HEADER SIGNALING PROTEIN 19-APR-18 6D5H TITLE RAS:SOS:RAS IN COMPLEX WITH A SMALL MOLECULE ACTIVATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SON OF SEVENLESS HOMOLOG 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: SOS-1; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: GTPASE HRAS; COMPND 14 CHAIN: C; COMPND 15 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SOS1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: HRAS, HRAS1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAS, SOS, INHIBITOR, ONCOPROTEIN, PROTEIN-PROTEIN COMPLEX, MAPK, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.PHAN,T.HODGES,S.W.FESIK REVDAT 4 15-NOV-23 6D5H 1 REMARK REVDAT 3 04-OCT-23 6D5H 1 REMARK REVDAT 2 07-NOV-18 6D5H 1 JRNL REVDAT 1 19-SEP-18 6D5H 0 JRNL AUTH T.R.HODGES,J.R.ABBOTT,A.J.LITTLE,D.SARKAR,J.M.SALOVICH, JRNL AUTH 2 J.E.HOWES,D.T.AKAN,J.SAI,A.L.ARNOLD,C.BROWNING,M.C.BURNS, JRNL AUTH 3 T.SOBOLIK,Q.SUN,Y.BEESETTY,J.A.COKER,D.SCHARN, JRNL AUTH 4 H.STADTMUELLER,O.W.ROSSANESE,J.PHAN,A.G.WATERSON, JRNL AUTH 5 D.B.MCCONNELL,S.W.FESIK JRNL TITL DISCOVERY AND STRUCTURE-BASED OPTIMIZATION OF JRNL TITL 2 BENZIMIDAZOLE-DERIVED ACTIVATORS OF SOS1-MEDIATED NUCLEOTIDE JRNL TITL 3 EXCHANGE ON RAS. JRNL REF J. MED. CHEM. V. 61 8875 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 30205005 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01108 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.BURNS,Q.SUN,R.N.DANIELS,D.CAMPER,J.P.KENNEDY,J.PHAN, REMARK 1 AUTH 2 E.T.OLEJNICZAK,T.LEE,A.G.WATERSON,O.W.ROSSANESE,S.W.FESIK REMARK 1 TITL APPROACH FOR TARGETING RAS WITH SMALL MOLECULES THAT REMARK 1 TITL 2 ACTIVATE SOS-MEDIATED NUCLEOTIDE EXCHANGE. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 111 3401 2014 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 24550516 REMARK 1 DOI 10.1073/PNAS.1315798111 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 140848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 6854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3485 - 5.5874 1.00 4799 209 0.1655 0.1761 REMARK 3 2 5.5874 - 4.4363 1.00 4657 178 0.1345 0.1504 REMARK 3 3 4.4363 - 3.8760 1.00 4593 190 0.1223 0.1410 REMARK 3 4 3.8760 - 3.5218 1.00 4522 222 0.1300 0.1377 REMARK 3 5 3.5218 - 3.2694 1.00 4548 209 0.1462 0.1732 REMARK 3 6 3.2694 - 3.0767 1.00 4449 250 0.1569 0.1766 REMARK 3 7 3.0767 - 2.9227 1.00 4450 251 0.1641 0.1928 REMARK 3 8 2.9227 - 2.7955 1.00 4442 301 0.1688 0.1957 REMARK 3 9 2.7955 - 2.6879 1.00 4447 248 0.1766 0.1892 REMARK 3 10 2.6879 - 2.5951 1.00 4469 224 0.1763 0.1977 REMARK 3 11 2.5951 - 2.5140 1.00 4449 235 0.1717 0.1970 REMARK 3 12 2.5140 - 2.4421 1.00 4500 206 0.1738 0.2082 REMARK 3 13 2.4421 - 2.3779 1.00 4441 244 0.1760 0.2012 REMARK 3 14 2.3779 - 2.3198 1.00 4419 258 0.1776 0.1940 REMARK 3 15 2.3198 - 2.2671 1.00 4442 234 0.1777 0.1940 REMARK 3 16 2.2671 - 2.2189 1.00 4473 198 0.1989 0.2143 REMARK 3 17 2.2189 - 2.1745 1.00 4501 198 0.1747 0.2117 REMARK 3 18 2.1745 - 2.1334 1.00 4380 237 0.1797 0.2051 REMARK 3 19 2.1334 - 2.0953 1.00 4459 269 0.1792 0.2010 REMARK 3 20 2.0953 - 