HEADER LYASE 01-MAY-18 6DAO TITLE NAHE WT SELENOMETHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANS-O-HYDROXYBENZYLIDENEPYRUVATE HYDRATASE-ALDOLASE; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: THBPA HYDRATASE-ALDOLASE,2'-HYDROXYBENZALPYRUVATE ALDOLASE; COMPND 5 EC: 4.1.2.45; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_COMMON: ARTHROBACTER SIDEROCAPSULATUS; SOURCE 4 ORGANISM_TAXID: 303; SOURCE 5 GENE: NAHE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ARCTIC EXPRESS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ALDOLASE, NAHE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.P.MEDELLIN,J.A.LEVIEUX,Y.J.ZHANG,C.P.WHITMAN REVDAT 3 01-JAN-20 6DAO 1 REMARK REVDAT 2 20-NOV-19 6DAO 1 JRNL REVDAT 1 08-MAY-19 6DAO 0 JRNL AUTH J.A.LEVIEUX,B.MEDELLIN,W.H.JOHNSON JR.,K.ERWIN,W.LI, JRNL AUTH 2 I.A.JOHNSON,Y.J.ZHANG,C.P.WHITMAN JRNL TITL STRUCTURAL CHARACTERIZATION OF THE HYDRATASE-ALDOLASES, NAHE JRNL TITL 2 AND PHDJ: IMPLICATIONS FOR THE SPECIFICITY, CATALYSIS, AND JRNL TITL 3 N-ACETYLNEURAMINATE LYASE SUBGROUP OF THE ALDOLASE JRNL TITL 4 SUPERFAMILY. JRNL REF BIOCHEMISTRY V. 57 3524 2018 JRNL REFN ISSN 0006-2960 JRNL PMID 29856600 JRNL DOI 10.1021/ACS.BIOCHEM.8B00532 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 42138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.730 REMARK 3 FREE R VALUE TEST SET COUNT : 4098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0874 - 5.9505 1.00 1429 175 0.1626 0.1666 REMARK 3 2 5.9505 - 4.7259 1.00 1352 156 0.1484 0.1629 REMARK 3 3 4.7259 - 4.1294 1.00 1375 123 0.1227 0.1406 REMARK 3 4 4.1294 - 3.7522 1.00 1329 142 0.1213 0.1500 REMARK 3 5 3.7522 - 3.4834 1.00 1350 132 0.1355 0.1837 REMARK 3 6 3.4834 - 3.2782 1.00 1329 118 0.1457 0.1529 REMARK 3 7 3.2782 - 3.1141 1.00 1354 125 0.1438 0.1858 REMARK 3 8 3.1141 - 2.9786 1.00 1316 138 0.1455 0.1838 REMARK 3 9 2.9786 - 2.8639 1.00 1327 131 0.1603 0.2002 REMARK 3 10 2.8639 - 2.7652 1.00 1294 154 0.1481 0.2234 REMARK 3 11 2.7652 - 2.6787 1.00 1264 182 0.1539 0.1691 REMARK 3 12 2.6787 - 2.6022 1.00 1305 150 0.1529 0.1903 REMARK 3 13 2.6022 - 2.5337 1.00 1319 134 0.1522 0.2080 REMARK 3 14 2.5337 - 2.4719 1.00 1268 166 0.1529 0.2066 REMARK 3 15 2.4719 - 2.4157 1.00 1315 135 0.1500 0.1785 REMARK 3 16 2.4157 - 2.3643 1.00 1294 134 0.1505 0.1950 REMARK 3 17 2.3643 - 2.3170 1.00 1290 154 0.1462 0.2192 REMARK 3 18 2.3170 - 2.2733 1.00 1296 154 0.1435 0.2016 REMARK 3 19 2.2733 - 2.2327 1.00 1295 125 0.1493 0.2076 REMARK 3 20 2.2327 - 