HEADER HYDROLASE 09-MAY-18 6DD3 TITLE CRYSTAL STRUCTURE OF THE DOUBLE MUTANT (D52N/D407A) OF NT5C2-537X IN TITLE 2 THE ACTIVE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOLIC PURINE 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-536; COMPND 5 SYNONYM: CYTOSOLIC 5'-NUCLEOTIDASE II; COMPND 6 EC: 3.1.3.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5C2, NT5B, NT5CP, PNT5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL: ROSETTA 2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLOC_NT5C2 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FOROUHAR,C.L.DIECK,G.TZONEVA,Z.CARPENTER,A.AMBESI-IMPIOMBATO, AUTHOR 2 M.SANCHEZ-MARTIN,R.KIRSCHNER-SCHWABE,S.LEW,J.SEETHARAMAN, AUTHOR 3 A.A.FERRANDO,L.TONG REVDAT 4 13-MAR-24 6DD3 1 REMARK REVDAT 3 04-DEC-19 6DD3 1 REMARK REVDAT 2 25-JUL-18 6DD3 1 JRNL REVDAT 1 04-JUL-18 6DD3 0 JRNL AUTH C.L.DIECK,G.TZONEVA,F.FOROUHAR,Z.CARPENTER, JRNL AUTH 2 A.AMBESI-IMPIOMBATO,M.SANCHEZ-MARTIN,R.KIRSCHNER-SCHWABE, JRNL AUTH 3 S.LEW,J.SEETHARAMAN,L.TONG,A.A.FERRANDO JRNL TITL STRUCTURE AND MECHANISMS OF NT5C2 MUTATIONS DRIVING JRNL TITL 2 THIOPURINE RESISTANCE IN RELAPSED LYMPHOBLASTIC LEUKEMIA. JRNL REF CANCER CELL V. 34 136 2018 JRNL REFN ISSN 1878-3686 JRNL PMID 29990496 JRNL DOI 10.1016/J.CCELL.2018.06.003 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 52385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 5284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2595 - 6.1442 0.99 1697 184 0.1843 0.1967 REMARK 3 2 6.1442 - 4.8800 1.00 1607 187 0.1762 0.2013 REMARK 3 3 4.8800 - 4.2641 1.00 1604 186 0.1367 0.1682 REMARK 3 4 4.2641 - 3.8746 0.99 1600 164 0.1475 0.1861 REMARK 3 5 3.8746 - 3.5971 0.99 1608 160 0.1496 0.1945 REMARK 3 6 3.5971 - 3.3852 1.00 1560 173 0.1624 0.1812 REMARK 3 7 3.3852 - 3.2157 1.00 1579 194 0.1661 0.2017 REMARK 3 8 3.2157 - 3.0758 1.00 1530 209 0.1748 0.2208 REMARK 3 9 3.0758 - 2.9575 1.00 1604 165 0.1769 0.2143 REMARK 3 10 2.9575 - 2.8554 1.00 1592 162 0.1727 0.2248 REMARK 3 11 2.8554 - 2.7662 1.00 1529 192 0.1660 0.2101 REMARK 3 12 2.7662 - 2.6871 1.00 1536 193 0.1720 0.2122 REMARK 3 13 2.6871 - 2.6164 1.00 1603 166 0.1773 0.1918 REMARK 3 14 2.6164 - 2.5526 1.00 1550 174 0.1655 0.1916 REMARK 3 15 2.5526 - 2.4946 1.00 1589 162 0.1690 0.2243 REMARK 3 16 2.4946 - 2.4415 1.00 1583 157 0.1640 0.1984 REMARK 3 17 2.4415 - 2.3927 1.00 1529 180 0.1641 0.2145 REMARK 3 18 2.3927 - 2.3475 1.00 1548 203 0.1645 0.2121 REMARK 3 19 2.3475 - 2.3056 1.00 1563 138 0.1584 0.2310 REMARK 3 20 2.3056 - 2.2665 1.00 1568 175 0.1590 0.2037 REMARK 3 21 2.2665 - 2.2300 1.00 1585 177 