HEADER IMMUNE SYSTEM 03-MAY-18 6DBE TITLE CRYSTAL STRUCTURE OF VHH R330 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANOBODY VHH R303; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_TAXID: 9844; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: TG1; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSJF2H KEYWDS NANOBODY VHH LISTERIA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.L.BROOKS,M.TORIDE KING,I.HUH REVDAT 5 04-OCT-23 6DBE 1 REMARK REVDAT 4 01-JAN-20 6DBE 1 REMARK REVDAT 3 12-SEP-18 6DBE 1 JRNL REVDAT 2 25-JUL-18 6DBE 1 JRNL REVDAT 1 18-JUL-18 6DBE 0 JRNL AUTH M.T.KING,I.HUH,A.SHENAI,T.M.BROOKS,C.L.BROOKS JRNL TITL STRUCTURAL BASIS OF VHH-MEDIATED NEUTRALIZATION OF THE JRNL TITL 2 FOOD-BORNE PATHOGENLISTERIA MONOCYTOGENES. JRNL REF J. BIOL. CHEM. V. 293 13626 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29976754 JRNL DOI 10.1074/JBC.RA118.003888 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 24176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3299 - 3.4317 0.90 2485 123 0.1830 0.2094 REMARK 3 2 3.4317 - 2.7240 0.98 2634 123 0.1742 0.2027 REMARK 3 3 2.7240 - 2.3797 0.99 2573 143 0.1875 0.2161 REMARK 3 4 2.3797 - 2.1621 1.00 2594 123 0.1867 0.2447 REMARK 3 5 2.1621 - 2.0071 1.00 2562 144 0.1789 0.2611 REMARK 3 6 2.0071 - 1.8888 1.00 2564 139 0.1786 0.2003 REMARK 3 7 1.8888 - 1.7942 1.00 2564 151 0.1919 0.2434 REMARK 3 8 1.7942 - 1.7161 1.00 2526 155 0.2162 0.2610 REMARK 3 9 1.7161 - 1.6500 0.95 2441 132 0.2485 0.2911 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1830 REMARK 3 ANGLE : 1.152 2484 REMARK 3 CHIRALITY : 0.060 258 REMARK 3 PLANARITY : 0.007 318 REMARK 3 DIHEDRAL : 12.577 1077 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2105 47.0233 10.2189 REMARK 3 T TENSOR REMARK 3 T11: 0.1927 T22: 0.1780 REMARK 3 T33: 0.1961 T12: -0.0084 REMARK 3 T13: -0.0024 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.3508 L22: 0.1616 REMARK 3 L33: 0.4180 L12: -0.2266 REMARK 3 L13: -0.2628 L23: -0.0857 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: -0.0931 S13: 0.0335 REMARK 3 S21: 0.0261 S22: -0.0480 S23: 0.0056 REMARK 3 S31: -0.0170 S32: 0.2771 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4218 53.6276 11.7752 REMARK 3 T TENSOR REMARK 3 T11: 0.2462 T22: 0.3896 REMARK 3 T33: 0.4574 T12: 0.1501 REMARK 3 T13: 0.0510 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.9791 L22: 2.9306 REMARK 3 L33: 3.6788 L12: 1.0708 REMARK 3 L13: 1.4922 L23: 1.2432 REMARK 3 S TENSOR REMARK 3 S11: -0.6203 S12: -0.5954 S13: -0.6799 REMARK 3 S21: -0.2999 S22: -0.6506 S23: 0.0647 REMARK 3 S31: -0.2082 S32: -0.5374 S33: -1.0193 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0960 37.2378 5.1802 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.1403 REMARK 3 T33: 0.1814 T12: 0.0117 REMARK 3 T13: -0.0112 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 1.0006 L22: 0.2094 REMARK 3 L33: 0.3046 L12: 0.5176 REMARK 3 L13: -0.0625 L23: -0.0584 REMARK 3 S TENSOR REMARK 3 S11: -0.1531 S12: 0.1189 S13: 0.0712 REMARK 3 S21: 0.1968 S22: 0.1267 S23: 0.1034 REMARK 3 S31: 0.1687 S32: -0.0970 S33: -0.0218 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8625 43.8006 0.4282 REMARK 3 T TENSOR REMARK 3 T11: 0.1860 T22: 0.1920 REMARK 3 T33: 0.1963 T12: 0.0013 REMARK 3 T13: -0.0418 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 0.1015 L22: 0.6187 REMARK 3 L33: 0.6778 L12: 0.2947 REMARK 3 L13: 0.0303 L23: 0.1119 REMARK 3 S TENSOR REMARK 3 S11: 0.3090 S12: 0.2180 S13: -0.4792 REMARK 3 S21: -0.4541 S22: 0.1063 S23: 0.2555 REMARK 3 S31: 0.4919 S32: 0.2831 S33: 0.0709 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9038 42.9862 6.6464 REMARK 3 T TENSOR REMARK 3 T11: 0.2254 T22: 0.3047 REMARK 3 