2.1948 1.00 1325 119 0.1420 0.1951 REMARK 3 21 2.1948 - 2.1594 1.00 1290 152 0.1448 0.1931 REMARK 3 22 2.1594 - 2.1262 1.00 1293 132 0.1544 0.1862 REMARK 3 23 2.1262 - 2.0950 1.00 1287 147 0.1483 0.2152 REMARK 3 24 2.0950 - 2.0654 1.00 1308 125 0.1399 0.2052 REMARK 3 25 2.0654 - 2.0375 1.00 1282 138 0.1445 0.1996 REMARK 3 26 2.0375 - 2.0111 1.00 1259 175 0.1507 0.2217 REMARK 3 27 2.0111 - 1.9859 0.99 1288 116 0.1470 0.2207 REMARK 3 28 1.9859 - 1.9620 1.00 1315 150 0.1567 0.1956 REMARK 3 29 1.9620 - 1.9392 0.99 1292 116 0.1647 0.2217 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5177 REMARK 3 ANGLE : 0.874 7044 REMARK 3 CHIRALITY : 0.050 777 REMARK 3 PLANARITY : 0.005 908 REMARK 3 DIHEDRAL : 7.113 3102 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00, 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42138 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.939 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M 2-MORPHOLIN-4-YLETHANESULFONIC REMARK 280 ACID (MES) BUFFER (PH 6.5-8.0) AND 21-26% PEG 2000 MONOMETHYL REMARK 280 ETHER (MME), PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.87533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.43767 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.43767 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.87533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 147.76125 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 311.06367 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 147.76125 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 311.06367 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 690 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 699 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 711 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE B 1 REMARK 465 LEU B 2 REMARK 465 ASN B 3 REMARK 465 LYS B 4 REMARK 465 VAL B 5 REMARK 465 ILE B 6 REMARK 465 LYS B 7 REMARK 465 MSE A 1 REMARK 465 LEU A 2 REMARK 465 ASN A 3 REMARK 465 LYS A 4 REMARK 465 VAL A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 650 O HOH A 706 1.70 REMARK 500 NH1 ARG A 89 O HOH A 401 1.81 REMARK 500 OE2 GLU A 243 O HOH A 402 1.92 REMARK 500 O HOH B 528 O HOH B 670 1.98 REMARK 500 O HOH A 468 O HOH A 556 1.98 REMARK 500 O HOH B 699 O HOH B 703 2.00 REMARK 500 O HOH B 408 O HOH B 670 2.03 REMARK 500 OG SER A 330 O HOH A 403 2.06 REMARK 500 OG SER B 247 O HOH B 401 2.08 REMARK 500 OD1 ASP B 164 O HOH B 402 2.08 REMARK 500 NZ LYS A 183 O HOH A 404 2.10 