HEADER DNA BINDING PROTEIN/INHIBITOR 01-MAY-18 6DAR TITLE DISCOVERY OF POTENT 2-ARYL-6,7-DIHYDRO-5HPYRROLO[ 1,2-A]IMIDAZOLES AS TITLE 2 WDR5 WIN-SITE INHIBITORS USING FRAGMENT-BASED METHODS AND STRUCTURE- TITLE 3 BASED DESIGN COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS WDR5, WIN-SITE, FRAGMENT SCREENING, STRUCTURE-BASED DESIGN, MIXED- KEYWDS 2 LINEAGE LEUKEMIA, DNA BINDING PROTEIN, DNA BINDING PROTEIN-INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.PHAN,S.W.FESIK REVDAT 5 04-OCT-23 6DAR 1 REMARK REVDAT 4 18-DEC-19 6DAR 1 REMARK REVDAT 3 07-NOV-18 6DAR 1 JRNL REVDAT 2 31-OCT-18 6DAR 1 JRNL REVDAT 1 05-SEP-18 6DAR 0 JRNL AUTH F.WANG,K.O.JEON,J.M.SALOVICH,J.D.MACDONALD,J.ALVARADO, JRNL AUTH 2 R.D.GOGLIOTTI,J.PHAN,E.T.OLEJNICZAK,Q.SUN,S.WANG,D.CAMPER, JRNL AUTH 3 J.P.YUH,J.G.SHAW,J.SAI,O.W.ROSSANESE,W.P.TANSEY, JRNL AUTH 4 S.R.STAUFFER,S.W.FESIK JRNL TITL DISCOVERY OF POTENT 2-ARYL-6,7-DIHYDRO-5 H-PYRROLO[1,2- JRNL TITL 2 A]IMIDAZOLES AS WDR5-WIN-SITE INHIBITORS USING JRNL TITL 3 FRAGMENT-BASED METHODS AND STRUCTURE-BASED DESIGN. JRNL REF J. MED. CHEM. V. 61 5623 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29889518 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00375 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1760 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 25724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.8267 - 4.9207 1.00 1392 153 0.1641 0.1767 REMARK 3 2 4.9207 - 3.9082 1.00 1333 157 0.1188 0.1309 REMARK 3 3 3.9082 - 3.4149 1.00 1293 156 0.1278 0.1709 REMARK 3 4 3.4149 - 3.1030 1.00 1315 141 0.1379 0.1606 REMARK 3 5 3.1030 - 2.8808 1.00 1283 154 0.1520 0.1973 REMARK 3 6 2.8808 - 2.7110 1.00 1309 138 0.1592 0.1996 REMARK 3 7 2.7110 - 2.5753 1.00 1303 141 0.1677 0.1892 REMARK 3 8 2.5753 - 2.4633 1.00 1268 153 0.1701 0.2356 REMARK 3 9 2.4633 - 2.3685 1.00 1278 141 0.1617 0.2091 REMARK 3 10 2.3685 - 2.2868 1.00 1304 138 0.1742 0.2163 REMARK 3 11 2.2868 - 2.2153 0.99 1285 135 0.1699 0.2283 REMARK 3 12 2.2153 - 2.1520 1.00 1295 141 0.1664 0.2076 REMARK 3 13 2.1520 - 2.0954 1.00 1262 153 0.1644 0.2001 REMARK 3 14 2.0954 - 2.0442 1.00 1264 131 0.1919 0.2547 REMARK 3 15 2.0442 - 1.9978 0.99 1310 128 0.1855 0.2306 REMARK 3 16 1.9978 - 1.9553 0.98 1251 145 0.2015 0.2525 REMARK 3 17 1.9553 - 1.9162 0.96 1212 132 0.1973 0.2430 REMARK 3 18 1.9162 - 1.8800 0.93 1206 124 0.2236 0.3277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2533 REMARK 3 ANGLE : 1.008 3454 REMARK 3 CHIRALITY : 0.039 383 REMARK 3 PLANARITY : 0.004 434 REMARK 3 DIHEDRAL : 12.137 912 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4339 14.4241 11.7765 REMARK 3 T TENSOR REMARK 3 T11: 0.1185 T22: 0.0911 REMARK 3 T33: 0.0962 T12: -0.0106 REMARK 3 T13: -0.0076 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.7189 L22: 0.3077 REMARK 3 L33: 0.8697 L12: -0.0136 REMARK 3 L13: -0.2560 L23: -0.1943 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: -0.0395 S13: -0.0234 REMARK 3 S21: 0.0171 S22: 0.0025 S23: 0.0121 REMARK 3 S31: 0.0923 S32: 0.0017 S33: 0.0102 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8865 16.8665 -7.9934 REMARK 3 T TENSOR REMARK 3 T11: 0.1222 T22: 0.1374 REMARK 3 T33: 0.0971 T12: 0.0081 REMARK 3 T13: -0.0025 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.4772 L22: 0.6071 REMARK 3 L33: 0.8733 L12: -0.2993 REMARK 3 L13: 0.2357 L23: -0.3352 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: 0.2576 S13: -0.1033 REMARK 3 S21: -0.0211 S22: -0.0129 S23: -0.0464 REMARK 3 S31: 0.1439 S32: 0.0817 S33: -0.0107 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7082 17.3500 -6.1364 