HEADER LYASE 19-APR-18 6D5I OBSLTE 11-DEC-19 6D5I 6V2L TITLE CRYSTAL STRUCTURE OF E. COLI PHOSPHOENOLPYRUVATE CARBOXYKINASE TITLE 2 SER250ALA MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPCK; COMPND 5 EC: 4.1.1.49; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PCKA, EC55989_3809; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.SOKARIBO,J.H.COTELESAGE,H.GOLDIE REVDAT 2 11-DEC-19 6D5I 1 OBSLTE REVDAT 1 02-MAY-18 6D5I 0 JRNL AUTH A.S.SOKARIBO,J.H.COTELESAGE,H.GOLDIE,D.SANDERS JRNL TITL CRYSTAL STRUCTURE OF E. COLI PHOSPHOENOLPYRUVATE JRNL TITL 2 CARBOXYKINASE SER250ALA MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2398: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 48181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.4000 - 4.3364 0.93 3211 139 0.1485 0.1813 REMARK 3 2 4.3364 - 3.4426 0.96 3277 142 0.1416 0.1864 REMARK 3 3 3.4426 - 3.0076 0.97 3254 142 0.1620 0.1846 REMARK 3 4 3.0076 - 2.7327 0.98 3317 143 0.1688 0.2060 REMARK 3 5 2.7327 - 2.5369 0.98 3301 142 0.1699 0.2023 REMARK 3 6 2.5369 - 2.3873 0.98 3328 145 0.1752 0.2118 REMARK 3 7 2.3873 - 2.2678 0.98 3327 144 0.1774 0.2400 REMARK 3 8 2.2678 - 2.1691 0.98 3295 143 0.1784 0.2173 REMARK 3 9 2.1691 - 2.0856 0.98 3304 142 0.1796 0.2213 REMARK 3 10 2.0856 - 2.0136 0.98 3284 143 0.1846 0.2675 REMARK 3 11 2.0136 - 1.9507 0.99 3330 144 0.1851 0.2186 REMARK 3 12 1.9507 - 1.8949 0.98 3323 144 0.1931 0.2497 REMARK 3 13 1.8949 - 1.8450 0.98 3291 142 0.2126 0.2333 REMARK 3 14 1.8450 - 1.8000 0.98 3339 145 0.2293 0.3012 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4271 REMARK 3 ANGLE : 0.883 5804 REMARK 3 CHIRALITY : 0.055 636 REMARK 3 PLANARITY : 0.005 752 REMARK 3 DIHEDRAL : 11.754 2520 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D5I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000234024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48267 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.19500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1AYL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: A 2UL DROP WITH 3 MG/ML S250A PCK, 5 REMARK 280 MM MANGANESE CHLORIDE, 5MM MAGNESIUM CHLORIDE, 2 MM ATP, 2MM REMARK 280 PYRUVATE, 1 MM EDTA, 200 MM AMMONIUM ACETATE, 100 MM SODIUM REMARK 280 ACETATE PH 4.8, 0.01 MM DTT, 12% PEG 4000 WAS ADDED TO 2 UL DROP REMARK 280 CONTAINING 0.01 MM NICKEL CHLORIDE, 0.1 M TRIS PH 8.5, 20% PEG REMARK 280 2000. AFTER A WEEK A ROD LIKE CRYSTAL WAS REMOVED AND SOAKED IN REMARK 280 A SOLUTION WITH 30% GLYCEROL 1MM EDTA, 100 MM SODIUM ACETATE REMARK 280 200MM AMMONIUM ACETATE AND 12% PEG 4000 FOR 10 SECONDS AND FLASH REMARK 280 COOLED IN LIQUID NOTROGEN, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.42250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.20850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.42250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.20850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 