2.0598 1.00 4406 211 0.1980 0.2180 REMARK 3 21 2.0598 - 2.0266 1.00 4450 227 0.1919 0.1865 REMARK 3 22 2.0266 - 1.9954 1.00 4448 213 0.1975 0.2249 REMARK 3 23 1.9954 - 1.9661 1.00 4427 248 0.2082 0.2224 REMARK 3 24 1.9661 - 1.9384 1.00 4403 258 0.2193 0.2665 REMARK 3 25 1.9384 - 1.9122 1.00 4381 265 0.2783 0.2942 REMARK 3 26 1.9122 - 1.8874 1.00 4426 217 0.2496 0.2364 REMARK 3 27 1.8874 - 1.8638 1.00 4459 195 0.2389 0.2671 REMARK 3 28 1.8638 - 1.8413 1.00 4426 238 0.2402 0.2707 REMARK 3 29 1.8413 - 1.8199 1.00 4436 206 0.2509 0.2545 REMARK 3 30 1.8199 - 1.7994 0.97 4292 215 0.2659 0.2956 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7168 REMARK 3 ANGLE : 1.028 9749 REMARK 3 CHIRALITY : 0.040 1053 REMARK 3 PLANARITY : 0.005 1319 REMARK 3 DIHEDRAL : 13.472 2814 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1708 48.4964 60.4317 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.2373 REMARK 3 T33: 0.2400 T12: -0.0311 REMARK 3 T13: 0.0116 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.0750 L22: 0.1737 REMARK 3 L33: 0.2068 L12: 0.0994 REMARK 3 L13: 0.0724 L23: 0.1347 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: 0.0156 S13: 0.0120 REMARK 3 S21: -0.0318 S22: 0.0298 S23: 0.0447 REMARK 3 S31: 0.0152 S32: -0.0024 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0581 46.0659 73.4880 REMARK 3 T TENSOR REMARK 3 T11: 0.3339 T22: 0.3005 REMARK 3 T33: 0.2732 T12: -0.0370 REMARK 3 T13: 0.0083 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.0532 L22: 0.0322 REMARK 3 L33: 0.0400 L12: 0.0198 REMARK 3 L13: 0.0345 L23: -0.0097 REMARK 3 S TENSOR REMARK 3 S11: -0.0556 S12: -0.0848 S13: -0.1292 REMARK 3 S21: 0.1926 S22: -0.0074 S23: 0.0602 REMARK 3 S31: 0.2490 S32: -0.0530 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3334 57.0760 74.9951 REMARK 3 T TENSOR REMARK 3 T11: 0.2561 T22: 0.2697 REMARK 3 T33: 0.2270 T12: -0.0442 REMARK 3 T13: 0.0144 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 0.0567 L22: 0.0966 REMARK 3 L33: 0.0392 L12: 0.0731 REMARK 3 L13: -0.0233 L23: -0.0064 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: -0.2501 S13: 0.0979 REMARK 3 S21: 0.1167 S22: -0.0142 S23: 0.0273 REMARK 3 S31: -0.0360 S32: 0.0092 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0975 61.9888 64.1030 REMARK 3 T TENSOR REMARK 3 T11: 0.2548 T22: 0.2242 REMARK 3 T33: 0.2490 T12: -0.0327 REMARK 3 T13: 0.0208 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.1541 L22: 0.1533 REMARK 3 L33: 0.1243 L12: 0.1571 REMARK 3 L13: -0.0890 L23: -0.1021 REMARK 3 S TENSOR REMARK 3 S11: 0.0713 S12: 0.0067 S13: 0.1052 REMARK 3 S21: -0.0711 S22: -0.0296 S23: 0.0442 REMARK 3 S31: -0.1539 S32: 0.1011 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 565 THROUGH 707 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5708 30.6859 78.8748 REMARK 3 T TENSOR REMARK 3 T11: 0.2331 T22: 0.2289 REMARK 3 T33: 0.2117 T12: -0.0175 REMARK 3 T13: -0.0003 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.2405 L22: 0.1603 REMARK 3 L33: 0.3385 L12: -0.1389 REMARK 3 L13: -0.2718 L23: 0.1001 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: -0.0138 S13: 0.0161 REMARK 3 S21: 0.0203 S22: 0.0302 S23: 0.0081 REMARK 3 S31: 0.0166 S32: 0.0795 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 708 THROUGH 759 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2601 43.0649 65.4679 REMARK 3 T TENSOR REMARK 3 T11: 0.2437 T22: 0.2983 REMARK 3 T33: 0.2935 T12: -0.0129 REMARK 3 T13: 0.0014 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.0443 L22: 0.2266 REMARK 3 L33: 0.1788 L12: 0.0305 REMARK 3 L13: -0.0332 L23: 0.1854 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: -0.0061 S13: 0.0929 REMARK 3 S21: 0.0347 S22: 0.0289 S23: 0.1877 REMARK 3 S31: -0.1336 S32: -0.1150 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 760 THROUGH 1046 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2669 34.2133 32.7078 REMARK 3 T TENSOR REMARK 3 T11: 0.1765 T22: 0.1795 REMARK 3 T33: 0.1889 T12: -0.0234 REMARK 3 T13: 0.0074 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.1744 L22: 0.2761 REMARK 3 L33: 0.6612 L12: 0.0528 REMARK 3 L13: -0.1140 L23: -0.1458 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: 0.0196 S13: -0.0071 REMARK 3 S21: -0.0181 S22: 0.0226 S23: -0.0111 REMARK 3 S31: 0.0136 S32: 0.0112 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7425 12.2294 41.7713 REMARK 3 T TENSOR REMARK 3 T11: 0.2453 T22: 0.2362 REMARK 3 T33: 0.3217 T12: 0.0133 REMARK 3 T13: 0.0046 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.0054 L22: 0.1095 REMARK 3 L33: 0.0453 L12: -0.0209 REMARK 3 L13: 0.0179 L23: -0.0652 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: -0.0243 S13: 0.1442 REMARK 3 S21: 0.1058 S22: 0.0052 S23: -0.1808 REMARK 3 S31: 0.0147 S32: 0.0018 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2384 12.6007 55.9998 REMARK 3 T TENSOR REMARK 3 T11: 0.5776 T22: 0.3566 REMARK 3 T33: 0.6790 T12: 0.0177 REMARK 3 T13: -0.1308 T23: 0.0794 REMARK 3 L TENSOR REMARK 3 L11: 0.0053 L22: 0.0382 REMARK 3 L33: 0.0138 L12: -0.0076 REMARK 3 L13: -0.0015 L23: -0.0160 REMARK 3 S TENSOR REMARK 3 S11: 0.0841 S12: 0.0825 S13: -0.1245 REMARK 3 S21: 0.0997 S22: 0.0821 S23: 0.0442 REMARK 3 S31: 0.2653 S32: 0.0282 S33: 0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 35 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9790 14.2481 46.1702 REMARK 3 T TENSOR REMARK 3 T11: 0.3848 T22: 0.3988 REMARK 3 T33: 0.5861 T12: 0.0580 REMARK 3 T13: -0.1164 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.0164 L22: 0.0099 REMARK 3 L33: 0.0228 L12: 0.0154 REMARK 3 L13: -0.0225 L23: -0.0115 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: -0.0849 S13: 0.0706 REMARK 3 S21: 0.0114 S22: -0.1131 S23: -0.0774 REMARK 3 S31: -0.1350 S32: 0.0931 S33: -0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5058 18.9275 36.3695 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.1992 REMARK 3 T33: 0.2928 T12: 0.0012 REMARK 3 T13: 0.0129 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.0364 L22: 0.1187 REMARK 3 L33: 0.0853 L12: 0.0330 REMARK 3 L13: 0.0595 L23: 0.0715 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: -0.0115 S13: -0.0336 REMARK 3 S21: -0.0213 S22: -0.0548 S23: -0.2033 REMARK 3 S31: 0.0185 S32: 0.0115 S33: -0.0009 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 75 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2534 8.8032 31.8243 REMARK 3 T TENSOR REMARK 3 T11: 0.2470 T22: 0.2136 REMARK 3 T33: 0.2360 T12: 0.0293 REMARK 3 T13: 0.0166 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.0353 L22: 0.2220 REMARK 3 L33: 0.0574 L12: -0.0078 REMARK 3 L13: -0.0402 L23: 0.0196 REMARK 3 S TENSOR REMARK 3 S11: 0.0992 S12: 0.1171 S13: 0.0103 REMARK 3 S21: -0.1276 S22: -0.0343 S23: 0.0452 REMARK 3 S31: -0.0202 S32: -0.0011 S33: -0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 118 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0466 -1.8478 36.5854 REMARK 3 T TENSOR REMARK 3 T11: 0.2620 T22: 0.2256 REMARK 3 T33: 0.3048 T12: 0.0055 REMARK 3 T13: 0.0124 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.0357 L22: 0.0436 REMARK 3 L33: 0.0392 L12: -0.0017 REMARK 3 L13: 0.0290 L23: -0.0189 REMARK 3 S TENSOR REMARK 3 S11: 0.1147 S12: -0.0265 S13: -0.0264 REMARK 3 S21: -0.1165 S22: -0.0555 S23: 0.2385 REMARK 3 S31: 0.1427 S32: 0.0148 S33: 0.0014 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 138 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2311 2.3396 39.9971 REMARK 3 T TENSOR REMARK 3 T11: 0.2284 T22: 0.2151 REMARK 3 T33: 0.2789 T12: 0.0295 REMARK 3 T13: 0.0092 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0648 L22: 0.1335 REMARK 3 L33: 0.0230 L12: -0.0654 REMARK 3 L13: 0.0385 L23: -0.0395 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: -0.0344 S13: -0.0141 REMARK 3 S21: -0.0342 S22: -0.0484 S23: -0.1458 REMARK 3 S31: 0.1125 S32: 0.0302 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000234027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 140871 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NYI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 2.0 M SODIUM REMARK 280 FORMATE, PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 92.07100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 92.07100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.61900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 92.07100 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 92.07100 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 89.61900 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 92.07100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 92.07100 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 89.61900 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 92.07100 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 92.07100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 89.61900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 92.07100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 92.07100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 89.61900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 92.07100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 92.07100 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 89.61900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 