HEADER OXIDOREDUCTASE 02-MAY-18 6DAW TITLE X-RAY CRYSTAL STRUCTURE OF NAPI L-ARGININE DESATURASE BOUND TO FE(II), TITLE 2 L-ARGININE, AND ACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-HEME IRON HYDROXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NAPI; COMPND 5 EC: 1.14.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES LUSITANUS; SOURCE 3 ORGANISM_TAXID: 68232; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DESATURASE, OXYGENASE, METALLOENZYME, DESATURATION, NATURAL PRODUCTS, KEYWDS 2 BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.MITCHELL,N.P.DUNHAM,A.K.BOAL REVDAT 4 13-MAR-24 6DAW 1 LINK REVDAT 3 01-JAN-20 6DAW 1 REMARK REVDAT 2 20-JUN-18 6DAW 1 JRNL REVDAT 1 16-MAY-18 6DAW 0 JRNL AUTH N.P.DUNHAM,W.C.CHANG,A.J.MITCHELL,R.J.MARTINIE,B.ZHANG, JRNL AUTH 2 J.A.BERGMAN,L.J.RAJAKOVICH,B.WANG,A.SILAKOV,C.KREBS, JRNL AUTH 3 A.K.BOAL,J.M.BOLLINGER JRNL TITL TWO DISTINCT MECHANISMS FOR C-C DESATURATION BY IRON(II)- JRNL TITL 2 AND 2-(OXO)GLUTARATE-DEPENDENT OXYGENASES: IMPORTANCE OF JRNL TITL 3 ALPHA-HETEROATOM ASSISTANCE. JRNL REF J. AM. CHEM. SOC. V. 140 7116 2018 JRNL REFN ESSN 1520-5126 JRNL PMID 29708749 JRNL DOI 10.1021/JACS.8B01933 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 38124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2016 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2751 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 287 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : -0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.265 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.114 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5544 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5312 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7542 ; 0.943 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12170 ; 0.701 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 681 ; 5.097 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 272 ;33.679 ;21.912 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 887 ;12.060 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 74 ;15.330 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 837 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6267 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1295 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6DAW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40215 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.90300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM ACETATE, HEPES, PH 7.5, REMARK 280 EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.70267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.35133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.70267 