764 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 901 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 949 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1111 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1145 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1164 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 10 CB CG CD OE1 NE2 REMARK 480 GLU A 158 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 54.60 39.58 REMARK 500 ASP A 269 -32.06 -153.18 REMARK 500 ASP A 274 -163.06 -112.76 REMARK 500 ASP A 307 -17.51 91.50 REMARK 500 ASN A 331 41.77 -91.46 REMARK 500 GLU A 400 67.66 -105.92 REMARK 500 MET A 477 -64.33 76.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1195 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A1196 DISTANCE = 6.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 604 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 213 NZ REMARK 620 2 HIS A 232 NE2 89.0 REMARK 620 3 ASP A 269 OD1 95.5 89.7 REMARK 620 4 ATP A 601 O2G 176.5 91.7 87.9 REMARK 620 5 HOH A 728 O 90.2 174.6 85.1 89.4 REMARK 620 6 HOH A 887 O 95.7 96.8 167.1 80.8 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 603 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 255 OG1 REMARK 620 2 ATP A 601 O3G 172.9 REMARK 620 3 ATP A 601 O2B 86.9 94.7 REMARK 620 4 HOH A 790 O 89.2 89.4 175.2 REMARK 620 5 HOH A 793 O 92.7 94.2 88.3 89.0 REMARK 620 6 HOH A 744 O 85.8 87.3 92.2 90.4 178.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PYR A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 604 DBREF 6D5I A 10 540 UNP B7L4T1 PCKA_ECO55 10 540 SEQADV 6D5I ALA A 250 UNP B7L4T1 SER 250 ENGINEERED MUTATION SEQRES 1 A 531 GLN GLU LEU GLU ALA TYR GLY ILE SER ASP VAL HIS ASP SEQRES 2 A 531 ILE VAL TYR ASN PRO SER TYR ASP LEU LEU TYR GLN GLU SEQRES 3 A 531 GLU LEU ASP PRO SER LEU THR GLY TYR GLU ARG GLY VAL SEQRES 4 A 531 LEU THR ASN LEU GLY ALA VAL ALA VAL ASP THR GLY ILE SEQRES 5 A 531 PHE THR GLY ARG SER PRO LYS ASP LYS TYR ILE VAL ARG SEQRES 6 A 531 ASP ASP THR THR ARG ASP THR PHE TRP TRP ALA ASP LYS SEQRES 7 A 531 GLY LYS GLY LYS ASN ASP ASN LYS PRO LEU SER PRO GLU SEQRES 8 A 531 THR TRP GLN HIS LEU LYS GLY LEU VAL THR ARG GLN LEU SEQRES 9 A 531 SER GLY LYS ARG LEU PHE VAL VAL ASP ALA PHE CYS GLY SEQRES 10 A 531 ALA ASN PRO ASP THR ARG LEU SER VAL ARG PHE ILE THR SEQRES 11 A 531 GLU VAL ALA TRP GLN ALA HIS PHE VAL LYS ASN MET PHE SEQRES 12 A 531 ILE ARG PRO SER ASP GLU GLU LEU ALA GLY PHE LYS PRO SEQRES 13 A 531 ASP PHE ILE VAL MET ASN GLY ALA LYS CYS THR ASN PRO SEQRES 14 A 531 GLN TRP LYS GLU GLN GLY LEU ASN SER GLU ASN PHE VAL SEQRES 15 A 531 ALA PHE ASN LEU THR GLU ARG MET GLN LEU ILE GLY GLY SEQRES 16 A 531 THR TRP TYR GLY GLY GLU MET LYS LYS GLY MET PHE SER SEQRES 17 A 531 MET MET ASN TYR LEU LEU PRO LEU LYS GLY ILE ALA SER SEQRES 18 A 531 MET HIS CYS SER ALA ASN VAL GLY GLU LYS GLY ASP VAL