92.07100 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 92.07100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 89.61900 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 92.07100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 92.07100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.61900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 499 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2783 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2832 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN B 591 REMARK 465 MET B 592 REMARK 465 GLN B 593 REMARK 465 PRO B 594 REMARK 465 LYS B 595 REMARK 465 ALA B 596 REMARK 465 ARG B 744 REMARK 465 ASP B 745 REMARK 465 ASN B 746 REMARK 465 GLY B 747 REMARK 465 PRO B 748 REMARK 465 GLY B 749 REMARK 465 HIS B 750 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2756 O HOH B 2771 1.84 REMARK 500 O HOH A 438 O HOH B 2631 1.86 REMARK 500 O HOH B 2146 O HOH B 2480 1.87 REMARK 500 OD1 ASP B 620 O HOH B 2101 1.87 REMARK 500 O HOH B 2680 O HOH B 2714 1.87 REMARK 500 O HOH B 2491 O HOH B 2758 1.89 REMARK 500 O HOH A 367 O HOH A 464 1.89 REMARK 500 O HOH B 2328 O HOH B 2626 1.90 REMARK 500 O HOH B 2195 O HOH B 2395 1.91 REMARK 500 O HOH B 2169 O HOH B 2284 1.91 REMARK 500 O HOH C 406 O HOH C 432 1.91 REMARK 500 O HOH B 2129 O HOH B 2598 1.97 REMARK 500 O HOH B 2502 O HOH B 2786 1.98 REMARK 500 O HOH B 2606 O HOH B 2652 1.98 REMARK 500 O HOH B 2411 O HOH C 429 2.02 REMARK 500 O HOH B 2583 O HOH B 2666 2.02 REMARK 500 O HOH B 2406 O HOH B 2641 2.03 REMARK 500 O HOH C 477 O HOH C 486 2.04 REMARK 500 O HOH A 346 O HOH A 388 2.05 REMARK 500 O HOH B 2514 O HOH B 2618 2.06 REMARK 500 O HOH C 473 O HOH C 489 2.06 REMARK 500 NZ LYS C 117 O HOH C 301 2.06 REMARK 500 O HOH B 2111 O HOH B 2295 2.06 REMARK 500 O HOH B 2558 O HOH B 2628 2.06 REMARK 500 O HOH A 301 O HOH A 409 2.07 REMARK 500 O HOH A 441 O HOH A 501 2.07 REMARK 500 O HOH B 2425 O HOH B 2698 2.07 REMARK 500 OXT ARG B 1046 O HOH B 2102 2.08 REMARK 500 O HOH C 384 O HOH C 479 2.08 REMARK 500 OE2 GLU A 62 O HOH A 301 2.10 REMARK 500 OE2 GLU B 772 O HOH B 2103 2.11 REMARK 500 O HOH A 385 O HOH A 482 2.11 REMARK 500 O HOH B 2662 O HOH C 359 2.12 REMARK 500 O HOH B 2329 O HOH B 2682 2.12 REMARK 500 O HOH B 2196 O HOH B 2423 2.13 REMARK 500 O HOH B 2743 O HOH B 2815 2.13 REMARK 500 OE2 GLU B 954 O HOH B 2104 2.14 REMARK 500 O HOH C 414 O HOH C 482 2.14 REMARK 500 O HOH B 2824 O HOH B 2829 2.14 REMARK 500 O HOH C 437 O HOH C 479 2.14 REMARK 500 O HOH A 433 O HOH A 470 2.15 REMARK 500 O HOH C 484 O HOH C 486 2.15 REMARK 500 O HOH A 440 O HOH A 485 2.16 REMARK 500 O HOH A 304 O HOH A 491 2.19 REMARK 500 O2 GOL B 2007 O HOH B 2105 2.19 REMARK 500 ND1 HIS B 905 O HOH B 2106 2.19 REMARK 500 O HOH B 2690 O HOH B 2796 2.19 REMARK 500 O HOH B 2612 O HOH B 2617 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2675 O HOH B 2700 7555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -63.51 -99.97 REMARK 500 LYS A 117 35.78 70.15 REMARK 500 ARG A 149 -5.10 84.46 REMARK 500 TYR B 681 -62.44 -120.68 REMARK 500 HIS B 764 -118.16 -123.00 REMARK 500 HIS B 770 62.52 -104.33 REMARK 500 ASN C 26 101.07 -49.48 REMARK 500 TYR C 40 18.29 -141.09 REMARK 500 TYR C 40 18.29 -142.40 REMARK 500 ASP C 119 -162.64 -163.