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.35133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B -7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B -2 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 61 -86.58 -94.07 REMARK 500 SER A 130 -13.52 90.23 REMARK 500 ASN A 166 66.21 -163.73 REMARK 500 SER A 216 146.60 -176.39 REMARK 500 ARG A 239 77.72 -153.07 REMARK 500 ASP A 245 81.93 -161.87 REMARK 500 GLU B 61 -82.98 -97.73 REMARK 500 GLN B 117 49.75 37.65 REMARK 500 ASN B 166 69.21 -160.03 REMARK 500 ARG B 239 80.30 -153.39 REMARK 500 ASP B 245 81.23 -158.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 146 NE2 REMARK 620 2 GLU A 148 OE1 103.2 REMARK 620 3 HIS A 293 NE2 95.8 89.7 REMARK 620 4 ACT A 404 O 158.4 89.6 101.5 REMARK 620 5 ACT A 404 OXT 105.0 143.7 109.4 57.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 146 NE2 REMARK 620 2 GLU B 148 OE1 103.1 REMARK 620 3 HIS B 293 NE2 103.4 97.5 REMARK 620 4 ACT B 403 O 101.2 148.2 96.4 REMARK 620 5 ACT B 403 OXT 150.3 91.9 99.8 57.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 404 DBREF 6DAW A 1 334 UNP S4TL40 S4TL40_9ACTN 1 334 DBREF 6DAW B 1 334 UNP S4TL40 S4TL40_9ACTN 1 334 SEQADV 6DAW ALA A -7 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW VAL A -6 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW PRO A -5 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW ARG A -4 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW GLY A -3 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW SER A -2 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW HIS A -1 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW MET A 0 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW ALA B -7 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW VAL B -6 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW PRO B -5 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW ARG B -4 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW GLY B -3 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW SER B -2 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW HIS B -1 UNP S4TL40 EXPRESSION TAG SEQADV 6DAW MET B 0 UNP S4TL40 EXPRESSION TAG SEQRES 1 A 342 ALA VAL PRO ARG GLY SER HIS MET MET ILE ARG TYR VAL SEQRES 2 A 342 ASP LEU ASP ALA ALA GLU GLY ALA ALA LEU ASP GLU LEU SEQRES 3 A 342 THR ARG SER VAL LEU ARG ASP HIS GLY ALA SER SER SER SEQRES 4 A 342 PRO SER LEU LEU ASP ASP LEU SER LEU VAL ALA HIS ARG SEQRES 5 A 342 MET PRO PRO ARG LEU ILE ARG GLU LEU ARG ARG PHE ARG SEQRES 6 A 342 THR ALA GLU GLU ALA SER CYS LEU VAL VAL ARG GLY LEU SEQRES 7 A 342 PRO VAL ASP ASP ARG ARG LEU GLY PRO THR PRO LEU ASP SEQRES 8 A 342 TRP ARG GLU PRO PRO ARG GLU PRO GLU SER GLU VAL HIS SEQRES 9 A 342 GLU VAL PHE LEU