HEADER IMMUNE SYSTEM 20-APR-18 6D64 TITLE CRYSTAL STRUCTURE OF HUMAN CD1B IN COMPLEX WITH POPC COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD1B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD1B; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL: HI5; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 EXPRESSION_SYSTEM_CELL: HI5; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID KEYWDS BC8B, CD1, CD1B, PC, POPC, PHOSPHATIDYLCHOLINE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.E.SHAHINE,J.ROSSJOHN REVDAT 3 04-OCT-23 6D64 1 HETSYN LINK REVDAT 2 29-JUL-20 6D64 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 16-JAN-19 6D64 0 JRNL AUTH A.SHAHINE,P.REININK,J.F.REIJNEVELD,S.GRAS,M.HOLZHEIMER, JRNL AUTH 2 T.Y.CHENG,A.J.MINNAARD,J.D.ALTMAN,S.LENZ,J.PRANDI, JRNL AUTH 3 J.KUBLER-KIELB,D.B.MOODY,J.ROSSJOHN,I.VAN RHIJN JRNL TITL A T-CELL RECEPTOR ESCAPE CHANNEL ALLOWS BROAD T-CELL JRNL TITL 2 RESPONSE TO CD1B AND MEMBRANE PHOSPHOLIPIDS. JRNL REF NAT COMMUN V. 10 56 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30610190 JRNL DOI 10.1038/S41467-018-07898-0 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1416 - 4.3694 1.00 2889 145 0.1588 0.1721 REMARK 3 2 4.3694 - 3.4688 1.00 2766 151 0.1411 0.1738 REMARK 3 3 3.4688 - 3.0305 1.00 2712 151 0.1581 0.1829 REMARK 3 4 3.0305 - 2.7535 1.00 2704 153 0.1834 0.2208 REMARK 3 5 2.7535 - 2.5561 1.00 2698 137 0.1815 0.2129 REMARK 3 6 2.5561 - 2.4055 1.00 2675 163 0.1904 0.2369 REMARK 3 7 2.4055 - 2.2850 1.00 2695 136 0.1829 0.2207 REMARK 3 8 2.2850 - 2.1855 1.00 2662 153 0.1826 0.2092 REMARK 3 9 2.1855 - 2.1014 1.00 2671 134 0.1879 0.1836 REMARK 3 10 2.1014 - 2.0289 1.00 2669 155 0.1774 0.2144 REMARK 3 11 2.0289 - 1.9655 1.00 2662 137 0.2036 0.2533 REMARK 3 12 1.9655 - 1.9093 1.00 2648 138 0.2035 0.2475 REMARK 3 13 1.9093 - 1.8590 1.00 2663 131 0.2216 0.2971 REMARK 3 14 1.8590 - 1.8137 1.00 2659 138 0.2458 0.3004 REMARK 3 15 1.8137 - 1.7724 1.00 2672 127 0.2391 0.2551 REMARK 3 16 1.7724 - 1.7347 1.00 2640 136 0.2679 0.3244 REMARK 3 17 1.7347 - 1.7000 1.00 2638 132 0.2615 0.3695 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3497 REMARK 3 ANGLE : 1.053 4773 REMARK 3 CHIRALITY : 0.057 539 REMARK 3 PLANARITY : 0.006 587 REMARK 3 DIHEDRAL : 17.932 2079 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1180 -13.2027 9.5498 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: 0.1199 REMARK 3 T33: 0.1495 T12: -0.0099 REMARK 3 T13: 0.0107 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 1.4175 L22: 1.3816 REMARK 3 L33: 2.5454 L12: -0.0496 REMARK 3 L13: -0.4872 L23: -0.3056 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: 0.0213 S13: 0.0006 REMARK 3 S21: -0.0603 S22: -0.0597 S23: -0.2182 REMARK 3 S31: -0.0558 S32: 0.1959 S33: -0.0103 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4243 -24.7233 5.6249 REMARK 3 T TENSOR REMARK 3 T11: 0.1288 T22: 0.1438 REMARK 3 T33: 0.1615 T12: 0.0099 REMARK 3 T13: 0.0089 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.8838 