SEQRES 19 A 531 ALA VAL PHE PHE GLY LEU ALA GLY THR GLY LYS THR THR SEQRES 20 A 531 LEU SER THR ASP PRO LYS ARG ARG LEU ILE GLY ASP ASP SEQRES 21 A 531 GLU HIS GLY TRP ASP ASP ASP GLY VAL PHE ASN PHE GLU SEQRES 22 A 531 GLY GLY CYS TYR ALA LYS THR ILE LYS LEU SER LYS GLU SEQRES 23 A 531 ALA GLU PRO GLU ILE TYR ASN ALA ILE ARG ARG ASP ALA SEQRES 24 A 531 LEU LEU GLU ASN VAL THR VAL ARG GLU ASP GLY THR ILE SEQRES 25 A 531 ASP PHE ASP ASP GLY SER LYS THR GLU ASN THR ARG VAL SEQRES 26 A 531 SER TYR PRO ILE TYR HIS ILE ASP ASN ILE VAL LYS PRO SEQRES 27 A 531 VAL SER LYS ALA GLY HIS ALA THR LYS VAL ILE PHE LEU SEQRES 28 A 531 THR ALA ASP ALA PHE GLY VAL LEU PRO PRO VAL SER ARG SEQRES 29 A 531 LEU THR ALA ASP GLN THR GLN TYR HIS PHE LEU SER GLY SEQRES 30 A 531 PHE THR ALA LYS LEU ALA GLY THR GLU ARG GLY ILE THR SEQRES 31 A 531 GLU PRO THR PRO THR PHE SER ALA CYS PHE GLY ALA ALA SEQRES 32 A 531 PHE LEU SER LEU HIS PRO THR GLN TYR ALA GLU VAL LEU SEQRES 33 A 531 VAL LYS ARG MET GLN ALA ALA GLY ALA GLN ALA TYR LEU SEQRES 34 A 531 VAL ASN THR GLY TRP ASN GLY THR GLY LYS ARG ILE SER SEQRES 35 A 531 ILE LYS ASP THR ARG ALA ILE ILE ASP ALA ILE LEU ASN SEQRES 36 A 531 GLY SER LEU ASP ASN ALA GLU THR PHE THR LEU PRO MET SEQRES 37 A 531 PHE ASN LEU ALA ILE PRO THR GLU LEU PRO GLY VAL ASP SEQRES 38 A 531 THR LYS ILE LEU ASP PRO ARG ASN THR TYR ALA SER PRO SEQRES 39 A 531 GLU GLN TRP GLN GLU LYS ALA GLU THR LEU ALA LYS LEU SEQRES 40 A 531 PHE ILE ASP ASN PHE ASP LYS TYR THR ASP THR PRO ALA SEQRES 41 A 531 GLY ALA ALA LEU VAL ALA ALA GLY PRO LYS LEU HET ATP A 601 31 HET PYR A 602 6 HET MN A 603 1 HET MN A 604 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM PYR PYRUVIC ACID HETNAM MN MANGANESE (II) ION FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 PYR C3 H4 O3 FORMUL 4 MN 2(MN 2+) FORMUL 6 HOH *496(H2 O) HELIX 1 AA1 GLN A 10 TYR A 15 1 6 HELIX 2 AA2 SER A 28 LEU A 37 1 10 HELIX 3 AA3 THR A 42 GLU A 45 5 4 HELIX 4 AA4 SER A 66 LYS A 68 5 3 HELIX 5 AA5 SER A 98 SER A 114 1 17 HELIX 6 AA6 VAL A 141 PHE A 152 1 12 HELIX 7 AA7 SER A 156 GLY A 162 1 7 HELIX 8 AA8 GLY A 208 LEU A 223 1 16 HELIX 9 AA9 PRO A 224 GLY A 227 5 4 HELIX 10 AB1 GLY A 253 THR A 259 1 7 HELIX 11 AB2 GLU A 297 ALA A 303 1 7 HELIX 12 AB3 TYR A 339 ILE A 341 5 3 HELIX 13 AB4 THR A 375 GLY A 386 1 12 HELIX 14 AB5 GLY A 393 GLY A 397 5 5 HELIX 15 AB6 ALA A 407 LEU A 414 5 8 HELIX 16 AB7 HIS A 417 GLY A 433 1 17 HELIX 17 AB8 SER A 451 ASN A 464 1 14 HELIX 18 AB9 GLY A 465 ALA A 470 1 6 HELIX 19 AC1 ASP A 490 TYR A 500 5 11 HELIX 20 AC2 SER A 502 ASP A 522 1 21 HELIX 21 AC3 LYS A 523 THR A 525 5 3 HELIX 22 AC4 THR A 527 VAL A 534 1 8 HELIX 23 AC5 ALA A 535 GLY A 537 5 3 SHEET 1 AA1 8 ILE A 23 TYR A 25 0 SHEET 2 AA1 8 LEU A 118 CYS A 125 1 O VAL A 120 N VAL A 24 SHEET 3 AA1 8 LEU A 133 THR A 139 -1 O THR A 139 N PHE A 119 SHEET 4 AA1 8 PHE A 167 GLY A 172 1 O ASN A 171 N ILE A 138 SHEET 5 AA1 8 MET A 199 