THR LEU ALA THR ALA HIS LEU GLY ASP SEQRES 10 A 342 ILE PHE GLY TRP SER THR LEU GLN ASN GLY ARG LEU VAL SEQRES 11 A 342 HIS ASP VAL LEU PRO VAL PRO SER HIS GLU ASN ASP GLN SEQRES 12 A 342 SER GLY HIS GLY THR VAL GLU LEU ALA TRP HIS THR GLU SEQRES 13 A 342 ASP GLY PHE HIS PRO TYR ARG CYS ASP TYR LEU LEU LEU SEQRES 14 A 342 LEU GLY LEU ARG ASN HIS ASP ALA VAL PRO THR GLY VAL SEQRES 15 A 342 ALA GLY VAL ASP GLN VAL VAL LEU SER ASP GLU HIS ARG SEQRES 16 A 342 GLU VAL LEU SER GLN PRO ARG PHE LEU ILE ARG PRO ASP SEQRES 17 A 342 THR GLU HIS LEU ARG HIS ALA ARG THR LEU ALA ALA ASP SEQRES 18 A 342 ARG GLY SER PRO HIS ALA VAL GLN LEU MET GLN ASP GLU SEQRES 19 A 342 PRO GLU PRO CYS ALA VAL LEU PHE GLY HIS PRO ASP ARG SEQRES 20 A 342 PRO TYR LEU ARG ILE ASP PRO ALA PHE MET SER PRO LEU SEQRES 21 A 342 PRO GLY ASP PRO GLU ALA ALA ALA ALA LEU GLU ALA LEU SEQRES 22 A 342 THR ALA GLU LEU GLN ARG ASN LEU THR ASP VAL VAL LEU SEQRES 23 A 342 SER PRO GLY ASP LEU LEU VAL ILE ASP ASN TYR ARG VAL SEQRES 24 A 342 VAL HIS GLY ARG ALA ALA PHE LYS ALA ARG PHE ASP GLY SEQRES 25 A 342 THR ASP ARG TRP LEU LYS LYS ALA VAL VAL THR ARG ASP SEQRES 26 A 342 LEU ARG LYS SER ARG ALA HIS ARG LYS SER ALA ALA GLU SEQRES 27 A 342 ARG VAL LEU LEU SEQRES 1 B 342 ALA VAL PRO ARG GLY SER HIS MET MET ILE ARG TYR VAL SEQRES 2 B 342 ASP LEU ASP ALA ALA GLU GLY ALA ALA LEU ASP GLU LEU SEQRES 3 B 342 THR ARG SER VAL LEU ARG ASP HIS GLY ALA SER SER SER SEQRES 4 B 342 PRO SER LEU LEU ASP ASP LEU SER LEU VAL ALA HIS ARG SEQRES 5 B 342 MET PRO PRO ARG LEU ILE ARG GLU LEU ARG ARG PHE ARG SEQRES 6 B 342 THR ALA GLU GLU ALA SER CYS LEU VAL VAL ARG GLY LEU SEQRES 7 B 342 PRO VAL ASP ASP ARG ARG LEU GLY PRO THR PRO LEU ASP SEQRES 8 B 342 TRP ARG GLU PRO PRO ARG GLU PRO GLU SER GLU VAL HIS SEQRES 9 B 342 GLU VAL PHE LEU THR LEU ALA THR ALA HIS LEU GLY ASP SEQRES 10 B 342 ILE PHE GLY TRP SER THR LEU GLN ASN GLY ARG LEU VAL SEQRES 11 B 342 HIS ASP VAL LEU PRO VAL PRO SER HIS GLU ASN ASP GLN SEQRES 12 B 342 SER GLY HIS GLY THR VAL GLU LEU ALA TRP HIS THR GLU SEQRES 13 B 342 ASP GLY PHE HIS PRO TYR ARG CYS ASP TYR LEU LEU LEU SEQRES 14 B 342 LEU GLY LEU ARG ASN HIS ASP ALA VAL PRO THR GLY VAL SEQRES 15 B 342 ALA GLY VAL ASP GLN VAL VAL LEU SER ASP GLU HIS ARG SEQRES 16 B 342 GLU VAL LEU SER GLN PRO ARG PHE LEU ILE ARG PRO ASP SEQRES 17 B 342 THR GLU HIS LEU ARG HIS ALA ARG THR LEU ALA ALA ASP SEQRES 18 B 342 ARG GLY SER PRO HIS ALA VAL GLN LEU MET GLN ASP GLU SEQRES 19 B 342 PRO GLU PRO CYS ALA VAL LEU PHE GLY HIS PRO ASP ARG SEQRES 20 B 342 PRO TYR LEU ARG ILE ASP PRO ALA PHE MET SER PRO LEU SEQRES 21 B 342 PRO GLY ASP PRO GLU ALA ALA ALA ALA LEU GLU ALA LEU SEQRES 22 B 342 THR ALA GLU LEU GLN ARG ASN LEU THR ASP VAL VAL LEU SEQRES 23 B 342 SER PRO