L22: 0.8309 REMARK 3 L33: 5.1531 L12: 0.0660 REMARK 3 L13: -0.4739 L23: 0.4068 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: 0.1216 S13: -0.2170 REMARK 3 S21: -0.0431 S22: 0.0131 S23: -0.1156 REMARK 3 S31: 0.5399 S32: 0.2092 S33: 0.0156 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8294 2.2436 16.8720 REMARK 3 T TENSOR REMARK 3 T11: 0.1530 T22: 0.1227 REMARK 3 T33: 0.1256 T12: 0.0101 REMARK 3 T13: 0.0180 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 4.8762 L22: 1.6238 REMARK 3 L33: 0.4636 L12: -2.2845 REMARK 3 L13: 0.9629 L23: -0.5607 REMARK 3 S TENSOR REMARK 3 S11: 0.0981 S12: 0.1267 S13: 0.0084 REMARK 3 S21: -0.1162 S22: -0.0552 S23: 0.0207 REMARK 3 S31: -0.0149 S32: 0.0113 S33: -0.0275 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7895 1.3968 0.5749 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.2432 REMARK 3 T33: 0.1598 T12: 0.0887 REMARK 3 T13: -0.0104 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 3.4351 L22: 6.3121 REMARK 3 L33: 7.3077 L12: 1.5292 REMARK 3 L13: -0.1043 L23: 3.9151 REMARK 3 S TENSOR REMARK 3 S11: -0.0513 S12: 0.5654 S13: -0.1470 REMARK 3 S21: -0.1388 S22: -0.0995 S23: 0.1777 REMARK 3 S31: 0.0817 S32: -0.1185 S33: 0.1446 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D64 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000234047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48206 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5WL1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, 0.2M SODIUM IODIDE, ETHYLENE REMARK 280 GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.99050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.38300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.01600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.38300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.99050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.01600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 2 REMARK 465 ALA A 3 REMARK 465 PHE A 286 REMARK 465 GLU A 287 REMARK 465 ALA A 288 REMARK 465 GLN A 289 REMARK 465 LYS A 290 REMARK 465 ILE A 291 REMARK 465 GLU A 292 REMARK 465 TRP A 293 REMARK 465 HIS A 294 REMARK 465 GLU A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 MET B 101 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 91 CD CE NZ REMARK 470 GLN A 152 CG CD OE1 NE2 REMARK 470 LYS B 2 CE NZ REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 LYS B 50 CD CE NZ REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 LYS B 96 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 767 O HOH A 813 1.49 REMARK 500 O HOH A 920 O HOH A 921 1.84 REMARK 500 O HOH A 801 O HOH A 909 1.85 REMARK 500 O HOH A 593 O HOH A 705 1.94 REMARK 500 NE2 GLN A 228 O HOH A 501 1.97 REMARK 500 O3 NAG D 3 O HOH A 502 2.01 REMARK 500 O HOH A 542 O HOH A 703 2.02 REMARK 500 O13 POV A 417 O HOH A 503 2.03 REMARK 500 O HOH A 543 O HOH A 552 2.04 REMARK 500 O HOH A 847 O HOH A 868 2.04 REMARK 500 O HOH A 742 O HOH