HEADER TRANSFERASE 02-MAY-18 6DB1 TITLE 2.0 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF N-TERMINAL LIGAND-BINDING TITLE 2 DOMAIN OF PUTATIVE METHYL-ACCEPTING CHEMOTAXIS PROTEIN FROM TITLE 3 SALMONELLA ENTERICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METHYL-ACCEPTING CHEMOTAXIS PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 34-189; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM STR. LT2; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 STRAIN: LT2 / SGSC1412 / ATCC 700720; SOURCE 6 GENE: STM3152; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, CHEMOTAXIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,O.KIRYUKHINA,S.GRIMSHAW,K.KWON, AUTHOR 2 W.F.ANDERSON,K.J.F.SATCHELL,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 1 16-MAY-18 6DB1 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,O.KIRYUKHINA,S.GRIMSHAW, JRNL AUTH 2 K.KWON,W.F.ANDERSON,K.J.F.SATCHELL,A.JOACHIMIAK, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 2.0 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF N-TERMINAL JRNL TITL 2 LIGAND-BINDING DOMAIN OF PUTATIVE METHYL-ACCEPTING JRNL TITL 3 CHEMOTAXIS PROTEIN FROM SALMONELLA ENTERICA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1036 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1418 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2109 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.82000 REMARK 3 B22 (A**2) : -1.82000 REMARK 3 B33 (A**2) : 5.91000 REMARK 3 B12 (A**2) : -0.91000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.137 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2252 ; 0.008 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 1977 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3052 ; 1.361 ; 1.805 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4672 ; 0.476 ; 1.836 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 292 ; 2.211 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;27.185 ;20.087 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 312 ;11.449 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ; 9.993 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2629 ; 0.023 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 395 ; 0.021 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1141 ; 2.112 ; 3.195 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1142 ; 2.111 ; 3.196 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1442 ; 3.252 ; 4.758 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1443 ; 3.252 ; 4.760 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1110 ; 2.536 ; 3.432 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1109 ; 2.523 ; 3.429 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1611 ; 3.963 ; 5.087 