T33: 0.1920 T12: 0.0327 REMARK 3 T13: -0.0403 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.4979 L22: 1.2038 REMARK 3 L33: 0.1138 L12: -0.5617 REMARK 3 L13: 0.1889 L23: -0.1266 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.1067 S13: -0.3892 REMARK 3 S21: 0.1896 S22: 0.1838 S23: 0.1509 REMARK 3 S31: -0.0675 S32: 0.4488 S33: 0.0015 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7536 47.9876 10.9779 REMARK 3 T TENSOR REMARK 3 T11: 0.2030 T22: 0.1408 REMARK 3 T33: 0.1745 T12: 0.0064 REMARK 3 T13: 0.0074 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.4667 L22: 0.7327 REMARK 3 L33: 0.5346 L12: -0.2481 REMARK 3 L13: -0.2846 L23: 0.1576 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: -0.0320 S13: -0.0212 REMARK 3 S21: 0.1080 S22: 0.0759 S23: 0.2886 REMARK 3 S31: -0.1029 S32: -0.0204 S33: -0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9002 19.9354 10.2955 REMARK 3 T TENSOR REMARK 3 T11: 0.2811 T22: 0.2015 REMARK 3 T33: 0.1853 T12: -0.0546 REMARK 3 T13: -0.0085 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.9195 L22: 0.3808 REMARK 3 L33: -0.0148 L12: -0.1643 REMARK 3 L13: 0.0426 L23: 0.0799 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: 0.0986 S13: -0.0701 REMARK 3 S21: -0.2655 S22: 0.3542 S23: -0.0042 REMARK 3 S31: 0.1381 S32: -0.0718 S33: 0.1931 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4227 30.5474 13.8293 REMARK 3 T TENSOR REMARK 3 T11: 0.2624 T22: 0.2004 REMARK 3 T33: 0.1738 T12: 0.0081 REMARK 3 T13: -0.0068 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.8572 L22: 1.3191 REMARK 3 L33: 0.6204 L12: -0.4711 REMARK 3 L13: -0.3791 L23: 0.6437 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: -0.3510 S13: 0.2218 REMARK 3 S21: 0.4361 S22: 0.0961 S23: -0.3559 REMARK 3 S31: -0.0372 S32: -0.1653 S33: 0.0715 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3924 20.2899 12.4567 REMARK 3 T TENSOR REMARK 3 T11: 0.3329 T22: 0.2808 REMARK 3 T33: 0.5661 T12: 0.0455 REMARK 3 T13: -0.0024 T23: 0.1271 REMARK 3 L TENSOR REMARK 3 L11: 2.0382 L22: 0.3759 REMARK 3 L33: 0.1108 L12: -0.2355 REMARK 3 L13: 0.3948 L23: 0.0488 REMARK 3 S TENSOR REMARK 3 S11: -0.3801 S12: -0.7957 S13: 0.3492 REMARK 3 S21: -0.6226 S22: -0.3291 S23: -0.2069 REMARK 3 S31: 0.0608 S32: 0.3048 S33: -0.1123 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8584 34.6216 5.1251 REMARK 3 T TENSOR REMARK 3 T11: 0.2109 T22: 0.1206 REMARK 3 T33: 0.1630 T12: 0.0142 REMARK 3 T13: 0.0055 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 0.8928 L22: 0.3751 REMARK 3 L33: 0.5937 L12: 0.6005 REMARK 3 L13: -0.2401 L23: -0.2612 REMARK 3 S TENSOR REMARK 3 S11: -0.1821 S12: 0.0785 S13: 0.2490 REMARK 3 S21: 0.1758 S22: 0.2258 S23: -0.3207 REMARK 3 S31: -0.1218 S32: -0.0875 S33: 0.0029 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9942 29.7212 2.1119 REMARK 3 T TENSOR REMARK 3 T11: 0.2952 T22: 0.1868 REMARK 3 T33: 0.1501 T12: 0.0017 REMARK 3 T13: -0.0105 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 0.3964 L22: 0.5031 REMARK 3 L33: 1.0042 L12: 0.4419 REMARK 3 L13: 0.3653 L23: 0.3459 REMARK 3 S TENSOR REMARK 3 S11: -0.0598 S12: 0.2596 S13: 0.3799 REMARK 3 S21: -0.0345 S22: -0.1177 S23: 0.1054 REMARK 3 S31: -0.0006 S32: -0.6683 S33: -0.0493 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8314 31.7681 8.6216 REMARK 3 T TENSOR REMARK 3 T11: 0.2621 T22: 0.3265 REMARK 3 T33: 0.2504 T12: 0.0498 REMARK 3 T13: 0.0026 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 0.3071 L22: 0.0789 REMARK 3 L33: 0.2121 L12: -0.1962 REMARK 3 L13: 0.1299 L23: 0.0248 REMARK 3 S TENSOR REMARK 3 S11: -0.1053 S12: -0.2214 S13: 0.1343 REMARK 3 S21: 0.3080 S22: 0.2120 S23: 0.4165 REMARK 3 S31: 0.0518 S32: -0.5693 S33: 0.0586 