REMARK 500 O HOH B 666 O HOH A 428 2.14 REMARK 500 OE2 GLU B 112 O HOH B 403 2.15 REMARK 500 O HOH B 625 O HOH B 646 2.16 REMARK 500 O HOH A 405 O HOH A 650 2.16 REMARK 500 O HOH B 619 O HOH B 644 2.17 REMARK 500 O HOH B 615 O HOH B 712 2.17 REMARK 500 O HOH B 667 O HOH B 703 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 721 O HOH B 721 5677 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 141 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 162 -48.42 71.52 REMARK 500 LEU B 185 -169.95 -74.30 REMARK 500 TYR B 304 50.79 -92.73 REMARK 500 LYS A 162 -52.30 69.17 REMARK 500 LEU A 185 -118.19 -96.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 722 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 723 DISTANCE = 6.67 ANGSTROMS DBREF 6DAO B 1 331 UNP Q51947 NAHE1_PSEPU 1 331 DBREF 6DAO A 1 331 UNP Q51947 NAHE1_PSEPU 1 331 SEQRES 1 B 331 MSE LEU ASN LYS VAL ILE LYS THR THR ARG LEU THR ALA SEQRES 2 B 331 GLU ASP ILE ASN GLY ALA TRP THR ILE MSE PRO THR PRO SEQRES 3 B 331 SER THR PRO ASP ALA SER ASP TRP ARG SER THR ASN THR SEQRES 4 B 331 VAL ASP LEU ASP GLU THR ALA ARG ILE VAL GLU GLU LEU SEQRES 5 B 331 ILE ALA ALA GLY VAL ASN GLY ILE LEU SER MSE GLY THR SEQRES 6 B 331 PHE GLY GLU CYS ALA THR LEU THR TRP GLU GLU LYS ARG SEQRES 7 B 331 ASP TYR VAL SER THR VAL VAL GLU THR ILE ARG GLY ARG SEQRES 8 B 331 VAL PRO TYR PHE CYS GLY THR THR ALA LEU ASN THR ARG SEQRES 9 B 331 GLU VAL ILE ARG GLN THR ARG GLU LEU ILE ASP ILE GLY SEQRES 10 B 331 ALA ASN GLY THR MSE LEU GLY VAL PRO MSE TRP VAL LYS SEQRES 11 B 331 MSE ASP LEU PRO THR ALA VAL GLN PHE TYR ARG ASP VAL SEQRES 12 B 331 ALA GLY ALA VAL PRO GLU ALA ALA ILE ALA ILE TYR ALA SEQRES 13 B 331 ASN PRO GLU ALA PHE LYS PHE ASP PHE PRO ARG PRO PHE SEQRES 14 B 331 TRP ALA GLU MSE SER LYS ILE PRO GLN VAL VAL THR ALA SEQRES 15 B 331 LYS TYR LEU GLY ILE GLY MSE LEU ASP LEU ASP LEU LYS SEQRES 16 B 331 LEU ALA PRO ASN ILE ARG PHE LEU PRO HIS GLU ASP ASP SEQRES 17 B 331 TYR TYR ALA ALA ALA ARG ILE ASN PRO GLU ARG ILE THR SEQRES 18 B 331 ALA PHE TRP SER SER GLY ALA MSE CYS GLY PRO ALA THR SEQRES 19 B 331 ALA ILE MSE LEU ARG ASP GLU VAL GLU ARG ALA LYS SER SEQRES 20 B 331 THR GLY ASP TRP ILE LYS ALA LYS ALA ILE SER ASP ASP SEQRES 21 B 331 MSE ARG ALA ALA ASP SER THR LEU PHE PRO ARG GLY ASP SEQRES 22 B 331 PHE SER GLU PHE SER LYS TYR ASN ILE GLY LEU GLU LYS SEQRES 23 B 331 ALA ARG MSE ASP ALA ALA GLY TRP LEU LYS ALA GLY PRO SEQRES 24 B 331 CYS ARG PRO PRO TYR ASN LEU VAL PRO GLU ASP TYR LEU SEQRES 25 B 