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2626 ; 6.682 ;40.524 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2617 ; 6.678 ;40.405 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6468 2.5423 0.6594 REMARK 3 T TENSOR REMARK 3 T11: 0.2095 T22: 0.1065 REMARK 3 T33: 0.1185 T12: 0.0249 REMARK 3 T13: 0.0209 T23: -0.0794 REMARK 3 L TENSOR REMARK 3 L11: 3.5765 L22: 9.5617 REMARK 3 L33: 2.6055 L12: 0.7621 REMARK 3 L13: -1.4901 L23: -3.1892 REMARK 3 S TENSOR REMARK 3 S11: -0.4767 S12: 0.2369 S13: -0.4660 REMARK 3 S21: -0.0466 S22: 0.3323 S23: -0.4458 REMARK 3 S31: 0.0627 S32: -0.0963 S33: 0.1444 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 35.0855 -20.6601 7.5389 REMARK 3 T TENSOR REMARK 3 T11: 0.3585 T22: 0.1365 REMARK 3 T33: 0.9278 T12: 0.0271 REMARK 3 T13: 0.0719 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 3.2900 L22: 9.1492 REMARK 3 L33: 4.7606 L12: 4.6719 REMARK 3 L13: -0.1825 L23: 3.1284 REMARK 3 S TENSOR REMARK 3 S11: -0.1826 S12: 0.3509 S13: -0.5007 REMARK 3 S21: 0.0826 S22: 0.1115 S23: -0.9732 REMARK 3 S31: 0.5723 S32: -0.5289 S33: 0.0710 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3512 6.3368 6.2934 REMARK 3 T TENSOR REMARK 3 T11: 0.2597 T22: 0.1551 REMARK 3 T33: 0.0192 T12: 0.0971 REMARK 3 T13: -0.0262 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 6.4545 L22: 7.3922 REMARK 3 L33: 3.6273 L12: -2.7974 REMARK 3 L13: 0.9415 L23: -1.7481 REMARK 3 S TENSOR REMARK 3 S11: -0.2917 S12: -0.2795 S13: 0.0053 REMARK 3 S21: 0.5545 S22: 0.4388 S23: -0.1275 REMARK 3 S31: -0.1035 S32: -0.2337 S33: -0.1471 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6371 -10.7681 8.7984 REMARK 3 T TENSOR REMARK 3 T11: 0.2635 T22: 0.2070 REMARK 3 T33: 0.1499 T12: 0.0539 REMARK 3 T13: 0.0771 T23: 0.0909 REMARK 3 L TENSOR REMARK 3 L11: 1.8087 L22: 8.6690 REMARK 3 L33: 2.4881 L12: 3.9377 REMARK 3 L13: -0.9454 L23: -2.4375 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: 0.0617 S13: -0.1778 REMARK 3 S21: -0.0060 S22: 0.2410 S23: -0.2971 REMARK 3 S31: 0.0924 S32: -0.3436 S33: -0.2135 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 21.1530 -17.5699 3.8063 REMARK 3 T TENSOR REMARK 3 T11: 0.5549 T22: 0.1242 REMARK 3 T33: 0.3195 T12: -0.1303 REMARK 3 T13: 0.0639 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 0.4108 L22: 10.0002 REMARK 3 L33: 5.8571 L12: 1.8747 REMARK 3 L13: 1.4365 L23: 7.6316 REMARK 3 S TENSOR REMARK 3 S11: -0.0615 S12: -0.0627 S13: -0.0139 REMARK 3 S21: -1.1703 S22: -0.0293 S23: -0.0079 REMARK 3 S31: -0.8514 S32: -0.0454 S33: 0.0908 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 26.2082 6.7576 -6.1276 REMARK 3 T TENSOR REMARK 3 T11: 0.1922 T22: 0.1938 REMARK 3 T33: 0.0410 T12: -0.0121 REMARK 3 T13: -0.0351 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.1531 L22: 