HEADER HYDROLASE 08-MAY-18 6DD0 TITLE CRYSTAL STRUCTURE OF VIM-2 COMPLEXED WITH COMPOUND 8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE CLASS B VIM-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BLAVIM-2,METALLO BETA-LACTAMASE,METALLO-BETA LACTAMASE COMPND 5 PROTEIN,METALLO-BETA-LACTAMASE VIM-2,VIM-2,VIM-2 BETA-LACTAMASE,VIM-2 COMPND 6 CLASS B METALLO B-LACTAMASE,VIM-2 METALLO BETA-LACTAMASE,VIM-2 TYPE COMPND 7 METALLO-BETA-LACTAMASE; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM-2, BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM2, VIM-2, SOURCE 5 VIM-2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BETA-LACTAMASE, CARBAPENEMASE, PHOSPHONATE, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.A.PEMBERTON,Y.CHEN REVDAT 5 11-OCT-23 6DD0 1 LINK REVDAT 4 18-DEC-19 6DD0 1 REMARK REVDAT 3 09-OCT-19 6DD0 1 JRNL REVDAT 2 02-OCT-19 6DD0 1 JRNL REVDAT 1 08-MAY-19 6DD0 0 JRNL AUTH O.A.PEMBERTON,P.JAISHANKAR,A.AKHTAR,J.L.ADAMS,L.N.SHAW, JRNL AUTH 2 A.R.RENSLO,Y.CHEN JRNL TITL HETEROARYL PHOSPHONATES AS NONCOVALENT INHIBITORS OF BOTH JRNL TITL 2 SERINE- AND METALLOCARBAPENEMASES. JRNL REF J.MED.CHEM. V. 62 8480 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31483651 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00728 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.590 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 65884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 6299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.3927 - 4.6560 0.99 4159 142 0.1688 0.2051 REMARK 3 2 4.6560 - 3.6974 0.99 4129 191 0.1385 0.1657 REMARK 3 3 3.6974 - 3.2306 0.99 3994 306 0.1433 0.1672 REMARK 3 4 3.2306 - 2.9355 0.99 4106 194 0.1583 0.2214 REMARK 3 5 2.9355 - 2.7252 0.99 4133 176 0.1586 0.1796 REMARK 3 6 2.7252 - 2.5646 0.99 4021 304 0.1511 0.1912 REMARK 3 7 2.5646 - 2.4362 0.99 4090 206 0.1595 0.2088 REMARK 3 8 2.4362 - 2.3302 0.99 4051 210 0.1646 0.2283 REMARK 3 9 2.3302 - 2.2405 0.99 4083 189 0.1689 0.2304 REMARK 3 10 2.2405 - 2.1632 0.99 4045 272 0.1690 0.2217 REMARK 3 11 2.1632 - 2.0956 0.99 4042 224 0.1684 0.2180 REMARK 3 12 2.0956 - 2.0357 0.99 4131 220 0.1771 0.2305 REMARK 3 13 2.0357 - 1.9821 0.99 4115 159 0.1751 0.2185 REMARK 3 14 1.9821 - 1.9338 0.99 4005 271 0.1878 0.2289 REMARK 3 15 1.9338 - 1.8898 0.99 4104 228 0.1951 0.2532 REMARK 3 16 1.8898 - 1.8496 0.99 4061 189 0.1967 0.2626 REMARK 3 17 1.8496 - 1.8126 0.99 4084 219 0.2082 0.2480 REMARK 3 18 1.8126 - 1.7784 0.99 4065 231 0.2089 0.2658 REMARK 3 19 1.7784 - 1.7466 0.99 4005 253 0.2170 0.2756 REMARK 3 20 1.7466 - 1.7170 0.99 4066 239 0.2203 0.2745 REMARK 3 21 1.7170 - 1.6893 0.99 4121 146 0.2293 0.2750 REMARK 3 22 1.6893 - 1.6634 0.99 4027 202 0.2323 0.2503 REMARK 3 23 1.6634 - 1.6389 0.98 4114 179 0.2373 0.2979 REMARK 3 24 1.6389 - 1.6158 0.98 4031 211 0.2414 0.2837 REMARK 3 25 1.6158 - 1.5940 0.98 3994 234 0.2421 0.3213 REMARK 3 26 1.5940 - 1.5733 0.98 4079 196 0.2594 0.3379 REMARK 3 27 1.5733 - 1.5536 0.98 4036 160 0.2596 0.2761 REMARK 3 28 1.5536 - 1.5349 0.98 4100 187 0.2524 0.2999 REMARK 3 29 1.5349 - 1.5170 0.97 4049 146 0.2675 0.3357 REMARK 3 30 1.5170 - 1.5000 0.98 4023 215 0.2695 0.3114 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65885 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 33.