HEADER HYDROLASE/HYDROLASE INHIBITOR 08-MAY-18 6DCZ TITLE THE N-TERMINAL DOMAIN OF PA ENDONUCLEASE FROM THE INFLUENZA H1N1 VIRUS TITLE 2 IN COMPLEX WITH 3-HYDROXY-4-OXO-4H-PYRAN-2-CARBOXYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 1-198); COMPND 5 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 641501; SOURCE 4 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, ENDONUCLEASE, INFLUENZA, PA DOMAIN, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.L.DICK,C.N.MORRISON,S.M.COHEN REVDAT 4 11-OCT-23 6DCZ 1 LINK REVDAT 3 01-JAN-20 6DCZ 1 REMARK REVDAT 2 05-DEC-18 6DCZ 1 JRNL REVDAT 1 07-NOV-18 6DCZ 0 JRNL AUTH C.V.CREDILLE,B.L.DICK,C.N.MORRISON,R.W.STOKES,R.N.ADAMEK, JRNL AUTH 2 N.C.WU,I.A.WILSON,S.M.COHEN JRNL TITL STRUCTURE-ACTIVITY RELATIONSHIPS IN METAL-BINDING JRNL TITL 2 PHARMACOPHORES FOR INFLUENZA ENDONUCLEASE. JRNL REF J. MED. CHEM. V. 61 10206 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 30351002 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01363 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 4332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 473 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 310 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1496 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 1.51000 REMARK 3 B12 (A**2) : -0.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.495 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.336 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.700 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.850 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1537 ; 0.008 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 1370 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2062 ; 1.277 ; 1.672 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3215 ; 0.844 ; 1.637 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 178 ; 6.941 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;35.870 ;21.183 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 291 ;19.418 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;22.421 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 201 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1705 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 300 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 718 ; 2.870 ; 4.366 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 717 ; 2.858 ; 4.361 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 894 ; 4.653 ; 6.530 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 895 ; 4.651 ; 6.536 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 819 ; 3.003 ; 4.632 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 816 ; 3.008 ; 4.636 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1167 ; 4.769 ; 6.812 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1793 ; 7.287 ;49.126 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1792 ; 7.288 ;49.133 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6DCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234404. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4826 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.890 REMARK 200 RESOLUTION RANGE LOW (A) : 30.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.48500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4AWM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG4000, 100 MM TRIS, PH 8.0, 200 REMARK 280 MM SODIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 308K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.86667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.43333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.86667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.43333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.86667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 40.43333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 80.86667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.43333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 MET A -1 REMARK 465 SER A 65 REMARK 465 GLY A 66 REMARK 465 ASP A 67 REMARK 465 PRO A 68 REMARK 465 ASN A 69 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 51 79.39 -68.84 REMARK 500 LEU A 71 -40.81 -164.13 REMARK 500 HIS A 74 71.30 66.01 REMARK 500 THR A 98 -35.14 -144.78 REMARK 500 ARG A 125 -152.00 -97.99 REMARK 500 LYS A 142 33.59 -91.22 REMARK 500 ALA A 159 41.59 39.07 REMARK 500 THR A 162 -52.77 70.