GLY ASP LEU LEU VAL ILE ASP ASN TYR ARG VAL SEQRES 24 B 342 VAL HIS GLY ARG ALA ALA PHE LYS ALA ARG PHE ASP GLY SEQRES 25 B 342 THR ASP ARG TRP LEU LYS LYS ALA VAL VAL THR ARG ASP SEQRES 26 B 342 LEU ARG LYS SER ARG ALA HIS ARG LYS SER ALA ALA GLU SEQRES 27 B 342 ARG VAL LEU LEU HET FE2 A 401 1 HET ARG A 402 12 HET ACT A 403 4 HET ACT A 404 4 HET FE2 B 401 1 HET ARG B 402 12 HET ACT B 403 4 HET ACT B 404 4 HETNAM FE2 FE (II) ION HETNAM ARG ARGININE HETNAM ACT ACETATE ION FORMUL 3 FE2 2(FE 2+) FORMUL 4 ARG 2(C6 H15 N4 O2 1+) FORMUL 5 ACT 4(C2 H3 O2 1-) FORMUL 11 HOH *287(H2 O) HELIX 1 AA1 GLY A -3 MET A 0 5 4 HELIX 2 AA2 ASP A 8 GLY A 27 1 20 HELIX 3 AA3 SER A 31 ASP A 37 1 7 HELIX 4 AA4 ASP A 37 HIS A 43 1 7 HELIX 5 AA5 PRO A 46 GLU A 60 1 15 HELIX 6 AA6 ASP A 73 GLY A 78 1 6 HELIX 7 AA7 GLU A 92 ALA A 105 1 14 HELIX 8 AA8 LEU A 116 ARG A 120 5 5 HELIX 9 AA9 ASP A 178 VAL A 180 5 3 HELIX 10 AB1 SER A 183 SER A 191 1 9 HELIX 11 AB2 ASP A 200 GLY A 215 1 16 HELIX 12 AB3 HIS A 218 GLU A 226 1 9 HELIX 13 AB4 ASP A 245 ALA A 247 5 3 HELIX 14 AB5 ASP A 255 ASN A 272 1 18 HELIX 15 AB6 ASP A 317 ARG A 325 5 9 HELIX 16 AB7 GLY B -3 MET B 0 5 4 HELIX 17 AB8 ASP B 8 GLY B 27 1 20 HELIX 18 AB9 SER B 31 ASP B 37 1 7 HELIX 19 AC1 ASP B 37 HIS B 43 1 7 HELIX 20 AC2 PRO B 46 GLU B 60 1 15 HELIX 21 AC3 ASP B 73 GLY B 78 1 6 HELIX 22 AC4 PRO B 91 HIS B 106 1 16 HELIX 23 AC5 LEU B 116 ARG B 120 5 5 HELIX 24 AC6 ASP B 178 VAL B 180 5 3 HELIX 25 AC7 SER B 183 SER B 191 1 9 HELIX 26 AC8 ASP B 200 ARG B 214 1 15 HELIX 27 AC9 HIS B 218 GLU B 226 1 9 HELIX 28 AD1 ASP B 245 ALA B 247 5 3 HELIX 29 AD2 ASP B 255 ASN B 272 1 18 HELIX 30 AD3 ASP B 317 ARG B 325 5 9 SHEET 1 AA1 6 ILE A 2 ASP A 6 0 SHEET 2 AA1 6 CYS A 64 ARG A 68 1 O VAL A 66 N VAL A 5 SHEET 3 AA1 6 LEU A 283 ASP A 287 -1 O LEU A 283 N VAL A 67 SHEET 4 AA1 6 TYR A 158 ARG A 165 -1 N LEU A 159 O ILE A 286 SHEET 5 AA1 6 TRP A 308 THR A 315 -1 O LYS A 310 N LEU A 162 SHEET 6 AA1 6 HIS A 123 VAL A 125 -1 N HIS A 123 O LYS A 311 SHEET 1 AA2 7 ILE A 2 ASP A 6 0 SHEET 2 AA2 7 CYS A 64 ARG A 68 1 O VAL A 66 N VAL A 5 SHEET 3 AA2 7 LEU A 283 ASP A 287 -1 O LEU A 283 N VAL A 67 SHEET 4 AA2 7 TYR A 158 ARG A 165 -1 N LEU A 159 O ILE A 286 SHEET 5 AA2 7 TRP A 308 THR A 315 -1 O LYS A 310 N LEU A 162 SHEET 6 AA2 7 ASP A 109 TRP A 113 -1 N ASP A 109 O THR A 315 SHEET 7 AA2 7 VAL A 332 LEU A 333 1 O LEU A 333 N GLY A 112 SHEET 1 AA3 4 LEU A 143 HIS A 146 0 SHEET 2 AA3 4 VAL A 291 ARG A 295 -1 O ARG A 295 N LEU A 143 SHEET 3 AA3 4 PRO A 171 GLY A 176 -1 N ALA A 175 O VAL A 292 SHEET 4 AA3 4 THR A 274 VAL A 277 -1 O VAL A 276 N THR A 172 SHEET 1 AA4 2 PHE A 195 ILE A 197 0 SHEET 2 AA4 2 MET A 249 PRO A 251 -1 O SER A 250 N LEU A 196 SHEET 1 AA5 2 LEU A 233 PHE A 234 