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN C 25 ASN C 26 149.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 82.0 REMARK 620 3 GNP A 201 O1G 172.3 90.4 REMARK 620 4 GNP A 201 O1B 94.6 176.1 93.0 REMARK 620 5 HOH A 319 O 85.8 88.2 93.1 93.4 REMARK 620 6 HOH A 334 O 86.8 90.6 94.2 87.4 172.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FV7 B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 202 DBREF 6D5H A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 6D5H B 566 1046 UNP Q07889 SOS1_HUMAN 566 1046 DBREF 6D5H C 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 6D5H GLY A 0 UNP P01112 EXPRESSION TAG SEQADV 6D5H ALA A 64 UNP P01112 TYR 64 CONFLICT SEQADV 6D5H GLY B 565 UNP Q07889 EXPRESSION TAG SEQADV 6D5H GLY C 0 UNP P01112 EXPRESSION TAG SEQRES 1 A 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CSO SEQRES 5 A 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU ALA SEQRES 6 A 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 A 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 A 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 A 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 482 GLY GLN MET ARG LEU PRO SER ALA ASP VAL TYR ARG PHE SEQRES 2 B 482 ALA GLU PRO ASP SER GLU GLU ASN ILE ILE PHE GLU GLU SEQRES 3 B 482 ASN MET GLN PRO LYS ALA GLY ILE PRO ILE ILE LYS ALA SEQRES 4 B 482 GLY THR VAL ILE LYS LEU ILE GLU ARG LEU THR TYR HIS SEQRES 5 B 482 MET TYR ALA ASP PRO ASN PHE VAL ARG THR PHE LEU THR SEQRES 6 B 482 THR TYR ARG SER PHE CYS LYS PRO GLN GLU LEU LEU SER SEQRES 7 B 482 LEU ILE ILE GLU ARG PHE GLU ILE PRO GLU PRO GLU PRO SEQRES 8 B 482 THR GLU ALA ASP ARG ILE ALA ILE GLU ASN GLY ASP GLN SEQRES 9 B 482 PRO LEU SER ALA GLU LEU LYS ARG PHE ARG LYS GLU TYR SEQRES 10 B 482 ILE GLN PRO VAL GLN LEU ARG VAL LEU ASN VAL CYS ARG SEQRES 11 B 482 HIS TRP VAL GLU HIS HIS PHE TYR ASP PHE GLU ARG ASP SEQRES 12 B 482 ALA TYR LEU LEU GLN ARG MET GLU GLU PHE ILE GLY THR SEQRES 13 B 482 VAL ARG GLY LYS ALA MET LYS LYS TRP VAL GLU SER ILE SEQRES 14 B 482 THR LYS ILE ILE GLN ARG LYS LYS ILE ALA ARG ASP ASN SEQRES 15 B 482 GLY PRO GLY HIS ASN ILE THR PHE GLN SER SER PRO PRO SEQRES 16 B 482 THR VAL GLU TRP HIS ILE SER ARG PRO GLY HIS ILE GLU SEQRES 17 B 482 THR PHE ASP LEU LEU THR LEU HIS PRO ILE GLU ILE ALA SEQRES 18 B 482 ARG GLN LEU THR LEU LEU GLU SER ASP LEU TYR ARG ALA SEQRES 19 B 482 VAL GLN PRO SER GLU LEU VAL GLY SER VAL TRP THR LYS SEQRES 20 B 482 GLU ASP LYS GLU ILE ASN SER PRO ASN LEU LEU LYS MET SEQRES 21 B 482 ILE ARG HIS THR THR ASN LEU THR LEU TRP PHE GLU LYS SEQRES 22 B 482 CYS ILE VAL GLU THR GLU ASN LEU GLU GLU ARG VAL ALA SEQRES 23 B 482 VAL VAL SER ARG ILE ILE GLU ILE LEU GLN VAL PHE GLN SEQRES 24 B 482 GLU LEU ASN ASN PHE ASN GLY VAL LEU GLU VAL VAL SER SEQRES 25 B 482 ALA MET ASN SER SER PRO VAL TYR ARG LEU ASP HIS THR SEQRES 26 B 482 PHE GLU GLN ILE PRO SER ARG GLN LYS LYS ILE LEU GLU