A 818 2.05 REMARK 500 O HOH A 559 O HOH A 695 2.06 REMARK 500 O HOH B 317 O HOH B 404 2.07 REMARK 500 O HOH A 527 O HOH A 792 2.08 REMARK 500 O HOH B 332 O HOH B 406 2.08 REMARK 500 OH TYR A 151 O HOH A 504 2.10 REMARK 500 OH TYR A 151 O HOH A 505 2.13 REMARK 500 O HOH A 517 O HOH A 673 2.13 REMARK 500 O HOH A 767 O HOH A 883 2.14 REMARK 500 O HOH A 830 O HOH A 906 2.15 REMARK 500 O HOH A 726 O HOH A 840 2.18 REMARK 500 O6 NAG E 1 O HOH A 506 2.19 REMARK 500 O HOH A 656 O HOH A 817 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 797 O HOH A 880 1455 1.83 REMARK 500 O HOH A 835 O HOH A 842 2454 2.07 REMARK 500 O HOH A 660 O HOH A 899 2455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -115.73 52.06 REMARK 500 ASP A 33 -116.68 52.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 919 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 920 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 921 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 922 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 923 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH B 415 DISTANCE = 6.58 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CUY A 418 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 427 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 568 O REMARK 620 2 HOH A 593 O 105.4 REMARK 620 N 1 DBREF 6D64 A 2 278 UNP P29016 CD1B_HUMAN 20 296 DBREF 6D64 B 3 101 UNP P61769 B2MG_HUMAN 21 119 SEQADV 6D64 GLY A 279 UNP P29016 EXPRESSION TAG SEQADV 6D64 SER A 280 UNP P29016 EXPRESSION TAG SEQADV 6D64 GLY A 281 UNP P29016 EXPRESSION TAG SEQADV 6D64 LEU A 282 UNP P29016 EXPRESSION TAG SEQADV 6D64 ASN A 283 UNP P29016 EXPRESSION TAG SEQADV 6D64 ASP A 284 UNP P29016 EXPRESSION TAG SEQADV 6D64 ILE A 285 UNP P29016 EXPRESSION TAG SEQADV 6D64 PHE A 286 UNP P29016 EXPRESSION TAG SEQADV 6D64 GLU A 287 UNP P29016 EXPRESSION TAG SEQADV 6D64 ALA A 288 UNP P29016 EXPRESSION TAG SEQADV 6D64 GLN A 289 UNP P29016 EXPRESSION TAG SEQADV 6D64 LYS A 290 UNP P29016 EXPRESSION TAG SEQADV 6D64 ILE A 291 UNP P29016 EXPRESSION TAG SEQADV 6D64 GLU A 292 UNP P29016 EXPRESSION TAG SEQADV 6D64 TRP A 293 UNP P29016 EXPRESSION TAG SEQADV 6D64 HIS A 294 UNP P29016 EXPRESSION TAG SEQADV 6D64 GLU A 295 UNP P29016 EXPRESSION TAG SEQADV 6D64 HIS A 296 UNP P29016 EXPRESSION TAG SEQADV 6D64 HIS A 297 UNP P29016 EXPRESSION TAG SEQADV 6D64 HIS A 298 UNP P29016 EXPRESSION TAG SEQADV 6D64 HIS A 299 UNP P29016 EXPRESSION TAG SEQADV 6D64 HIS A 300 UNP P29016 EXPRESSION TAG SEQADV 6D64 HIS A 301 UNP P29016 EXPRESSION TAG SEQADV 6D64 PRO B 1 UNP P61769 EXPRESSION TAG SEQADV 6D64 LYS B 2 UNP P61769 EXPRESSION TAG SEQRES 1 A 300 HIS ALA PHE GLN GLY PRO THR SER PHE HIS VAL ILE GLN SEQRES 2 A 300 THR SER SER PHE THR ASN SER THR TRP ALA GLN THR GLN SEQRES 3 A 300 GLY SER GLY TRP LEU ASP ASP LEU GLN ILE HIS GLY TRP SEQRES 4 A 300 ASP SER ASP SER GLY THR ALA ILE PHE LEU LYS PRO TRP SEQRES 5 A 300 SER LYS GLY ASN PHE SER ASP LYS GLU VAL ALA GLU LEU SEQRES 6 A 300 GLU