0 SHEET 2 AA5 2 TYR A 241 LEU A 242 -1 O TYR A 241 N PHE A 234 SHEET 1 AA6 6 ILE B 2 ASP B 6 0 SHEET 2 AA6 6 CYS B 64 ARG B 68 1 O VAL B 66 N VAL B 5 SHEET 3 AA6 6 LEU B 283 ASP B 287 -1 O LEU B 283 N VAL B 67 SHEET 4 AA6 6 TYR B 158 ARG B 165 -1 N LEU B 161 O LEU B 284 SHEET 5 AA6 6 TRP B 308 THR B 315 -1 O TRP B 308 N ARG B 165 SHEET 6 AA6 6 HIS B 123 VAL B 125 -1 N HIS B 123 O LYS B 311 SHEET 1 AA7 7 ILE B 2 ASP B 6 0 SHEET 2 AA7 7 CYS B 64 ARG B 68 1 O VAL B 66 N VAL B 5 SHEET 3 AA7 7 LEU B 283 ASP B 287 -1 O LEU B 283 N VAL B 67 SHEET 4 AA7 7 TYR B 158 ARG B 165 -1 N LEU B 161 O LEU B 284 SHEET 5 AA7 7 TRP B 308 THR B 315 -1 O TRP B 308 N ARG B 165 SHEET 6 AA7 7 ASP B 109 TRP B 113 -1 N ASP B 109 O THR B 315 SHEET 7 AA7 7 VAL B 332 LEU B 333 1 O LEU B 333 N GLY B 112 SHEET 1 AA8 4 LEU B 143 HIS B 146 0 SHEET 2 AA8 4 VAL B 291 ARG B 295 -1 O ARG B 295 N LEU B 143 SHEET 3 AA8 4 PRO B 171 GLY B 176 -1 N ALA B 175 O VAL B 292 SHEET 4 AA8 4 THR B 274 VAL B 277 -1 O VAL B 276 N THR B 172 SHEET 1 AA9 2 PHE B 195 ILE B 197 0 SHEET 2 AA9 2 MET B 249 PRO B 251 -1 O SER B 250 N LEU B 196 SHEET 1 AB1 2 LEU B 233 PHE B 234 0 SHEET 2 AB1 2 TYR B 241 LEU B 242 -1 O TYR B 241 N PHE B 234 LINK NE2 HIS A 146 FE FE2 A 401 1555 1555 2.42 LINK OE1 GLU A 148 FE FE2 A 401 1555 1555 2.02 LINK NE2 HIS A 293 FE FE2 A 401 1555 1555 2.23 LINK FE FE2 A 401 O ACT A 404 1555 1555 2.40 LINK FE FE2 A 401 OXT ACT A 404 1555 1555 2.15 LINK NE2 HIS B 146 FE FE2 B 401 1555 1555 2.40 LINK OE1 GLU B 148 FE FE2 B 401 1555 1555 2.00 LINK NE2 HIS B 293 FE FE2 B 401 1555 1555 2.33 LINK FE FE2 B 401 O ACT B 403 1555 1555 1.91 LINK FE FE2 B 401 OXT ACT B 403 1555 1555 2.51 CISPEP 1 VAL A -6 PRO A -5 0 3.89 CISPEP 2 VAL B -6 PRO B -5 0 4.11 SITE 1 AC1 4 HIS A 146 GLU A 148 HIS A 293 ACT A 404 SITE 1 AC2 12 GLN A 135 SER A 136 GLY A 137 HIS A 146 SITE 2 AC2 12 ASP A 200 ASP A 245 PHE A 248 HOH A 517 SITE 3 AC2 12 HOH A 545 HOH A 562 HOH A 573 HOH A 611 SITE 1 AC3 5 THR A 172 ARG A 295 ARG A 307 LEU A 309 SITE 2 AC3 5 HOH A 536 SITE 1 AC4 7 GLY A 137 LEU A 143 HIS A 146 GLU A 148 SITE 2 AC4 7 HIS A 293 LYS A 311 FE2 A 401 SITE 1 AC5 4 HIS B 146 GLU B 148 HIS B 293 ACT B 403 SITE 1 AC6 13 LEU B 116 GLN B 135 SER B 136 GLY B 137 SITE 2 AC6 13 HIS B 146 ASP B 200 ASP B 245 PHE B 248 SITE 3 AC6 13 HOH B 523 HOH B 539 HOH B 550 HOH B 558 SITE 4 AC6 13 HOH B 582 SITE 1 AC7 7 GLY B 137 LEU B 143 HIS B 146 GLU B 148 SITE 2 AC7 7 HIS B 293 LYS B 311 FE2 B 401 SITE 1 AC8 5 THR B 172 ARG B 295 ARG B 307 LEU B 309 SITE 2 AC8 5 HOH B 567 CRYST1 121.631 121.631 82.054 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008222 0.004747 0.000000 0.00000 SCALE2 0.000000 0.009493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012187 0.00000