331 VAL GLY ALA GLN LYS SER GLY LYS ALA TRP ALA ALA LEU SEQRES 26 B 331 HIS ALA LYS TYR SER LYS SEQRES 1 A 331 MSE LEU ASN LYS VAL ILE LYS THR THR ARG LEU THR ALA SEQRES 2 A 331 GLU ASP ILE ASN GLY ALA TRP THR ILE MSE PRO THR PRO SEQRES 3 A 331 SER THR PRO ASP ALA SER ASP TRP ARG SER THR ASN THR SEQRES 4 A 331 VAL ASP LEU ASP GLU THR ALA ARG ILE VAL GLU GLU LEU SEQRES 5 A 331 ILE ALA ALA GLY VAL ASN GLY ILE LEU SER MSE GLY THR SEQRES 6 A 331 PHE GLY GLU CYS ALA THR LEU THR TRP GLU GLU LYS ARG SEQRES 7 A 331 ASP TYR VAL SER THR VAL VAL GLU THR ILE ARG GLY ARG SEQRES 8 A 331 VAL PRO TYR PHE CYS GLY THR THR ALA LEU ASN THR ARG SEQRES 9 A 331 GLU VAL ILE ARG GLN THR ARG GLU LEU ILE ASP ILE GLY SEQRES 10 A 331 ALA ASN GLY THR MSE LEU GLY VAL PRO MSE TRP VAL LYS SEQRES 11 A 331 MSE ASP LEU PRO THR ALA VAL GLN PHE TYR ARG ASP VAL SEQRES 12 A 331 ALA GLY ALA VAL PRO GLU ALA ALA ILE ALA ILE TYR ALA SEQRES 13 A 331 ASN PRO GLU ALA PHE LYS PHE ASP PHE PRO ARG PRO PHE SEQRES 14 A 331 TRP ALA GLU MSE SER LYS ILE PRO GLN VAL VAL THR ALA SEQRES 15 A 331 LYS TYR LEU GLY ILE GLY MSE LEU ASP LEU ASP LEU LYS SEQRES 16 A 331 LEU ALA PRO ASN ILE ARG PHE LEU PRO HIS GLU ASP ASP SEQRES 17 A 331 TYR TYR ALA ALA ALA ARG ILE ASN PRO GLU ARG ILE THR SEQRES 18 A 331 ALA PHE TRP SER SER GLY ALA MSE CYS GLY PRO ALA THR SEQRES 19 A 331 ALA ILE MSE LEU ARG ASP GLU VAL GLU ARG ALA LYS SER SEQRES 20 A 331 THR GLY ASP TRP ILE LYS ALA LYS ALA ILE SER ASP ASP SEQRES 21 A 331 MSE ARG ALA ALA ASP SER THR LEU PHE PRO ARG GLY ASP SEQRES 22 A 331 PHE SER GLU PHE SER LYS TYR ASN ILE GLY LEU GLU LYS SEQRES 23 A 331 ALA ARG MSE ASP ALA ALA GLY TRP LEU LYS ALA GLY PRO SEQRES 24 A 331 CYS ARG PRO PRO TYR ASN LEU VAL PRO GLU ASP TYR LEU SEQRES 25 A 331 VAL GLY ALA GLN LYS SER GLY LYS ALA TRP ALA ALA LEU SEQRES 26 A 331 HIS ALA LYS TYR SER LYS MODRES 6DAO MSE B 23 MET MODIFIED RESIDUE MODRES 6DAO MSE B 63 MET MODIFIED RESIDUE MODRES 6DAO MSE B 122 MET MODIFIED RESIDUE MODRES 6DAO MSE B 127 MET MODIFIED RESIDUE MODRES 6DAO MSE B 131 MET MODIFIED RESIDUE MODRES 6DAO MSE B 173 MET MODIFIED RESIDUE MODRES 6DAO MSE B 189 MET MODIFIED RESIDUE MODRES 6DAO MSE B 229 MET MODIFIED RESIDUE MODRES 6DAO MSE B 237 MET MODIFIED RESIDUE MODRES 6DAO MSE B 261 MET MODIFIED RESIDUE MODRES 6DAO MSE B 289 MET MODIFIED RESIDUE MODRES 6DAO MSE A 23 MET MODIFIED RESIDUE MODRES 6DAO MSE A 63 MET MODIFIED RESIDUE MODRES 6DAO MSE A 122 MET MODIFIED RESIDUE MODRES 6DAO MSE A 127 MET MODIFIED RESIDUE MODRES 6DAO MSE A 131 MET