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.28100 REMARK 200 R SYM (I) : 0.28100 REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 1.32000 REMARK 200 R SYM FOR SHELL (I) : 0.11600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 1KO3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 20% (W/V) PEG REMARK 280 3350, 1 MM TCEP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.31500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.56500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.31500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.56500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 PRO A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 ARG A 296 REMARK 465 SER A 297 REMARK 465 VAL A 298 REMARK 465 VAL A 299 REMARK 465 GLU A 300 REMARK 465 GLY B 23 REMARK 465 PRO B 24 REMARK 465 VAL B 25 REMARK 465 ASP B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 ARG B 296 REMARK 465 SER B 297 REMARK 465 VAL B 298 REMARK 465 VAL B 299 REMARK 465 GLU B 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 632 O HOH A 681 1.94 REMARK 500 O HOH B 696 O HOH B 716 2.09 REMARK 500 NE2 GLN B 103 O HOH B 501 2.11 REMARK 500 O HOH B 631 O HOH B 711 2.12 REMARK 500 O HOH B 629 O HOH B 664 2.14 REMARK 500 OG SER B 141 O HOH B 502 2.16 REMARK 500 O HOH A 616 O HOH A 761 2.16 REMARK 500 O HOH B 731 O HOH B 768 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 61 114.75 -163.55 REMARK 500 ASP A 84 145.75 75.43 REMARK 500 TRP A 87 63.97 67.98 REMARK 500 ALA A 195 -105.02 -150.47 REMARK 500 ASP B 84 148.97 72.79 REMARK 500 TRP B 87 67.13 66.71 REMARK 500 ALA B 195 -104.18 -151.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 776 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 785 DISTANCE = 5.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 100.0 REMARK 620 3 HIS A 196 NE2 98.4 116.8 REMARK 620 4 P9T A 403 O07 125.8 112.7 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 221 SG 114.1 REMARK 620 3 HIS A 263 NE2 95.6 110.8 REMARK 620 4 P9T A 403 O08 121.2 117.1 91.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 HIS A 285 ND1 45.0 REMARK 620 3 ACT A 404 O 42.3 2.6 REMARK 620 4 ACT A 404 OXT 44.8 2.0 3.1 REMARK 620 5 ACT A 405 OXT 43.4 3.8 3.6 5.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 98.5 REMARK 620 3 HIS B 196 NE2 102.7 113.9 REMARK 620 4 P9T B 403 O09 122.1 105.2 113.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD2 REMARK 620 2 CYS B 221 SG 113.1 REMARK 620 3 HIS B 263 NE2 94.2 113.5 REMARK 620 4 P9T B 403 O08 114.0 113.8 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 170 NE2 REMARK 620 2 HIS B 285 ND1 46.8 REMARK 620 3 ACT B 404 O 45.0 4.0 REMARK 620 4 ACT B 405 O 46.8 2.2 6.1 REMARK 620 5 ACT B 405 OXT 44.3 2.5 3.8 3.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P9T A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P9T B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 406 DBREF 6DD0 A 25 300 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 DBREF 6DD0 B 25 300 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 SEQADV 6DD0 GLY A 23 UNP Q9K2N0 EXPRESSION TAG SEQADV 6DD0 PRO A 24 UNP Q9K2N0 EXPRESSION TAG SEQADV 6DD0 GLY B 23 UNP Q9K2N0 EXPRESSION TAG SEQADV 6DD0 PRO B 24 UNP Q9K2N0 EXPRESSION TAG SEQRES 1 A 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 A 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 A 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 A 