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.1857 REMARK 3 T33: 0.1363 T12: -0.0006 REMARK 3 T13: 0.0119 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.7234 L22: 0.5217 REMARK 3 L33: 0.5854 L12: 0.1566 REMARK 3 L13: 0.1341 L23: -0.5085 REMARK 3 S TENSOR REMARK 3 S11: -0.0657 S12: 0.3619 S13: -0.2297 REMARK 3 S21: -0.1809 S22: 0.0556 S23: 0.0576 REMARK 3 S31: 0.0630 S32: -0.1235 S33: 0.0055 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0279 17.7953 10.9921 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.1052 REMARK 3 T33: 0.1110 T12: 0.0087 REMARK 3 T13: 0.0047 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.7551 L22: 0.2543 REMARK 3 L33: 1.1403 L12: 0.0213 REMARK 3 L13: 0.2252 L23: -0.1749 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.0315 S13: -0.0056 REMARK 3 S21: 0.0188 S22: 0.0076 S23: 0.0854 REMARK 3 S31: -0.0454 S32: -0.1461 S33: -0.0138 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25974 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.370 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 10.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.77 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 FOR SHELL : 2.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4Y7R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.0, 0.2 M AMMONIUM REMARK 280 ACETATE, 28% TO 32% PEG3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.23000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.23000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.27500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.73300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.27500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.73300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.23000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.27500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.73300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.23000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.27500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.73300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 PRO A 30 REMARK 465 ASP A 333 REMARK 465 CYS A 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 159 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 635 O HOH A 801 1.99 REMARK 500 O HOH A 889 O HOH A 944 2.03 REMARK 500 O HOH A 707 O HOH A 821 2.05 REMARK 500 O HOH A 671 O HOH A 906 2.07 REMARK 500 O HOH A 671 O HOH A 775 2.10 REMARK 500 O HOH A 811 O HOH A 897 2.12 REMARK 500 OD1 ASP A 212 O HOH A 501 2.13 REMARK 500 OD2 ASP A 212 O HOH A 502 2.17 REMARK 500 O HOH A 824 O HOH A 925 2.18 REMARK 500 OE1 GLN A 204 O HOH A 503 2.19 REMARK 500 O HOH A 527 O HOH A 760 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 899 O HOH A 945 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 80 -62.60 -108.50 REMARK 500 LEU A 234 37.97 -81.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G2J A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 405 DBREF 6DAR A 22 334 UNP P61964 WDR5_HUMAN 22 334 SEQRES 1 A 313 SER ALA THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN SEQRES 2 A 313 TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA SEQRES 3 A 313 VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU SEQRES 4 A 313 ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY SEQRES 5 A 313 ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS SEQRES 6 A 313 LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER SEQRES 7 A 313 ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS SEQRES 8 A 313 ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU SEQRES 9 A 313 LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN SEQRES 10 A 313 PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SEQRES 11 A 313 SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU SEQRES 12 A 313 LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL SEQRES 13 A 313 HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER SEQRES 14 A 313 TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY SEQRES 15 A 313 GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO SEQRES 16 A 313 VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE SEQRES 17 A 313 LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP SEQRES 18 A 313 TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS SEQRES 19 A 313 LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL SEQRES 20 A 313 THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN SEQRES 21 A 313 LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL SEQRES 22 A 313 GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR SEQRES 23 A 313 ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA SEQRES 24 A 313 LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP SEQRES 25 A 313 CYS HET G2J A 401 30 HET SO4 A 402 5 HET SO4 A 403 5 HET DMS A 404 4 HET DMS A 405 4 HETNAM G2J N-(CYCLOPROPYLMETHYL)-N-{[3-(6,7-DIHYDRO-5H-PYRROLO[1, HETNAM 2 G2J 2-A]IMIDAZOL-2-YL)PHENYL]METHYL}-3-METHOXYBENZAMIDE HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 G2J C25 H27 N3 O2 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 DMS 2(C2 H6 O S) FORMUL 7 HOH *453(H2 O) SHEET 1 AA1 4 ALA A 36 LEU A 41 0 SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N ILE A 316 O TRP A 330 SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317 SHEET 1 AA2 4 VAL A 48 PHE A 53 0 SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O ALA A 61 N LYS A 52 SHEET 3 AA2 4 ILE A 69 GLY A 73 -1 O TRP A 72 N LEU A 60 SHEET 4 AA2 4 PHE A 79 ILE A 83 -1 O ILE A 83 N ILE A 69 SHEET 1 AA3 4 ILE A 90 TRP A 95 0 SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O ALA A 105 N SER A 91 SHEET 3 AA3 4 THR A 110 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 AA3 4 LYS A 120 LYS A 126 -1 O LEU A 125 N LEU A 111 SHEET 1 AA4 4 VAL A 132 PHE A 137 0 SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 AA4 4 LYS A 162 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 AA5 4 VAL A 174 PHE A 179 0 SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 AA5 4 CYS A 205 LEU A 209 -1 O LEU A 209 N CYS A 195 SHEET 1 AA6 4 VAL A 217 PHE A 222 0 SHEET 2 AA6 4 TYR A 228 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 AA6 4 LYS A 247 TYR A 252 -1 O TYR A 252 N LEU A 238 SHEET 1 AA7 4 ALA A 264 SER A 267 0 SHEET 2 AA7 4 TRP A 273 GLY A 277 -1 O VAL A 275 N ASN A 265 SHEET 3 AA7 4 LEU A 282 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 AA7 4 ILE A 293 GLN A 298 -1 O VAL A 294 N ILE A 285 SITE 1 AC1 13 SER A 49 SER A 91 ASP A 92 PHE A 133 SITE 2 AC1 13 CYS A 134 PHE A 149 SER A 175 TYR A 191 SITE 3 AC1 13 PHE A 219 TYR A 260 CYS A 261 PHE A 263 SITE 4 AC1 13 ILE A 305 SITE 1 AC2 9 LYS A 78 PHE A 79 ASN A 214 HOH A 543 SITE 2 AC2 9 HOH A 552 HOH A 561 HOH A 610 HOH A 612 SITE 3 AC2 9 HOH A 707 SITE 1 AC3 9 LYS A 221 ASN A 265 ALA A 308 CYS A 309 SITE 2 AC3 9 HOH A 547 HOH A 603 HOH A 643 HOH A 664 SITE 3 AC3 9 HOH A 746 SITE 1 AC4 4 TRP A 59 VAL A 116 HOH A 514 HOH A 686 SITE 1 AC5 5 ARG A 154 CYS A 163 LEU A 164 THR A 166 SITE 2 AC5 5 HOH A 580 CRYST1 78.550 99.466 80.460 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012731 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012429 0.00000