12.5720 REMARK 3 L33: 4.5058 L12: 3.1011 REMARK 3 L13: -2.1699 L23: -4.8725 REMARK 3 S TENSOR REMARK 3 S11: -0.1538 S12: 0.2407 S13: 0.0078 REMARK 3 S21: -0.3861 S22: 0.2066 S23: -0.0923 REMARK 3 S31: 0.1239 S32: -0.5219 S33: -0.0528 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 42 B 61 REMARK 3 ORIGIN FOR THE GROUP (A): 44.4244 13.1846 -7.2182 REMARK 3 T TENSOR REMARK 3 T11: 0.1591 T22: 0.1695 REMARK 3 T33: 0.1344 T12: 0.0003 REMARK 3 T13: -0.0492 T23: -0.1017 REMARK 3 L TENSOR REMARK 3 L11: 9.0916 L22: 8.0674 REMARK 3 L33: 1.9953 L12: 7.0171 REMARK 3 L13: 0.4362 L23: 1.0662 REMARK 3 S TENSOR REMARK 3 S11: -0.0509 S12: 0.3119 S13: 0.1219 REMARK 3 S21: -0.0108 S22: 0.0783 S23: -0.1468 REMARK 3 S31: -0.0526 S32: 0.0123 S33: -0.0274 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 62 B 95 REMARK 3 ORIGIN FOR THE GROUP (A): 28.2136 -5.5460 -15.4505 REMARK 3 T TENSOR REMARK 3 T11: 0.3522 T22: 0.3797 REMARK 3 T33: 0.1663 T12: -0.1104 REMARK 3 T13: -0.0313 T23: -0.1934 REMARK 3 L TENSOR REMARK 3 L11: 6.5539 L22: 5.4853 REMARK 3 L33: 3.8212 L12: 3.0439 REMARK 3 L13: -0.0793 L23: 0.7951 REMARK 3 S TENSOR REMARK 3 S11: -0.0943 S12: 0.4539 S13: -0.6047 REMARK 3 S21: -0.2338 S22: -0.0161 S23: 0.1269 REMARK 3 S31: 0.4522 S32: -0.5987 S33: 0.1104 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 96 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 49.4978 8.6127 -12.6829 REMARK 3 T TENSOR REMARK 3 T11: 0.2116 T22: 0.2906 REMARK 3 T33: 0.2800 T12: -0.0352 REMARK 3 T13: 0.0135 T23: -0.1335 REMARK 3 L TENSOR REMARK 3 L11: 2.1202 L22: 6.3466 REMARK 3 L33: 1.4380 L12: 2.6449 REMARK 3 L13: -1.3292 L23: -1.3868 REMARK 3 S TENSOR REMARK 3 S11: -0.2943 S12: 0.3031 S13: -0.2951 REMARK 3 S21: -0.2938 S22: 0.1081 S23: -0.5218 REMARK 3 S31: 0.0132 S32: 0.0405 S33: 0.1862 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 114 B 138 REMARK 3 ORIGIN FOR THE GROUP (A): 42.8255 -5.0849 -16.2606 REMARK 3 T TENSOR REMARK 3 T11: 0.2093 T22: 0.1383 REMARK 3 T33: 0.1419 T12: -0.0122 REMARK 3 T13: 0.0460 T23: -0.0845 REMARK 3 L TENSOR REMARK 3 L11: 11.9221 L22: 5.0596 REMARK 3 L33: 4.0130 L12: 6.7423 REMARK 3 L13: 5.7169 L23: 4.1657 REMARK 3 S TENSOR REMARK 3 S11: -0.1445 S12: 0.3258 S13: -0.0975 REMARK 3 S21: -0.1735 S22: 0.1984 S23: -0.2684 REMARK 3 S31: 0.1527 S32: 0.1184 S33: -0.0538 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 139 B 149 REMARK 3 ORIGIN FOR THE GROUP (A): 33.0668 -17.8472 -14.6948 REMARK 3 T TENSOR REMARK 3 T11: 0.1430 T22: 0.0946 REMARK 3 T33: 0.1666 T12: -0.1103 REMARK 3 T13: -0.0036 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 6.2093 L22: 8.8607 REMARK 3 L33: 9.5602 L12: 3.8876 REMARK 3 L13: 1.7747 L23: 2.0198 REMARK 3 S TENSOR REMARK 3 S11: 0.2607 S12: -0.2765 S13: -0.8368 REMARK 3 S21: 