0.1670 0.2017 REMARK 3 22 2.2300 - 2.1957 1.00 1563 172 0.1727 0.2539 REMARK 3 23 2.1957 - 2.1634 1.00 1515 162 0.1664 0.1816 REMARK 3 24 2.1634 - 2.1329 1.00 1601 176 0.1726 0.2212 REMARK 3 25 2.1329 - 2.1041 1.00 1493 191 0.1743 0.2150 REMARK 3 26 2.1041 - 2.0768 1.00 1565 173 0.1668 0.2162 REMARK 3 27 2.0768 - 2.0508 1.00 1592 164 0.1779 0.2187 REMARK 3 28 2.0508 - 2.0261 1.00 1514 189 0.1886 0.2151 REMARK 3 29 2.0261 - 2.0025 1.00 1536 196 0.2019 0.2580 REMARK 3 30 2.0025 - 1.9800 1.00 1558 160 0.2076 0.2712 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3963 REMARK 3 ANGLE : 0.770 5350 REMARK 3 CHIRALITY : 0.050 565 REMARK 3 PLANARITY : 0.005 674 REMARK 3 DIHEDRAL : 15.296 2332 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -0.0213 38.8669 19.2991 REMARK 3 T TENSOR REMARK 3 T11: 0.1983 T22: 0.1661 REMARK 3 T33: 0.1756 T12: -0.0015 REMARK 3 T13: -0.0022 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.5310 L22: 0.2299 REMARK 3 L33: 0.3816 L12: -0.0768 REMARK 3 L13: 0.1299 L23: 0.0519 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: -0.0150 S13: -0.0209 REMARK 3 S21: 0.0654 S22: 0.0044 S23: 0.0220 REMARK 3 S31: 0.1229 S32: 0.0005 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DD3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69431 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 48.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.91000 REMARK 200 R SYM (I) : 0.92000 REMARK 200 FOR THE DATA SET : 25.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : 0.51000 REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE AND 5% 2 REMARK 280 -PROPANOL, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.45600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.25000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.09150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.45600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.25000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.09150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.45600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.25000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.09150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.45600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.25000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.09150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 74850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -155.