MODIFIED RESIDUE MODRES 6DAO MSE A 173 MET MODIFIED RESIDUE MODRES 6DAO MSE A 189 MET MODIFIED RESIDUE MODRES 6DAO MSE A 229 MET MODIFIED RESIDUE MODRES 6DAO MSE A 237 MET MODIFIED RESIDUE MODRES 6DAO MSE A 261 MET MODIFIED RESIDUE MODRES 6DAO MSE A 289 MET MODIFIED RESIDUE HET MSE B 23 8 HET MSE B 63 8 HET MSE B 122 8 HET MSE B 127 8 HET MSE B 131 8 HET MSE B 173 8 HET MSE B 189 8 HET MSE B 229 8 HET MSE B 237 8 HET MSE B 261 8 HET MSE B 289 8 HET MSE A 23 8 HET MSE A 63 8 HET MSE A 122 8 HET MSE A 127 8 HET MSE A 131 8 HET MSE A 173 8 HET MSE A 189 8 HET MSE A 229 8 HET MSE A 237 8 HET MSE A 261 8 HET MSE A 289 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 3 HOH *637(H2 O) HELIX 1 AA1 THR B 12 ILE B 16 5 5 HELIX 2 AA2 ASP B 41 GLY B 56 1 16 HELIX 3 AA3 THR B 73 ARG B 89 1 17 HELIX 4 AA4 ASN B 102 GLY B 117 1 16 HELIX 5 AA5 ASP B 132 VAL B 147 1 16 HELIX 6 AA6 ASN B 157 LYS B 162 1 6 HELIX 7 AA7 PRO B 166 LYS B 175 1 10 HELIX 8 AA8 MSE B 189 ALA B 197 1 9 HELIX 9 AA9 HIS B 205 ASN B 216 1 12 HELIX 10 AB1 SER B 226 GLY B 231 5 6 HELIX 11 AB2 PRO B 232 GLY B 249 1 18 HELIX 12 AB3 TRP B 251 ASP B 265 1 15 HELIX 13 AB4 PHE B 269 GLY B 272 5 4 HELIX 14 AB5 ASP B 273 TYR B 280 1 8 HELIX 15 AB6 TYR B 280 GLY B 293 1 14 HELIX 16 AB7 PRO B 308 TYR B 329 1 22 HELIX 17 AB8 THR A 12 ILE A 16 5 5 HELIX 18 AB9 ASP A 41 GLY A 56 1 16 HELIX 19 AC1 THR A 73 ARG A 89 1 17 HELIX 20 AC2 ASN A 102 GLY A 117 1 16 HELIX 21 AC3 ASP A 132 VAL A 147 1 16 HELIX 22 AC4 ASN A 157 LYS A 162 1 6 HELIX 23 AC5 PRO A 166 SER A 174 1 9 HELIX 24 AC6 MSE A 189 ALA A 197 1 9 HELIX 25 AC7 HIS A 205 ASN A 216 1 12 HELIX 26 AC8 SER A 226 GLY A 231 5 6 HELIX 27 AC9 PRO A 232 GLY A 249 1 18 HELIX 28 AD1 TRP A 251 SER A 266 1 16 HELIX 29 AD2 PHE A 269 GLY A 272 5 4 HELIX 30 AD3 ASP A 273 TYR A 280 1 8 HELIX 31 AD4 TYR A 280 GLY A 293 1 14 HELIX 32 AD5 PRO A 308 SER A 330 1 23 SHEET 1 AA1 8 ARG B 201 LEU B 203 0 SHEET 2 AA1 8 VAL B 179 LYS B 183 1 N ALA B 182 O LEU B 203 SHEET 3 AA1 8 ALA B 151 TYR B 155 1 N ILE B 154 O LYS B 183 SHEET 4 AA1 8 GLY B 120 LEU B 123 1 N LEU B 123 O ALA B 153 SHEET 5 AA1 8 TYR B 94 GLY B 97 1 N CYS B 96 O MSE B 122 SHEET 6 AA1 8 GLY B 59 SER B 62 1 N ILE B 60 O PHE B 95 SHEET 7 AA1 8 GLY B 18 MSE B 23 1 N THR B 21 O LEU B 61 SHEET 8 AA1 8 ALA B 222 SER B 225 1 O PHE B 223 N TRP B 20 SHEET 1 AA2 8 ARG A 201 LEU A 203 0 SHEET 2 AA2 8 VAL A 179 LYS A 183 1 N VAL A 180 O ARG A 201 SHEET 3 AA2 8 ALA A 151 TYR A 155 1 N ILE A 154 O LYS A 183 SHEET 4 AA2 8 GLY