0.5614 S22: -0.4344 S23: -0.0189 REMARK 3 S31: 0.4028 S32: -0.5857 S33: 0.1737 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 150 B 166 REMARK 3 ORIGIN FOR THE GROUP (A): 44.9495 -5.0198 -6.0306 REMARK 3 T TENSOR REMARK 3 T11: 0.1781 T22: 0.1251 REMARK 3 T33: 0.2529 T12: -0.0367 REMARK 3 T13: -0.0645 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 1.4266 L22: 7.9104 REMARK 3 L33: 9.2115 L12: 2.2592 REMARK 3 L13: 3.6205 L23: 5.5615 REMARK 3 S TENSOR REMARK 3 S11: 0.4362 S12: -0.2091 S13: 0.0223 REMARK 3 S21: 0.9824 S22: -0.5423 S23: -0.7352 REMARK 3 S31: 1.0540 S32: -0.5524 S33: 0.1061 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 167 B 176 REMARK 3 ORIGIN FOR THE GROUP (A): 50.8122 12.5420 2.3656 REMARK 3 T TENSOR REMARK 3 T11: 0.1239 T22: 0.0728 REMARK 3 T33: 0.1371 T12: -0.0243 REMARK 3 T13: -0.1082 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 7.1551 L22: 7.4859 REMARK 3 L33: 5.6535 L12: 6.3501 REMARK 3 L13: 0.9692 L23: 0.5817 REMARK 3 S TENSOR REMARK 3 S11: 0.2323 S12: -0.2030 S13: -0.2782 REMARK 3 S21: 0.5695 S22: -0.1994 S23: -0.6065 REMARK 3 S31: 0.1084 S32: -0.0129 S33: -0.0329 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6DB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : BE REMARK 200 OPTICS : C(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20259 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 28.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.82600 REMARK 200 R SYM FOR SHELL (I) : 0.82600 REMARK 200 FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7.0 MG/ML, 0.01M TRIS HCL (PH REMARK 280 8.3), ATP, MG, SCREEN: PACT (C5), 0.1 PCB BUFFER (PH 8.0), 25% REMARK 280 (W/V) PEG 1500, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.94500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.94500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.94500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 310 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 32 REMARK 465 ASN A 33 REMARK 465 ALA A 34 REMARK 465 LEU A 35 REMARK 465 SER A 36 REMARK 465 GLU A 37 REMARK 465 VAL A 38 REMARK 465 SER A 39 REMARK 465 GLU A 40 REMARK 465 GLY A 41 REMARK 465 ASN A 42 REMARK 465 MSE A 180 REMARK 465 VAL A 181 REMARK 465 ASP A 182 REMARK 465 GLY A 183 REMARK 465 LYS A 184 REMARK 465 THR A 185 REMARK 465 TYR A 186 REMARK 465 THR A 187 REMARK 465 ILE A 188 REMARK 465 ARG A 189 REMARK 465 SER B 32 REMARK 465 ASN B 33 REMARK 465 ALA B 34 REMARK 465 LEU B 35 REMARK 465 SER B 36 REMARK 465 GLU B 37 REMARK 465 VAL B 38 REMARK 465 SER B 39 REMARK 465 GLU B 40 REMARK 465 GLY B 41 REMARK 465 THR B 177 REMARK 465 ARG B 178 REMARK 465 VAL B 179 REMARK 465 MSE B 180 REMARK 465 VAL B 181 REMARK 465 ASP B 182 REMARK 465 GLY B 183 REMARK 465 LYS B 184 REMARK 465 THR B 185 REMARK 465 TYR B 186 REMARK 465 THR B 187 REMARK 465 ILE B 188 REMARK 465 ARG B 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 138 -53.94 -155.80 REMARK 500 SER A 140 -163.54 -126.04 REMARK 500 ALA A 143 -85.02 -114.21 REMARK 500 PRO A 153 -50.02 -29.96 REMARK 500 THR B 150 -70.65 -138.