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 98.8 REMARK 620 3 GLU A 119 OE2 169.7 90.6 REMARK 620 4 ILE A 120 O 81.6 94.0 93.6 REMARK 620 5 G5Y A 301 OAD 80.4 177.7 90.4 88.0 REMARK 620 6 G5Y A 301 OAJ 98.2 101.2 84.0 164.7 76.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 90.2 REMARK 620 3 G5Y A 301 OAI 90.9 177.9 REMARK 620 4 G5Y A 301 OAJ 105.3 90.6 87.4 REMARK 620 5 HOH A 401 O 92.6 69.6 112.1 153.5 REMARK 620 6 HOH A 402 O 168.5 86.3 92.8 85.7 76.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G5Y A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 303 DBREF 6DCZ A 1 198 UNP C3W5S0 C3W5S0_I09A0 1 198 SEQADV 6DCZ MET A -5 UNP C3W5S0 EXPRESSION TAG SEQADV 6DCZ GLY A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 6DCZ SER A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 6DCZ GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 6DCZ MET A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 6DCZ ALA A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 6DCZ GLY A 52 UNP C3W5S0 HIS 52 CONFLICT SEQADV 6DCZ A UNP C3W5S0 PHE 53 DELETION SEQADV 6DCZ A UNP C3W5S0 ILE 54 DELETION SEQADV 6DCZ A UNP C3W5S0 ASP 55 DELETION SEQADV 6DCZ A UNP C3W5S0 GLU 56 DELETION SEQADV 6DCZ A UNP C3W5S0 ARG 57 DELETION SEQADV 6DCZ A UNP C3W5S0 GLY 58 DELETION SEQADV 6DCZ A UNP C3W5S0 GLU 59 DELETION SEQADV 6DCZ A UNP C3W5S0 SER 60 DELETION SEQADV 6DCZ A UNP C3W5S0 ILE 61 DELETION SEQADV 6DCZ A UNP C3W5S0 ILE 62 DELETION SEQADV 6DCZ A UNP C3W5S0 VAL 63 DELETION SEQADV 6DCZ A UNP C3W5S0 GLU 64 DELETION SEQRES 1 A 192 MET GLY SER GLY MET ALA MET GLU ASP PHE VAL ARG GLN SEQRES 2 A 192 CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS ALA SEQRES 3 A 192 MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR ASN SEQRES 4 A 192 LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS PHE SEQRES 5 A 192 MET TYR SER ASP PHE GLY SER GLY ASP PRO ASN ALA LEU SEQRES 6 A 192 LEU LYS HIS ARG PHE GLU ILE ILE GLU GLY ARG ASP ARG SEQRES 7 A 192 ILE MET ALA TRP THR VAL VAL ASN SER ILE CYS ASN THR SEQRES 8 A 192 THR GLY VAL GLU LYS PRO LYS PHE LEU PRO ASP LEU TYR SEQRES 9 A 192 ASP TYR LYS GLU ASN ARG PHE ILE GLU ILE GLY VAL THR SEQRES 10 A 192 ARG ARG GLU VAL HIS ILE TYR TYR LEU GLU LYS ALA ASN SEQRES 11 A 192 LYS ILE LYS SER GLU LYS THR HIS ILE HIS ILE PHE SER SEQRES 12 A 192 PHE THR GLY GLU GLU MET ALA THR LYS ALA ASP TYR THR SEQRES 13 A 192 LEU ASP GLU GLU SER ARG ALA ARG ILE LYS THR ARG LEU SEQRES 14 A 192 PHE THR ILE ARG GLN GLU MET ALA SER ARG SER LEU TRP SEQRES 15 A 192 ASP SER PHE ARG GLN SER GLU ARG GLY GLU HET G5Y A 301 11 HET MN A 302 1 HET MN A 303 1 HETNAM G5Y 3-HYDROXY-4-OXO-4H-PYRAN-2-CARBOXYLIC ACID HETNAM MN MANGANESE (II) ION FORMUL 2 G5Y C6 H4 O5 FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *4(H2 O) HELIX 1 AA1 ALA A 0 PHE A 9 1 10 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 PHE A 51 1 21 HELIX 4 AA4 ASP A 83 THR A 97 1 15 HELIX 5 AA5 GLU A 126 ILE A 138 1 13 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ILE A 118 N LEU A 109 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O PHE A 148 N GLY A 121 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 303 1555 1555 2.17 LINK OE1 GLU A 80 MN MN A 302 1555 1555 1.88 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.08 LINK OD2 ASP A 108 MN MN A 303 1555 1555 1.98 LINK OE2 GLU A 119 MN MN A 303 1555 1555 2.13 LINK O ILE A 120 MN MN A 303 1555 1555 2.15 LINK OAI G5Y A 301 MN MN A 302 1555 1555 2.01 LINK OAJ G5Y A 301 MN MN A 302 1555 1555 1.92 LINK OAD G5Y A 301 MN MN A 303 1555 1555 1.99 LINK OAJ G5Y A 301 MN MN A 303 1555 1555 2.30 LINK MN MN A 302 O HOH A 401 1555 1555 2.25 LINK MN MN A 302 O HOH A 402 1555 1555 2.17 SITE 1 AC1 9 HIS A 41 GLU A 80 ASP A 108 GLU A 119 SITE 2 AC1 9 ILE A 120 LYS A 134 MN A 302 MN A 303 SITE 3 AC1 9 HOH A 402 SITE 1 AC2 6 GLU A 80 ASP A 108 G5Y A 301 MN A 303 SITE 2 AC2 6 HOH A 401 HOH A 402 SITE 1 AC3 6 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC3 6 G5Y A 301 MN A 302 CRYST1 75.840 75.840 121.300 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013186 0.007613 0.000000 0.00000 SCALE2 0.000000 0.015225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008244 0.00000