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 126.50000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 126.50000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 404 REMARK 465 HIS A 405 REMARK 465 LEU A 406 REMARK 465 ALA A 407 REMARK 465 SER A 408 REMARK 465 SER A 409 REMARK 465 SER A 410 REMARK 465 ASN A 411 REMARK 465 GLU A 412 REMARK 465 ARG A 413 REMARK 465 PRO A 414 REMARK 465 ASP A 415 REMARK 465 ILE A 416 REMARK 465 SER A 417 REMARK 465 SER A 418 REMARK 465 ILE A 419 REMARK 465 THR A 489 REMARK 465 VAL A 490 REMARK 465 GLU A 491 REMARK 465 HIS A 492 REMARK 465 THR A 493 REMARK 465 HIS A 494 REMARK 465 VAL A 495 REMARK 465 ASP A 496 REMARK 465 ILE A 497 REMARK 465 ASN A 498 REMARK 465 GLU A 499 REMARK 465 MET A 500 REMARK 465 GLU A 501 REMARK 465 SER A 502 REMARK 465 PRO A 503 REMARK 465 LEU A 504 REMARK 465 ALA A 505 REMARK 465 THR A 506 REMARK 465 ARG A 507 REMARK 465 ASN A 508 REMARK 465 ARG A 509 REMARK 465 THR A 510 REMARK 465 SER A 511 REMARK 465 VAL A 512 REMARK 465 ASP A 513 REMARK 465 PHE A 514 REMARK 465 LYS A 515 REMARK 465 ASP A 516 REMARK 465 THR A 517 REMARK 465 ASP A 518 REMARK 465 TYR A 519 REMARK 465 LYS A 520 REMARK 465 ARG A 521 REMARK 465 HIS A 522 REMARK 465 GLN A 523 REMARK 465 LEU A 524 REMARK 465 THR A 525 REMARK 465 ARG A 526 REMARK 465 SER A 527 REMARK 465 ILE A 528 REMARK 465 SER A 529 REMARK 465 GLU A 530 REMARK 465 ILE A 531 REMARK 465 LYS A 532 REMARK 465 PRO A 533 REMARK 465 PRO A 534 REMARK 465 ASN A 535 REMARK 465 LEU A 536 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1026 O HOH A 1053 2.13 REMARK 500 O HOH A 900 O HOH A 992 2.13 REMARK 500 O HOH A 973 O HOH A 1057 2.18 REMARK 500 O HOH A 956 O HOH A 1076 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1006 O HOH A 1006 3555 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 53 -61.55 -99.59 REMARK 500 THR A 56 -69.55 -134.78 REMARK 500 ASN A 221 67.01 -152.84 REMARK 500 PHE A 354 -62.31 -94.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1142 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A1143 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A1144 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A1145 DISTANCE = 7.90 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 606 DBREF 6DD3 A 1 536 UNP P49902 5NTC_HUMAN 1 536 SEQADV 6DD3 ASN A 52 UNP P49902 ASP 52 ENGINEERED MUTATION SEQADV 6DD3 ALA A 407 UNP P49902 ASP 407 ENGINEERED MUTATION SEQRES 1 A 536 MET SER THR SER TRP SER ASP ARG LEU GLN ASN ALA ALA SEQRES 2 A 536 ASP MET PRO ALA ASN MET ASP LYS HIS ALA LEU LYS LYS SEQRES 3 A 536 TYR ARG ARG GLU ALA TYR HIS ARG VAL PHE VAL ASN ARG SEQRES 4 A 536 SER LEU ALA MET GLU LYS ILE LYS CYS PHE GLY PHE ASN SEQRES 5 A 536 MET ASP TYR THR LEU