GLY A 203 1 O GLN A 200 N MET A 170 SHEET 6 AA1 8 PHE A 190 ASN A 194 -1 N ALA A 192 O LEU A 201 SHEET 7 AA1 8 LYS A 70 VAL A 73 1 N VAL A 73 O PHE A 193 SHEET 8 AA1 8 LYS A 95 LEU A 97 1 O LYS A 95 N ILE A 72 SHEET 1 AA2 5 GLY A 47 LEU A 49 0 SHEET 2 AA2 5 VAL A 55 VAL A 57 -1 O ALA A 56 N VAL A 48 SHEET 3 AA2 5 LEU A 309 GLU A 311 1 O LEU A 310 N VAL A 57 SHEET 4 AA2 5 ARG A 333 PRO A 337 -1 O ARG A 333 N GLU A 311 SHEET 5 AA2 5 GLY A 284 LYS A 288 -1 N CYS A 285 O TYR A 336 SHEET 1 AA3 5 ARG A 264 GLY A 267 0 SHEET 2 AA3 5 ALA A 229 VAL A 237 -1 N VAL A 237 O ARG A 264 SHEET 3 AA3 5 GLU A 270 TRP A 273 -1 O HIS A 271 N MET A 231 SHEET 4 AA3 5 VAL A 278 ASN A 280 -1 O PHE A 279 N GLY A 272 SHEET 5 AA3 5 LYS A 350 ALA A 351 -1 O ALA A 351 N VAL A 278 SHEET 1 AA4 6 ARG A 264 GLY A 267 0 SHEET 2 AA4 6 ALA A 229 VAL A 237 -1 N VAL A 237 O ARG A 264 SHEET 3 AA4 6 VAL A 243 PHE A 247 -1 O ALA A 244 N ASN A 236 SHEET 4 AA4 6 ALA A 354 THR A 361 1 O LEU A 360 N PHE A 247 SHEET 5 AA4 6 GLN A 435 ASN A 440 1 O TYR A 437 N PHE A 359 SHEET 6 AA4 6 VAL A 371 ARG A 373 -1 N SER A 372 O LEU A 438 SHEET 1 AA5 2 THR A 314 VAL A 315 0 SHEET 2 AA5 2 ILE A 321 ASP A 322 -1 O ASP A 322 N THR A 314 SHEET 1 AA6 2 PHE A 387 LEU A 391 0 SHEET 2 AA6 2 PRO A 401 PHE A 405 -1 O THR A 402 N LYS A 390 SHEET 1 AA7 2 THR A 472 LEU A 475 0 SHEET 2 AA7 2 LEU A 480 PRO A 483 -1 O LEU A 480 N LEU A 475 LINK NZ LYS A 213 MN MN A 604 1555 1555 2.14 LINK NE2 HIS A 232 MN MN A 604 1555 1555 2.10 LINK OG1 THR A 255 MN MN A 603 1555 1555 2.07 LINK OD1 ASP A 269 MN MN A 604 1555 1555 2.13 LINK O2G ATP A 601 MN MN A 604 1555 1555 2.14 LINK O3G ATP A 601 MN MN A 603 1555 1555 2.00 LINK O2B ATP A 601 MN MN A 603 1555 1555 2.04 LINK MN MN A 603 O HOH A 790 1555 1555 2.08 LINK MN MN A 603 O HOH A 793 1555 1555 2.03 LINK MN MN A 603 O HOH A 744 1555 1555 2.01 LINK MN MN A 604 O HOH A 728 1555 1555 2.24 LINK MN MN A 604 O HOH A 887 1555 1555 2.15 CISPEP 1 LYS A 346 PRO A 347 0 9.40 SITE 1 AC1 31 HIS A 232 LEU A 249 ALA A 250 GLY A 251 SITE 2 AC1 31 THR A 252 GLY A 253 LYS A 254 THR A 255 SITE 3 AC1 31 THR A 256 ASP A 269 LYS A 288 GLU A 297 SITE 4 AC1 31 ARG A 333 ARG A 449 ILE A 450 SER A 451 SITE 5 AC1 31 ILE A 452 THR A 455 PYR A 602 MN A 603 SITE 6 AC1 31 MN A 604 HOH A 728 HOH A 744 HOH A 759 SITE 7 AC1 31 HOH A 788 HOH A 790 HOH A 793 HOH A 824 SITE 8 AC1 31 HOH A 853 HOH A 887 HOH A 940 SITE 1 AC2 10 ARG A 65 TYR A 207 LYS A 212 LYS A 213 SITE 2 AC2 10 TYR A 286 ARG A 333 ATP A 601 HOH A 720 SITE 3 AC2 10 HOH A 728 HOH A 887 SITE 1 AC3 5 THR A 255 ATP A 601 HOH A 744 HOH A 790 SITE 2 AC3 5 HOH A 793 SITE 1 AC4 6 LYS A 213 HIS A 232 ASP A 269 ATP A 601 SITE 2 AC4 6 HOH A 728 HOH A 887 CRYST1 124.845 94.417 46.224 90.00 96.08 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008010 0.000000 0.000853 0.00000 SCALE2 0.000000 0.010591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021756 0.00000