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1229 23.6556 8.9961 REMARK 3 T TENSOR REMARK 3 T11: 0.2922 T22: 0.1489 REMARK 3 T33: 0.1732 T12: -0.0069 REMARK 3 T13: -0.0312 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.0444 L22: 1.2198 REMARK 3 L33: 0.4362 L12: 0.1574 REMARK 3 L13: -0.0319 L23: -0.1889 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: -0.0579 S13: 0.0168 REMARK 3 S21: -0.0415 S22: 0.1513 S23: -0.3770 REMARK 3 S31: -0.0058 S32: -0.2072 S33: 0.1411 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9418 35.4922 21.1425 REMARK 3 T TENSOR REMARK 3 T11: 0.3322 T22: 0.2628 REMARK 3 T33: 0.3209 T12: 0.0041 REMARK 3 T13: 0.0110 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.5308 L22: 0.3836 REMARK 3 L33: 0.2182 L12: -0.7422 REMARK 3 L13: -0.5483 L23: 0.3058 REMARK 3 S TENSOR REMARK 3 S11: 0.2545 S12: -0.2618 S13: 0.6753 REMARK 3 S21: -0.0738 S22: -0.2722 S23: -0.3244 REMARK 3 S31: -0.0709 S32: -0.2353 S33: 0.0350 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0399 13.5166 7.8286 REMARK 3 T TENSOR REMARK 3 T11: 0.3382 T22: 0.1457 REMARK 3 T33: 0.2861 T12: -0.0547 REMARK 3 T13: -0.0919 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.9479 L22: 0.0492 REMARK 3 L33: 0.1590 L12: 0.1124 REMARK 3 L13: -0.1636 L23: -0.0364 REMARK 3 S TENSOR REMARK 3 S11: 0.4123 S12: -0.3853 S13: -0.7400 REMARK 3 S21: 0.0241 S22: -0.3058 S23: -0.0664 REMARK 3 S31: 0.0857 S32: 0.0832 S33: 0.1151 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM), FEATURING REMARK 200 INDIRECTLY CRYO-COOLED FIRST REMARK 200 CRYSTAL AND SAGITTALLY FOCUSING REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR: ULTRA REMARK 200 -LOW EXPANSION (ULE) TITANIUM REMARK 200 SILIICATE FLAT MIRROR WITH PT, REMARK 200 UNCOATED, AND PD STRIPS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24176 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6DBA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 24.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 25% PEG 3350, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.50900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.01800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.01800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.50900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 SER A 27 REMARK 465 SER A 118 REMARK 465 GLY A 119 REMARK 465 SER A 120 REMARK 465 GLU A 121 REMARK 465 GLN A 122 REMARK 465 LYS A 123 REMARK 465 LEU A 124 REMARK 465 ILE A 125 REMARK 465 SER A 126 REMARK 465 GLU A 127 REMARK 465 GLU A 128 REMARK 465 ASP A 129 REMARK 465 LEU A 130 REMARK 465 ASN A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 GLN B 1 REMARK 465 THR B 28 REMARK 465 PHE B 29 REMARK 465 LYS B 76 REMARK 465 ASN B 77 REMARK 465 GLY B 119 REMARK 465 SER B 120 REMARK 465 GLU B 121 REMARK 465 GLN B 122 REMARK 465 LYS B 123 REMARK 465 LEU B 124 REMARK 465 ILE B 125 REMARK 465 SER B 126 REMARK 465 GLU B 127 REMARK 465 GLU B 128 REMARK 465 ASP B 129 REMARK 465 LEU B 130 REMARK 465 ASN B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 465 HIS B 135 REMARK 465 HIS B 136 REMARK 465 HIS B 137 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 THR A 28 OG1 CG2 REMARK 470 PHE A 29 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 SER B 27 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 39 O LYS A 43 1.57 REMARK 500 HZ1 LYS A 87 O HOH A 201 1.59 REMARK 500 O HOH B 344 O HOH B 359 2.14 REMARK 500 NE2 GLN A 39 O LYS A 43 2.16 REMARK 500 O HOH A 284 O HOH A 288 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 229 O HOH A 247 4555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 29 85.46 -172.55 REMARK 500 SER A 30 -158.21 -84.