ALA VAL TYR LYS SER PRO GLU TYR SEQRES 6 A 536 GLU SER LEU GLY PHE GLU LEU THR VAL GLU ARG LEU VAL SEQRES 7 A 536 SER ILE GLY TYR PRO GLN GLU LEU LEU SER PHE ALA TYR SEQRES 8 A 536 ASP SER THR PHE PRO THR ARG GLY LEU VAL PHE ASP THR SEQRES 9 A 536 LEU TYR GLY ASN LEU LEU LYS VAL ASP ALA TYR GLY ASN SEQRES 10 A 536 LEU LEU VAL CYS ALA HIS GLY PHE ASN PHE ILE ARG GLY SEQRES 11 A 536 PRO GLU THR ARG GLU GLN TYR PRO ASN LYS PHE ILE GLN SEQRES 12 A 536 ARG ASP ASP THR GLU ARG PHE TYR ILE LEU ASN THR LEU SEQRES 13 A 536 PHE ASN LEU PRO GLU THR TYR LEU LEU ALA CYS LEU VAL SEQRES 14 A 536 ASP PHE PHE THR ASN CYS PRO ARG TYR THR SER CYS GLU SEQRES 15 A 536 THR GLY PHE LYS ASP GLY ASP LEU PHE MET SER TYR ARG SEQRES 16 A 536 SER MET PHE GLN ASP VAL ARG ASP ALA VAL ASP TRP VAL SEQRES 17 A 536 HIS TYR LYS GLY SER LEU LYS GLU LYS THR VAL GLU ASN SEQRES 18 A 536 LEU GLU LYS TYR VAL VAL LYS ASP GLY LYS LEU PRO LEU SEQRES 19 A 536 LEU LEU SER ARG MET LYS GLU VAL GLY LYS VAL PHE LEU SEQRES 20 A 536 ALA THR ASN SER ASP TYR LYS TYR THR ASP LYS ILE MET SEQRES 21 A 536 THR TYR LEU PHE ASP PHE PRO HIS GLY PRO LYS PRO GLY SEQRES 22 A 536 SER SER HIS ARG PRO TRP GLN SER TYR PHE ASP LEU ILE SEQRES 23 A 536 LEU VAL ASP ALA ARG LYS PRO LEU PHE PHE GLY GLU GLY SEQRES 24 A 536 THR VAL LEU ARG GLN VAL ASP THR LYS THR GLY LYS LEU SEQRES 25 A 536 LYS ILE GLY THR TYR THR GLY PRO LEU GLN HIS GLY ILE SEQRES 26 A 536 VAL TYR SER GLY GLY SER SER ASP THR ILE CYS ASP LEU SEQRES 27 A 536 LEU GLY ALA LYS GLY LYS ASP ILE LEU TYR ILE GLY ASP SEQRES 28 A 536 HIS ILE PHE GLY ASP ILE LEU LYS SER LYS LYS ARG GLN SEQRES 29 A 536 GLY TRP ARG THR PHE LEU VAL ILE PRO GLU LEU ALA GLN SEQRES 30 A 536 GLU LEU HIS VAL TRP THR ASP LYS SER SER LEU PHE GLU SEQRES 31 A 536 GLU LEU GLN SER LEU ASP ILE PHE LEU ALA GLU LEU TYR SEQRES 32 A 536 LYS HIS LEU ALA SER SER SER ASN GLU ARG PRO ASP ILE SEQRES 33 A 536 SER SER ILE GLN ARG ARG ILE LYS LYS VAL THR HIS ASP SEQRES 34 A 536 MET ASP MET CYS TYR GLY MET MET GLY SER LEU PHE ARG SEQRES 35 A 536 SER GLY SER ARG GLN THR LEU PHE ALA SER GLN VAL MET SEQRES 36 A 536 ARG TYR ALA ASP LEU TYR ALA ALA SER PHE ILE ASN LEU SEQRES 37 A 536 LEU TYR TYR PRO PHE SER TYR LEU PHE ARG ALA ALA HIS SEQRES 38 A 536 VAL LEU MET PRO HIS GLU SER THR VAL GLU HIS THR HIS SEQRES 39 A 536 VAL ASP ILE ASN GLU MET GLU SER PRO LEU ALA THR ARG SEQRES 40 A 536 ASN ARG THR SER VAL ASP PHE LYS ASP THR ASP TYR LYS SEQRES 41 A 536 ARG HIS GLN LEU THR ARG SER ILE SER GLU ILE LYS PRO SEQRES 42 A 536 PRO ASN LEU HET PO4 A 601 5 HET PO4 A 602 5 HET PO4 A 603 5 HET PO4 A 604 5 HET GOL A 605 6 HET