GLU ILE PHE ARG VAL TYR ILE PHE GLY PHE ALA ARG SEQRES 7 A 300 GLU VAL GLN ASP PHE ALA GLY ASP PHE GLN MET LYS TYR SEQRES 8 A 300 PRO PHE GLU ILE GLN GLY ILE ALA GLY CYS GLU LEU HIS SEQRES 9 A 300 SER GLY GLY ALA ILE VAL SER PHE LEU ARG GLY ALA LEU SEQRES 10 A 300 GLY GLY LEU ASP PHE LEU SER VAL LYS ASN ALA SER CYS SEQRES 11 A 300 VAL PRO SER PRO GLU GLY GLY SER ARG ALA GLN LYS PHE SEQRES 12 A 300 CYS ALA LEU ILE ILE GLN TYR GLN GLY ILE MET GLU THR SEQRES 13 A 300 VAL ARG ILE LEU LEU TYR GLU THR CYS PRO ARG TYR LEU SEQRES 14 A 300 LEU GLY VAL LEU ASN ALA GLY LYS ALA ASP LEU GLN ARG SEQRES 15 A 300 GLN VAL LYS PRO GLU ALA TRP LEU SER SER GLY PRO SER SEQRES 16 A 300 PRO GLY PRO GLY ARG LEU GLN LEU VAL CYS HIS VAL SER SEQRES 17 A 300 GLY PHE TYR PRO LYS PRO VAL TRP VAL MET TRP MET ARG SEQRES 18 A 300 GLY GLU GLN GLU GLN GLN GLY THR GLN LEU GLY ASP ILE SEQRES 19 A 300 LEU PRO ASN ALA ASN TRP THR TRP TYR LEU ARG ALA THR SEQRES 20 A 300 LEU ASP VAL ALA ASP GLY GLU ALA ALA GLY LEU SER CYS SEQRES 21 A 300 ARG VAL LYS HIS SER SER LEU GLU GLY GLN ASP ILE ILE SEQRES 22 A 300 LEU TYR TRP ARG GLY SER GLY LEU ASN ASP ILE PHE GLU SEQRES 23 A 300 ALA GLN LYS ILE GLU TRP HIS GLU HIS HIS HIS HIS HIS SEQRES 24 A 300 HIS SEQRES 1 B 101 PRO LYS ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER SEQRES 2 B 101 ARG HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN SEQRES 3 B 101 CYS TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL SEQRES 4 B 101 ASP LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU SEQRES 5 B 101 HIS SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR SEQRES 6 B 101 LEU LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP SEQRES 7 B 101 GLU TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN SEQRES 8 B 101 PRO LYS ILE VAL LYS TRP ASP ARG ASP MET HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET FUC C 6 10 HET FUC C 7 10 HET NAG D 1 14 HET FUC D 2 10 HET NAG D 3 14 HET FUC D 4 10 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET MAN E 5 11 HET POV A 417 52 HET CUY A 418 37 HET CL A 419 1 HET CL A 420 1 HET CL A 421 1 HET CL A 422 1 HET CL A 423 1 HET CL A 424 1 HET EDO A 425 4 HET EDO A 426 4 HET NA A 427 1 HET IOD A 428 1 HET IOD A 429 1 HET CL B 201 1 HET EDO B 202 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM POV (2S)-3-(HEXADECANOYLOXY)-2-[(9Z)-OCTADEC-9- HETNAM 2 POV ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL PHOSPHATE HETNAM CUY TETRACOSYL OCTADECANOATE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM IOD IODIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN POV POPC HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 FUC 4(C6 H12 O5) FORMUL 6 POV C42 H82 N O8 P FORMUL 7 CUY C42 H84 O2 FORMUL 8 CL 7(CL 1-) FORMUL 14 EDO 3(C2 H6 O2) FORMUL 16 NA NA 1+ FORMUL 17 IOD 2(I 1-) FORMUL 21 HOH *538(H2 O) HELIX 1 AA1 SER A 59 ALA A 85 1 27 HELIX 2 AA2 GLY A 137 ILE A 149 1 13 HELIX 3 AA3 GLY A 153 GLU A 164 1 12 HELIX 4 AA4 GLU A 164 GLY A 177 1 14 HELIX 5 AA5 