428 SITE 1 AC2 5 SER A 17 THR A 35 GNP A 201 HOH A 311 SITE 2 AC2 5 HOH A 324 SITE 1 AC3 2 GLN A 99 ARG A 102 SITE 1 AC4 2 ARG A 41 ASN B 976 SITE 1 AC5 14 VAL B 852 MET B 878 ASN B 879 VAL B 883 SITE 2 AC5 14 TYR B 884 ASP B 887 PHE B 890 ILE B 893 SITE 3 AC5 14 LEU B 901 GLU B 902 HIS B 905 GOL B2009 SITE 4 AC5 14 HOH B2475 HOH B2507 SITE 1 AC6 6 GLN B 566 MET B 567 HIS B 616 MET B 617 SITE 2 AC6 6 HOH B2195 HOH B2286 SITE 1 AC7 3 ARG A 128 ARG B 767 PRO B 768 SITE 1 AC8 7 GLU A 37 MET A 67 GLN A 70 ALA B 619 SITE 2 AC8 7 ARG B 688 HOH B2157 HOH B2281 SITE 1 AC9 6 TYR B 615 HIS B 616 ARG B 647 TYR B 681 SITE 2 AC9 6 VAL B 685 HOH B2272 SITE 1 AD1 1 TYR B1031 SITE 1 AD2 5 ARG B 786 GLU B 864 VAL B1040 HOH B2104 SITE 2 AD2 5 HOH B2221 SITE 1 AD3 6 SER B 793 ASP B 794 PRO B 978 TYR B 979 SITE 2 AD3 6 HOH B2199 HOH B2241 SITE 1 AD4 5 PHE B 890 LYS B 898 GLU B 902 FVD B2001 SITE 2 AD4 5 HOH B2520 SITE 1 AD5 2 VAL C 45 ASP C 47 SITE 1 AD6 6 ASN C 85 ASN C 86 THR C 87 THR C 124 SITE 2 AD6 6 HOH C 457 HOH C 462 SITE 1 AD7 8 THR B 810 LEU B 938 GLY C 12 GLY C 13 SITE 2 AD7 8 LYS C 16 SER C 17 GLY C 60 GLU C 62 CRYST1 183.050 183.050 178.784 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005463 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005593 0.00000