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 A 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 A 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 A 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 A 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 A 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 A 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 A 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 A 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 A 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 A 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 A 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 A 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 A 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 A 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 A 242 HIS THR ASN ARG SER VAL VAL GLU SEQRES 1 B 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 B 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 B 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 B 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 B 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 B 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 B 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 B 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 B 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 B 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 B 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 B 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 B 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 B 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 B 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 B 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 B 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 B 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 B 242 HIS THR ASN ARG SER VAL VAL GLU HET ZN A 401 1 HET ZN A 402 1 HET P9T A 403 18 HET ACT A 404 4 HET ACT A 405 4 HET ZN A 406 1 HET ZN B 401 1 HET ZN B 402 1 HET P9T B 403 18 HET ACT B 404 4 HET ACT B 405 4 HET ZN B 406 1 HETNAM ZN ZINC ION HETNAM P9T [(5,7-DIFLUORO-2-OXO-2H-1-BENZOPYRAN-4-YL) HETNAM 2 P9T METHYL]PHOSPHONIC ACID HETNAM ACT ACETATE ION FORMUL 3 ZN 6(ZN 2+) FORMUL 5 P9T 2(C10 H7 F2 O5 P) FORMUL 6 ACT 4(C2 H3 O2 1-) FORMUL 15 HOH *561(H2 O) HELIX 1 AA1 THR A 33 ILE A 37 5 5 HELIX 2 AA2 GLY A 88 ILE A 104 1 16 HELIX 3 AA3 HIS A 118 GLY A 123 1 6 HELIX 4 AA4 GLY A 124 ALA A 131 1 8 HELIX 5 AA5 SER A 139 GLY A 150 1 12 HELIX 6 AA6 CYS A 221 ILE A 223 5 3 HELIX 7 AA7 GLU A 241 TYR A 253 1 13 HELIX 8 AA8 LEU A 280 ASN A 295 1 16 HELIX 9 AA9 THR B 33 ILE B 37 5 5 HELIX 10 AB1 GLY B 88 ILE B 104 1 16 HELIX 11 AB2 HIS B 118 GLY B 123 1 6 HELIX 12 AB3 GLY B 124 ALA B 131 1 8 HELIX 13 AB4 SER B 139 GLY B 150 1 12 HELIX 14 AB5 CYS B 221 ILE B 223 5 3 HELIX 15 AB6 GLU B 241 TYR B 253 1 13 HELIX 16 AB7 LEU B 280 ASN B 295 1 16 SHEET 1 AA1 7 ARG A 43 ALA A 49 0 SHEET 2 AA1 7 VAL A 52 PHE A 61 -1 O ILE A 56 N ARG A 43 SHEET 3 AA1 7 ALA A 64 ASP A 76 -1 O ILE A 73 N TRP A 53 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA1 7 VAL A 109 VAL A 113 1 O ARG A 111 N LEU A 82 SHEET 6 AA1 7 ALA A 135 ALA A 138 1 O TYR A 137 N ALA A 112 SHEET 7 AA1 7 HIS A 170 SER A 171 1 O HIS A 170 N THR A 136 SHEET 1 AA2 5 ASP A 180 PHE A 184 0 SHEET 2 AA2 5 VAL A 187 TYR A 191 -1 O LEU A 189 