GLY A 177 GLN A 182 1 6 HELIX 6 AA6 GLY A 254 ALA A 256 5 3 HELIX 7 AA7 HIS A 265 GLU A 269 5 5 SHEET 1 AA1 8 THR A 46 PHE A 49 0 SHEET 2 AA1 8 LEU A 35 ASP A 41 -1 N ASP A 41 O THR A 46 SHEET 3 AA1 8 TRP A 23 LEU A 32 -1 N LEU A 32 O LEU A 35 SHEET 4 AA1 8 SER A 9 ASN A 20 -1 N SER A 17 O GLN A 25 SHEET 5 AA1 8 PHE A 94 LEU A 104 -1 O PHE A 94 N PHE A 18 SHEET 6 AA1 8 ILE A 110 LEU A 118 -1 O ARG A 115 N ILE A 99 SHEET 7 AA1 8 LEU A 121 LYS A 127 -1 O PHE A 123 N GLY A 116 SHEET 8 AA1 8 SER A 130 PRO A 133 -1 O VAL A 132 N SER A 125 SHEET 1 AA2 4 GLU A 188 SER A 193 0 SHEET 2 AA2 4 ARG A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA2 4 THR A 242 ALA A 252 -1 O VAL A 251 N LEU A 202 SHEET 4 AA2 4 GLN A 231 LEU A 232 -1 N GLN A 231 O THR A 248 SHEET 1 AA3 4 GLU A 188 SER A 193 0 SHEET 2 AA3 4 ARG A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA3 4 THR A 242 ALA A 252 -1 O VAL A 251 N LEU A 202 SHEET 4 AA3 4 LEU A 236 ASN A 238 -1 N LEU A 236 O TYR A 244 SHEET 1 AA4 4 GLN A 225 GLU A 226 0 SHEET 2 AA4 4 TRP A 217 ARG A 222 -1 N ARG A 222 O GLN A 225 SHEET 3 AA4 4 LEU A 259 LYS A 264 -1 O SER A 260 N MET A 221 SHEET 4 AA4 4 ILE A 273 TYR A 276 -1 O LEU A 275 N CYS A 261 SHEET 1 AA5 4 LYS B 8 SER B 13 0 SHEET 2 AA5 4 ASN B 23 PHE B 32 -1 O ASN B 26 N TYR B 12 SHEET 3 AA5 4 PHE B 64 PHE B 72 -1 O THR B 70 N LEU B 25 SHEET 4 AA5 4 GLU B 52 HIS B 53 -1 N GLU B 52 O TYR B 69 SHEET 1 AA6 4 LYS B 8 SER B 13 0 SHEET 2 AA6 4 ASN B 23 PHE B 32 -1 O ASN B 26 N TYR B 12 SHEET 3 AA6 4 PHE B 64 PHE B 72 -1 O THR B 70 N LEU B 25 SHEET 4 AA6 4 SER B 57 PHE B 58 -1 N SER B 57 O TYR B 65 SHEET 1 AA7 4 GLU B 46 ARG B 47 0 SHEET 2 AA7 4 GLU B 38 LYS B 43 -1 N LYS B 43 O GLU B 46 SHEET 3 AA7 4 TYR B 80 ASN B 85 -1 O ARG B 83 N ASP B 40 SHEET 4 AA7 4 LYS B 93 LYS B 96 -1 O LYS B 93 N VAL B 84 SSBOND 1 CYS A 102 CYS A 166 1555 1555 2.10 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.07 SSBOND 3 CYS A 206 CYS A 261 1555 1555 2.03 SSBOND 4 CYS B 27 CYS B 82 1555 1555 2.04 LINK ND2 ASN A 20 C1 NAG D 1 1555 1555 1.40 LINK ND2 ASN A 57 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 128 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O3 NAG C 1 C1 FUC C 6 1555 1555 1.47 LINK O6 NAG C 1 C1 FUC C 7 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.44 LINK O3 NAG D 1 C1 FUC D 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 3 1555 1555 1.40 LINK O6 NAG D 1 C1 FUC D 4 1555 1555 1.43 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O3 NAG E 1 C1 MAN E 5 1555 1555 1.45 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.44 LINK NA NA A 427 O HOH A 568 1555 1555 2.90 LINK NA NA A 427 O HOH A 593 1555 1555 2.97 CISPEP 1 TYR A 92 PRO A 93 0 -1.03 CISPEP 2 TYR A 212 PRO A 213 0 0.79 CISPEP 3 HIS B 33 PRO B 34 0 2.62 CRYST1 57.981 80.032 92.766 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017247 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012495 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010780 0.00000