SEQRES 27 B 482 GLU ALA HIS GLU LEU SER GLU ASP HIS TYR LYS LYS TYR SEQRES 28 B 482 LEU ALA LYS LEU ARG SER ILE ASN PRO PRO CYS VAL PRO SEQRES 29 B 482 PHE PHE GLY ILE TYR LEU THR ASN ILE LEU LYS THR GLU SEQRES 30 B 482 GLU GLY ASN PRO GLU VAL LEU LYS ARG HIS GLY LYS GLU SEQRES 31 B 482 LEU ILE ASN PHE SER LYS ARG ARG LYS VAL ALA GLU ILE SEQRES 32 B 482 THR GLY GLU ILE GLN GLN TYR GLN ASN GLN PRO TYR CYS SEQRES 33 B 482 LEU ARG VAL GLU SER ASP ILE LYS ARG PHE PHE GLU ASN SEQRES 34 B 482 LEU ASN PRO MET GLY ASN SER MET GLU LYS GLU PHE THR SEQRES 35 B 482 ASP TYR LEU PHE ASN LYS SER LEU GLU ILE GLU PRO ARG SEQRES 36 B 482 ASN PRO LYS PRO LEU PRO ARG PHE PRO LYS LYS TYR SER SEQRES 37 B 482 TYR PRO LEU LYS SER PRO GLY VAL ARG PRO SER ASN PRO SEQRES 38 B 482 ARG SEQRES 1 C 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 C 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 C 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 C 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 C 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 C 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 C 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 C 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 C 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 C 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 C 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 C 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 C 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS MODRES 6D5H CSO A 51 CYS MODIFIED RESIDUE HET CSO A 51 7 HET GNP A 201 32 HET MG A 202 1 HET CL A 203 1 HET FV7 B2001 33 HET FMT B2002 3 HET FMT B2003 3 HET FMT B2004 3 HET FMT B2005 3 HET FMT B2006 3 HET GOL B2007 6 HET GOL B2008 6 HET CL C 201 1 HET CL C 202 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM FV7 6-CHLORO-4-(2-CHLOROPHENYL)-1-[(4-FLUORO-3,5- HETNAM 2 FV7 DIMETHYLPHENYL)METHYL]-2-(PIPERAZIN-1-YL)-1H- HETNAM 3 FV7 BENZIMIDAZOLE HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 MG MG 2+ FORMUL 6 CL 3(CL 1-) FORMUL 7 FV7 C26 H25 CL2 F N4 FORMUL 8 FMT 5(C H2 O2) FORMUL 13 GOL 2(C3 H8 O3) FORMUL 17 HOH *1155(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 SER A 65 5 5 HELIX 3 AA3 ARG A 68 GLY A 75 1 8 HELIX 4 AA4 ASN A 86 ASP A 105 1 20 HELIX 5 AA5 GLU A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 GLN A 165 1 15 HELIX 7 AA7 TYR B 575 GLU B 579 5 5 HELIX 8 AA8 THR B 605 THR B 614 1 10 HELIX 9 AA9 ASP B 620 TYR B 631 1 12 HELIX 10 AB1 ARG B 632 PHE B 634 5 3 HELIX 11 AB2 LYS B 636 GLU B 649 1 14 HELIX 12 AB3 THR B 656 ASN B 665 1 10 HELIX 13 AB4 SER B 671 TYR B 681 1 11 HELIX 14 AB5 TYR B 681 HIS B 700 1 20 HELIX 15 AB6 PHE B 701 ASP B 707 1 7 HELIX 16 AB7 ASP B 707 THR B 720 1 14 HELIX 17 AB8 MET B 726 ILE B 742 1 17 HELIX 18 AB9 HIS B 770 PHE B 774 5 5 HELIX 19 AC1 HIS B 780 ALA B 798 1 19 HELIX 20 AC2 GLN B 800 LYS B 811 5 12 HELIX 21 AC3 ASP B 813 SER B 818 1 6 HELIX 22 AC4 SER B 818 GLU B 841 1 24 HELIX 23 AC5 ASN B 844 LEU B 865 1 22 HELIX 24 AC6 ASN B 867 ASN B 879 1 13 HELIX 25 AC7 SER B 880 ARG B 885 1 6 HELIX 26 AC8 LEU