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP01047 RELATED DB: TARGETTRACK DBREF 6DB1 A 34 189 UNP Q8ZM14 Q8ZM14_SALTY 34 189 DBREF 6DB1 B 34 189 UNP Q8ZM14 Q8ZM14_SALTY 34 189 SEQADV 6DB1 SER A 32 UNP Q8ZM14 EXPRESSION TAG SEQADV 6DB1 ASN A 33 UNP Q8ZM14 EXPRESSION TAG SEQADV 6DB1 SER B 32 UNP Q8ZM14 EXPRESSION TAG SEQADV 6DB1 ASN B 33 UNP Q8ZM14 EXPRESSION TAG SEQRES 1 A 158 SER ASN ALA LEU SER GLU VAL SER GLU GLY ASN ASP ILE SEQRES 2 A 158 ASP ARG HIS LEU VAL ARG GLN MSE THR VAL LEU SER GLN SEQRES 3 A 158 GLY ASN ASP GLN TYR PHE ARG PHE VAL THR ARG LEU SER SEQRES 4 A 158 ARG ALA MSE ASP VAL LYS ILE GLY GLY GLY THR PRO ASP SEQRES 5 A 158 PHE ALA PRO ALA ARG GLN SER LEU GLU ASN MSE ARG GLN SEQRES 6 A 158 LYS LEU GLU GLU MSE LYS ALA LEU SER PRO GLY PRO MSE SEQRES 7 A 158 ASN PRO ASP ILE SER ARG GLU VAL LEU SER ASN TRP GLN SEQRES 8 A 158 ALA LEU LEU GLU LYS GLY VAL VAL PRO GLN MSE GLN LEU SEQRES 9 A 158 ALA GLN GLN GLY SER LEU THR ALA TRP SER GLU HIS ALA SEQRES 10 A 158 SER THR VAL THR PRO ALA LEU SER ARG ALA PHE GLY ALA SEQRES 11 A 158 SER ALA GLU ARG PHE SER HIS GLU ALA GLY ALA MSE LEU SEQRES 12 A 158 ASP ASN THR ARG VAL MSE VAL ASP GLY LYS THR TYR THR SEQRES 13 A 158 ILE ARG SEQRES 1 B 158 SER ASN ALA LEU SER GLU VAL SER GLU GLY ASN ASP ILE SEQRES 2 B 158 ASP ARG HIS LEU VAL ARG GLN MSE THR VAL LEU SER GLN SEQRES 3 B 158 GLY ASN ASP GLN TYR PHE ARG PHE VAL THR ARG LEU SER SEQRES 4 B 158 ARG ALA MSE ASP VAL LYS ILE GLY GLY GLY THR PRO ASP SEQRES 5 B 158 PHE ALA PRO ALA ARG GLN SER LEU GLU ASN MSE ARG GLN SEQRES 6 B 158 LYS LEU GLU GLU MSE LYS ALA LEU SER PRO GLY PRO MSE SEQRES 7 B 158 ASN PRO ASP ILE SER ARG GLU VAL LEU SER ASN TRP GLN SEQRES 8 B 158 ALA LEU LEU GLU LYS GLY VAL VAL PRO GLN MSE GLN LEU SEQRES 9 B 158 ALA GLN GLN GLY SER LEU THR ALA TRP SER GLU HIS ALA SEQRES 10 B 158 SER THR VAL THR PRO ALA LEU SER ARG ALA PHE GLY ALA SEQRES 11 B 158 SER ALA GLU ARG PHE SER HIS GLU ALA GLY ALA MSE LEU SEQRES 12 B 158 ASP ASN THR ARG VAL MSE VAL ASP GLY LYS THR TYR THR SEQRES 13 B 158 ILE ARG MODRES 6DB1 MSE A 52 MET MODIFIED RESIDUE MODRES 6DB1 MSE A 73 MET MODIFIED RESIDUE MODRES 6DB1 MSE A 94 MET MODIFIED RESIDUE MODRES 6DB1 MSE A 101 MET MODIFIED RESIDUE MODRES 6DB1 MSE A 109 MET MODIFIED RESIDUE MODRES 6DB1 MSE A 133 MET MODIFIED RESIDUE MODRES 6DB1 MSE A 173 MET MODIFIED RESIDUE MODRES 6DB1 MSE B 52 MET MODIFIED RESIDUE MODRES 6DB1 MSE B 73 MET MODIFIED RESIDUE MODRES 6DB1 MSE B 94 MET MODIFIED RESIDUE MODRES 6DB1 