A 120 LEU A 123 1 N LEU A 123 O ALA A 153 SHEET 5 AA2 8 TYR A 94 GLY A 97 1 N CYS A 96 O MSE A 122 SHEET 6 AA2 8 GLY A 59 SER A 62 1 N ILE A 60 O PHE A 95 SHEET 7 AA2 8 GLY A 18 MSE A 23 1 N MSE A 23 O LEU A 61 SHEET 8 AA2 8 ALA A 222 SER A 225 1 O PHE A 223 N TRP A 20 LINK C ILE B 22 N MSE B 23 1555 1555 1.33 LINK C MSE B 23 N PRO B 24 1555 1555 1.33 LINK C SER B 62 N MSE B 63 1555 1555 1.33 LINK C MSE B 63 N GLY B 64 1555 1555 1.34 LINK C THR B 121 N MSE B 122 1555 1555 1.34 LINK C MSE B 122 N LEU B 123 1555 1555 1.33 LINK C PRO B 126 N MSE B 127 1555 1555 1.33 LINK C MSE B 127 N TRP B 128 1555 1555 1.34 LINK C LYS B 130 N MSE B 131 1555 1555 1.33 LINK C MSE B 131 N ASP B 132 1555 1555 1.33 LINK C GLU B 172 N MSE B 173 1555 1555 1.33 LINK C MSE B 173 N SER B 174 1555 1555 1.33 LINK C GLY B 188 N MSE B 189 1555 1555 1.33 LINK C MSE B 189 N LEU B 190 1555 1555 1.33 LINK C ALA B 228 N MSE B 229 1555 1555 1.34 LINK C MSE B 229 N CYS B 230 1555 1555 1.33 LINK C ILE B 236 N MSE B 237 1555 1555 1.33 LINK C MSE B 237 N LEU B 238 1555 1555 1.34 LINK C ASP B 260 N MSE B 261 1555 1555 1.33 LINK C MSE B 261 N ARG B 262 1555 1555 1.33 LINK C ARG B 288 N MSE B 289 1555 1555 1.33 LINK C MSE B 289 N ASP B 290 1555 1555 1.34 LINK C ILE A 22 N MSE A 23 1555 1555 1.34 LINK C MSE A 23 N PRO A 24 1555 1555 1.34 LINK C SER A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N GLY A 64 1555 1555 1.32 LINK C THR A 121 N MSE A 122 1555 1555 1.34 LINK C MSE A 122 N LEU A 123 1555 1555 1.33 LINK C PRO A 126 N MSE A 127 1555 1555 1.34 LINK C MSE A 127 N TRP A 128 1555 1555 1.34 LINK C LYS A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N ASP A 132 1555 1555 1.33 LINK C GLU A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N SER A 174 1555 1555 1.34 LINK C GLY A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N LEU A 190 1555 1555 1.33 LINK C ALA A 228 N MSE A 229 1555 1555 1.33 LINK C MSE A 229 N CYS A 230 1555 1555 1.34 LINK C ILE A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N LEU A 238 1555 1555 1.34 LINK C ASP A 260 N MSE A 261 1555 1555 1.33 LINK C MSE A 261 N ARG A 262 1555 1555 1.34 LINK C ARG A 288 N MSE A 289 1555 1555 1.33 LINK C MSE A 289 N ASP A 290 1555 1555 1.33 CISPEP 1 PRO B 302 PRO B 303 0 13.61 CISPEP 2 PRO A 302 PRO A 303 0 14.35 CRYST1 85.310 85.310 133.313 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011722 0.006768 0.000000 0.00000 SCALE2 0.000000 0.013535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007501 0.00000