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6DBA RELATED DB: PDB REMARK 900 VHH ISOLATED FROM SAME LIBRARY REMARK 900 RELATED ID: 6DBD RELATED DB: PDB REMARK 900 VHH ISOLATED FROM SAME LIBRARY DBREF 6DBE A 1 137 PDB 6DBE 6DBE 1 137 DBREF 6DBE B 1 137 PDB 6DBE 6DBE 1 137 SEQRES 1 A 137 GLN VAL LYS LEU GLU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 137 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 137 SER THR PHE SER ILE TYR THR MET GLY TRP PHE ARG GLN SEQRES 4 A 137 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ASP ILE SER SEQRES 5 A 137 TRP ASN GLY GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 A 137 GLY ARG PHE THR ILE TYR ARG ASP ASN TYR LYS ASN THR SEQRES 7 A 137 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 A 137 ALA VAL TYR TYR CYS ASN ALA ASP ASP LEU MET ILE ASP SEQRES 9 A 137 ARG ASP TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SEQRES 10 A 137 SER GLY SER GLU GLN LYS LEU ILE SER GLU GLU ASP LEU SEQRES 11 A 137 ASN HIS HIS HIS HIS HIS HIS SEQRES 1 B 137 GLN VAL LYS LEU GLU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 137 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 137 SER THR PHE SER ILE TYR THR MET GLY TRP PHE ARG GLN SEQRES 4 B 137 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ASP ILE SER SEQRES 5 B 137 TRP ASN GLY GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 B 137 GLY ARG PHE THR ILE TYR ARG ASP ASN TYR LYS ASN THR SEQRES 7 B 137 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 137 ALA VAL TYR TYR CYS ASN ALA ASP ASP LEU MET ILE ASP SEQRES 9 B 137 ARG ASP TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SEQRES 10 B 137 SER GLY SER GLU GLN LYS LEU ILE SER GLU GLU ASP LEU SEQRES 11 B 137 ASN HIS HIS HIS HIS HIS HIS HET EPE B 201 32 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 EPE C8 H18 N2 O4 S FORMUL 4 HOH *167(H2 O) HELIX 1 AA1 LYS A 87 THR A 91 5 5 HELIX 2 AA2 ASP B 62 LYS B 65 5 4 HELIX 3 AA3 LYS B 87 THR B 91 5 5 SHEET 1 AA1 4 LYS A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O ALA A 23 N GLU A 5 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 AA2 6 GLY A 10 GLN A 13 0 SHEET 2 AA2 6 THR A 112 SER A 117 1 O GLN A 113 N GLY A 10 SHEET 3 AA2 6 ALA A 92 ASP A 100 -1 N TYR A 94 O THR A 112 SHEET 4 AA2 6 TYR A 32 GLN A 39 -1 N PHE A 37 O TYR A 95 SHEET 5 AA2 6 ARG A 45 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O TYR A 59 N ASP A 50 SHEET 1 AA3 4 GLY A 10 GLN A 13 0 SHEET 2 AA3 4 THR A 112 SER A 117 1 O GLN A 113 N GLY A 10 SHEET 3 AA3 4 ALA A 92 ASP A 100 -1 N TYR A 94 O THR A 112 SHEET 4 AA3 4 ARG A 105 TRP A 108 -1 O ARG A 105 N ASP A 100 SHEET 1 AA4 4 LYS B 3 SER B 7 0 SHEET 2 AA4 4 LEU B 18 SER B 25 -1 O SER B 25 N LYS B 3 SHEET 3 AA4 4 VAL B 79 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA4 4 PHE B 68 ARG B 72 -1 N TYR B 71 O TYR B 80 SHEET 1 AA5 6 GLY B 10 GLN B 13 0 SHEET 2 AA5 6 THR B 112 SER B 117 1 O THR B 115 N VAL B 12 SHEET 3 AA5 6 ALA B 92 ASP B 100 -1 N TYR B 94 O THR B 112 SHEET 4 AA5 6 TYR B 32 GLN B 39 -1 N THR B 33 O ASP B 99 SHEET 5 AA5 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA5 6 THR B 58 TYR B 60 -1 O TYR B 59 N ASP B 50 SHEET 1 AA6 4 GLY B 10 GLN B 13 0 SHEET 2 AA6 4 THR B 112 SER B 117 1 O THR B 115 N VAL B 12 SHEET 3 AA6 4 ALA B 92 ASP B 100 -1 N TYR B 94 O THR B 112 SHEET 4 AA6 4 ARG B 105 TRP B 108 -1 O ARG B 105 N ASP B 100 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.00 SSBOND 2 CYS B 22 CYS B 96 1555 1555 2.07 SITE 1 AC1 8 PHE A 47 ASP A 50 THR B 33 ASP B 50 SITE 2 AC1 8 SER B 52 TYR B 59 HOH B 301 HOH B 319 CRYST1 58.615 58.615 100.527 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017060 0.009850 0.000000 0.00000 SCALE2 0.000000 0.019700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009948 0.00000