MSE B 101 MET MODIFIED RESIDUE MODRES 6DB1 MSE B 109 MET MODIFIED RESIDUE MODRES 6DB1 MSE B 133 MET MODIFIED RESIDUE MODRES 6DB1 MSE B 173 MET MODIFIED RESIDUE HET MSE A 52 16 HET MSE A 73 8 HET MSE A 94 16 HET MSE A 101 8 HET MSE A 109 16 HET MSE A 133 8 HET MSE A 173 16 HET MSE B 52 8 HET MSE B 73 8 HET MSE B 94 8 HET MSE B 101 8 HET MSE B 109 8 HET MSE B 133 8 HET MSE B 173 8 HET CL B 201 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 CL CL 1- FORMUL 4 HOH *81(H2 O) HELIX 1 AA1 ASP A 43 GLY A 78 1 36 HELIX 2 AA2 PHE A 84 SER A 105 1 22 HELIX 3 AA3 ASN A 110 GLY A 128 1 19 HELIX 4 AA4 GLY A 128 GLN A 137 1 10 HELIX 5 AA5 ALA A 143 ASP A 175 1 33 HELIX 6 AA6 ASP B 43 GLY B 78 1 36 HELIX 7 AA7 PHE B 84 SER B 105 1 22 HELIX 8 AA8 ASN B 110 GLY B 128 1 19 HELIX 9 AA9 GLY B 128 GLY B 139 1 12 HELIX 10 AB1 SER B 140 THR B 150 1 11 HELIX 11 AB2 THR B 150 ASP B 175 1 26 LINK C GLN A 51 N AMSE A 52 1555 1555 1.34 LINK C GLN A 51 N BMSE A 52 1555 1555 1.33 LINK C AMSE A 52 N THR A 53 1555 1555 1.33 LINK C BMSE A 52 N THR A 53 1555 1555 1.33 LINK C ALA A 72 N MSE A 73 1555 1555 1.34 LINK C MSE A 73 N ASP A 74 1555 1555 1.33 LINK C ASN A 93 N AMSE A 94 1555 1555 1.34 LINK C ASN A 93 N BMSE A 94 1555 1555 1.33 LINK C AMSE A 94 N ARG A 95 1555 1555 1.33 LINK C BMSE A 94 N ARG A 95 1555 1555 1.33 LINK C GLU A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N LYS A 102 1555 1555 1.34 LINK C PRO A 108 N AMSE A 109 1555 1555 1.33 LINK C PRO A 108 N BMSE A 109 1555 1555 1.32 LINK C AMSE A 109 N ASN A 110 1555 1555 1.34 LINK C BMSE A 109 N ASN A 110 1555 1555 1.33 LINK C GLN A 132 N MSE A 133 1555 1555 1.33 LINK C MSE A 133 N GLN A 134 1555 1555 1.33 LINK C ALA A 172 N AMSE A 173 1555 1555 1.34 LINK C ALA A 172 N BMSE A 173 1555 1555 1.33 LINK C AMSE A 173 N LEU A 174 1555 1555 1.33 LINK C BMSE A 173 N LEU A 174 1555 1555 1.33 LINK C GLN B 51 N MSE B 52 1555 1555 1.33 LINK C MSE B 52 N THR B 53 1555 1555 1.32 LINK C ALA B 72 N MSE B 73 1555 1555 1.34 LINK C MSE B 73 N ASP B 74 1555 1555 1.34 LINK C ASN B 93 N MSE B 94 1555 1555 1.32 LINK C MSE B 94 N ARG B 95 1555 1555 1.34 LINK C GLU B 100 N MSE B 101 1555 1555 1.33 LINK C MSE B 101 N LYS B 102 1555 1555 1.33 LINK C PRO B 108 N MSE B 109 1555 1555 1.33 LINK C MSE B 109 N ASN B 110 1555 1555 1.34 LINK C GLN B 132 N MSE B 133 1555 1555 1.33 LINK C MSE B 133 N GLN B 134 1555 1555 1.34 LINK C ALA B 172 N MSE B 173 1555 1555 1.33 LINK C MSE B 173 N LEU B 174 1555 1555 1.33 CISPEP 1 SER A 105 PRO A 106 0 -0.25 CISPEP 2 SER B 105 PRO B 106 0 -1.05 SITE 1 AC1 2 SER B 114 ARG B 115 CRYST1 89.226 89.226 65.890 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011207 0.006471 0.000000 0.00000 SCALE2 0.000000 0.012941 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015177 0.00000