N VAL A 182 SHEET 3 AA2 5 VAL A 202 VAL A 205 -1 O TYR A 204 N GLU A 188 SHEET 4 AA2 5 VAL A 216 GLY A 220 -1 O TYR A 218 N VAL A 203 SHEET 5 AA2 5 PHE A 258 PRO A 261 1 O PHE A 258 N LEU A 217 SHEET 1 AA3 7 ARG B 43 ALA B 49 0 SHEET 2 AA3 7 VAL B 52 PHE B 61 -1 O ILE B 56 N ARG B 43 SHEET 3 AA3 7 ALA B 64 ASP B 76 -1 O ILE B 73 N TRP B 53 SHEET 4 AA3 7 GLU B 79 ILE B 83 -1 O GLU B 79 N ASP B 76 SHEET 5 AA3 7 VAL B 109 VAL B 113 1 O ARG B 111 N LEU B 82 SHEET 6 AA3 7 ALA B 135 ALA B 138 1 O TYR B 137 N ALA B 112 SHEET 7 AA3 7 HIS B 170 SER B 171 1 O HIS B 170 N THR B 136 SHEET 1 AA4 5 ALA B 181 PHE B 184 0 SHEET 2 AA4 5 VAL B 187 PHE B 190 -1 O LEU B 189 N VAL B 182 SHEET 3 AA4 5 VAL B 202 VAL B 205 -1 O TYR B 204 N GLU B 188 SHEET 4 AA4 5 VAL B 216 GLY B 220 -1 O TYR B 218 N VAL B 203 SHEET 5 AA4 5 PHE B 258 PRO B 261 1 O PHE B 258 N LEU B 217 LINK NE2 HIS A 116 ZN ZN A 401 1555 1555 2.13 LINK ND1 HIS A 118 ZN ZN A 401 1555 1555 2.03 LINK OD2 ASP A 120 ZN ZN A 402 1555 1555 1.98 LINK NE2 HIS A 170 ZN ZN A 406 1555 4455 2.01 LINK NE2 HIS A 196 ZN ZN A 401 1555 1555 2.05 LINK SG CYS A 221 ZN ZN A 402 1555 1555 2.23 LINK NE2 HIS A 263 ZN ZN A 402 1555 1555 2.03 LINK ND1 HIS A 285 ZN ZN A 406 1555 1555 2.05 LINK ZN ZN A 401 O07 P9T A 403 1555 1555 2.20 LINK ZN ZN A 402 O08 P9T A 403 1555 1555 1.89 LINK O ACT A 404 ZN ZN A 406 1555 1555 1.93 LINK OXT ACT A 404 ZN ZN A 406 1555 1555 2.50 LINK OXT ACT A 405 ZN ZN A 406 1555 1555 1.85 LINK NE2 HIS B 116 ZN ZN B 401 1555 1555 2.10 LINK ND1 HIS B 118 ZN ZN B 401 1555 1555 2.02 LINK OD2 ASP B 120 ZN ZN B 402 1555 1555 2.01 LINK NE2 HIS B 170 ZN ZN B 406 1555 4446 2.04 LINK NE2 HIS B 196 ZN ZN B 401 1555 1555 2.03 LINK SG CYS B 221 ZN ZN B 402 1555 1555 2.27 LINK NE2 HIS B 263 ZN ZN B 402 1555 1555 1.99 LINK ND1 HIS B 285 ZN ZN B 406 1555 1555 2.11 LINK ZN ZN B 401 O09 P9T B 403 1555 1555 2.05 LINK ZN ZN B 402 O08 P9T B 403 1555 1555 1.78 LINK O ACT B 404 ZN ZN B 406 1555 1555 2.00 LINK O ACT B 405 ZN ZN B 406 1555 1555 2.66 LINK OXT ACT B 405 ZN ZN B 406 1555 1555 1.97 SITE 1 AC1 4 HIS A 116 HIS A 118 HIS A 196 P9T A 403 SITE 1 AC2 4 ASP A 120 CYS A 221 HIS A 263 P9T A 403 SITE 1 AC3 11 PHE A 61 HIS A 118 ASP A 120 HIS A 196 SITE 2 AC3 11 CYS A 221 ARG A 228 ASN A 233 HIS A 263 SITE 3 AC3 11 ZN A 401 ZN A 402 HOH A 511 SITE 1 AC4 7 ALA A 135 HIS A 170 HIS A 285 ASN A 288 SITE 2 AC4 7 ACT A 405 ZN A 406 HOH A 502 SITE 1 AC5 9 ALA A 135 THR A 136 THR A 169 HIS A 170 SITE 2 AC5 9 ASP A 281 HIS A 285 ACT A 404 ZN A 406 SITE 3 AC5 9 HOH A 552 SITE 1 AC6 4 HIS A 170 HIS A 285 ACT A 404 ACT A 405 SITE 1 AC7 4 HIS B 116 HIS B 118 HIS B 196 P9T B 403 SITE 1 AC8 4 ASP B 120 CYS B 221 HIS B 263 P9T B 403 SITE 1 AC9 14 PHE B 61 TYR B 67 HIS B 116 HIS B 118 SITE 2 AC9 14 ASP B 120 HIS B 196 CYS B 221 ARG B 228 SITE 3 AC9 14 ASN B 233 HIS B 263 ZN B 401 ZN B 402 SITE 4 AC9 14 HOH B 674 HOH B 709 SITE 1 AD1 9 ALA B 135 THR B 136 THR B 169 HIS B 170 SITE 2 AD1 9 HIS B 285 ASN B 288 ACT B 405 ZN B 406 SITE 3 AD1 9 HOH B 534 SITE 1 AD2 7 ALA B 135 HIS B 170 HIS B 285 ASN B 288 SITE 2 AD2 7 ACT B 404 ZN B 406 HOH B 525 SITE 1 AD3 4 HIS B 170 HIS B 285 ACT B 404 ACT B 405 CRYST1 102.630 79.130 67.790 90.00 130.50 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009744 0.000000 0.008322 0.00000 SCALE2 0.000000 0.012637 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019399 0.00000