B 886 ILE B 893 1 8 HELIX 27 AC9 PRO B 894 LEU B 907 1 14 HELIX 28 AD1 SER B 908 ARG B 920 1 13 HELIX 29 AD2 PHE B 930 GLY B 943 1 14 HELIX 30 AD3 PHE B 958 GLN B 975 1 18 HELIX 31 AD4 GLU B 984 ASN B 993 1 10 HELIX 32 AD5 MET B 1001 GLU B 1017 1 17 HELIX 33 AD6 SER C 17 GLN C 25 1 9 HELIX 34 AD7 TYR C 64 ALA C 66 5 3 HELIX 35 AD8 MET C 67 THR C 74 1 8 HELIX 36 AD9 ASN C 86 ASP C 92 1 7 HELIX 37 AE1 ASP C 92 ASP C 105 1 14 HELIX 38 AE2 GLU C 126 GLY C 138 1 13 HELIX 39 AE3 GLY C 151 GLN C 165 1 15 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O ASP A 57 N ASP A 38 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N TYR A 4 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 4 ILE B 586 PHE B 588 0 SHEET 2 AA2 4 ILE B 601 GLY B 604 -1 O ALA B 603 N ILE B 587 SHEET 3 AA2 4 LYS B 953 ASN B 957 -1 O ILE B 956 N GLY B 604 SHEET 4 AA2 4 VAL B 947 ARG B 950 -1 N LEU B 948 O LEU B 955 SHEET 1 AA3 6 ARG C 41 ILE C 46 0 SHEET 2 AA3 6 GLU C 49 ASP C 57 -1 O LEU C 53 N LYS C 42 SHEET 3 AA3 6 THR C 2 GLY C 10 1 N TYR C 4 O ASP C 54 SHEET 4 AA3 6 GLY C 77 ALA C 83 1 O VAL C 81 N VAL C 9 SHEET 5 AA3 6 MET C 111 LYS C 117 1 O ASN C 116 N PHE C 82 SHEET 6 AA3 6 TYR C 141 SER C 145 1 O THR C 144 N LYS C 117 LINK C THR A 50 N CSO A 51 1555 1555 1.32 LINK C CSO A 51 N LEU A 52 1555 1555 1.32 LINK OG SER A 17 MG MG A 202 1555 1555 2.17 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.06 LINK O1G GNP A 201 MG MG A 202 1555 1555 2.07 LINK O1B GNP A 201 MG MG A 202 1555 1555 2.06 LINK MG MG A 202 O HOH A 319 1555 1555 2.24 LINK MG MG A 202 O HOH A 334 1555 1555 2.22 CISPEP 1 PRO B 924 PRO B 925 0 10.14 CISPEP 2 ASN B 1020 PRO B 1021 0 6.62 SITE 1 AC1 28 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 28 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 28 VAL A 29 ASP A 30 GLU A 31 PRO A 34 SITE 4 AC1 28 THR A 35 GLY A 60 GLN A 61 ASN A 116 SITE 5 AC1 28 LYS A 117 ASP A 119 LEU A 120 SER A 145 SITE 6 AC1 28 ALA A 146 LYS A 147 MG A 202 HOH A 334 SITE 7 AC1 28 HOH A 365 HOH A 374 HOH A 382 HOH A 403 SITE 1 AC2 5 SER A 17 THR A 35 GNP A 201 HOH A 319 SITE 2 AC2 5 HOH A 334 SITE 1 AC3 2 ARG A 41 ASN B 976 SITE 1 AC4 12 VAL B 852 MET B 878 ASN B 879 VAL B 883 SITE 2 AC4 12 TYR B 884 ASP B 887 PHE B 890 ILE B 893 SITE 3 AC4 12 LEU B 901 GLU B 902 HOH B2386 HOH B2456 SITE 1 AC5 5 GLN B 566 MET B 567 HIS B 616 MET B 617 SITE 2 AC5 5 HOH B2266 SITE 1 AC6 3 ARG A 128 ARG B 767 PRO B 768 SITE 1 AC7 7 GLU A 37 MET A 67 GLN A 70 ALA B 619 SITE 2 AC7 7 ARG B 688 HOH B2144 HOH B2335 SITE 1 AC8 5 TYR B 615 HIS B 616 ARG B 647 TYR B 681 SITE 2 AC8 5 HOH B2214 SITE 1 AC9 1 TYR B1031 SITE 1 AD1 5 ARG B 786 GLU B 864 VAL B1040 HOH B2105 SITE 2 AD1 5 HOH B2241 SITE 1 AD2 5 SER B 793 ASP B 794 PRO B 978 TYR B 979 SITE 2 AD2 5 HOH B2399 SITE 1 AD3 6 ASN C 85 ASN C 86 THR C 87 THR C 124 SITE 2 AD3 6 HOH C 468 HOH C 469 SITE 1 AD4 1 ASP C 47 CRYST1 184.142 184.142 179.238 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005431 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005431 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005579 0.00000