GOL A 606 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 4(O4 P 3-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *445(H2 O) HELIX 1 AA1 SER A 4 MET A 15 1 12 HELIX 2 AA2 ASP A 20 GLU A 30 1 11 HELIX 3 AA3 ALA A 31 ARG A 34 5 4 HELIX 4 AA4 GLU A 44 ILE A 46 5 3 HELIX 5 AA5 PRO A 63 ILE A 80 1 18 HELIX 6 AA6 PRO A 83 PHE A 89 5 7 HELIX 7 AA7 ARG A 129 ARG A 134 1 6 HELIX 8 AA8 THR A 155 PHE A 157 5 3 HELIX 9 AA9 ASN A 158 CYS A 175 1 18 HELIX 10 AB1 TYR A 194 LYS A 211 1 18 HELIX 11 AB2 SER A 213 GLU A 220 1 8 HELIX 12 AB3 ASN A 221 VAL A 226 1 6 HELIX 13 AB4 LYS A 231 GLY A 243 1 13 HELIX 14 AB5 ASP A 252 PHE A 264 1 13 HELIX 15 AB6 PRO A 278 PHE A 283 5 6 HELIX 16 AB7 PRO A 293 GLY A 297 5 5 HELIX 17 AB8 SER A 331 GLY A 340 1 10 HELIX 18 AB9 LYS A 342 LYS A 344 5 3 HELIX 19 AC1 ASP A 356 GLY A 365 1 10 HELIX 20 AC2 GLU A 374 LYS A 385 1 12 HELIX 21 AC3 LYS A 385 TYR A 403 1 19 HELIX 22 AC4 ARG A 421 CYS A 433 1 13 HELIX 23 AC5 THR A 448 ALA A 458 1 11 HELIX 24 AC6 SER A 464 TYR A 471 5 8 HELIX 25 AC7 MET A 484 SER A 488 5 5 SHEET 1 AA1 9 PHE A 36 VAL A 37 0 SHEET 2 AA1 9 LEU A 460 ALA A 462 -1 O TYR A 461 N PHE A 36 SHEET 3 AA1 9 ARG A 367 VAL A 371 1 N LEU A 370 O LEU A 460 SHEET 4 AA1 9 ILE A 346 GLY A 350 1 N TYR A 348 O ARG A 367 SHEET 5 AA1 9 CYS A 48 PHE A 51 1 N GLY A 50 O ILE A 349 SHEET 6 AA1 9 LYS A 244 ALA A 248 1 O LYS A 244 N PHE A 49 SHEET 7 AA1 9 LEU A 285 VAL A 288 1 O LEU A 285 N LEU A 247 SHEET 8 AA1 9 VAL A 326 GLY A 329 1 O TYR A 327 N ILE A 286 SHEET 9 AA1 9 LEU A 302 VAL A 305 -1 N ARG A 303 O SER A 328 SHEET 1 AA2 2 LEU A 41 ALA A 42 0 SHEET 2 AA2 2 LEU A 476 PHE A 477 -1 O PHE A 477 N LEU A 41 SHEET 1 AA3 5 ASN A 126 PHE A 127 0 SHEET 2 AA3 5 LEU A 118 HIS A 123 -1 N HIS A 123 O ASN A 126 SHEET 3 AA3 5 ASN A 108 VAL A 112 -1 N LYS A 111 O LEU A 119 SHEET 4 AA3 5 VAL A 101 ASP A 103 -1 N VAL A 101 O LEU A 110 SHEET 5 AA3 5 PHE A 150 ILE A 152 -1 O TYR A 151 N PHE A 102 SHEET 1 AA4 3 THR A 179 SER A 180 0 SHEET 2 AA4 3 GLY A 184 ASP A 187 -1 O LYS A 186 N THR A 179 SHEET 3 AA4 3 LEU A 190 SER A 193 -1 O LEU A 190 N ASP A 187 SHEET 1 AA5 2 ARG A 442 SER A 443 0 SHEET 2 AA5 2 ARG A 446 GLN A 447 -1 O ARG A 446 N SER A 443 CISPEP 1 SER A 62 PRO A 63 0 5.53 CISPEP 2 LYS A 292 PRO A 293 0 4.45 SITE 1 AC1 7 ASN A 52 MET A 53 ASP A 54 THR A 249 SITE 2 AC1 7 ASN A 250 LYS A 292 HOH A 868 SITE 1 AC2 6 ARG A 144 GLN A 453 ARG A 456 TYR A 457 SITE 2 AC2 6 HOH A 710 HOH A 860 SITE 1 AC3 4 GLY A 130 PRO A 131 ARG A 134 LYS A 140 SITE 1 AC4 5 ASN A 117 LYS A 344 ARG A 446 HOH A 756 SITE 2 AC4 5 HOH A 910 SITE 1 AC5 6 ASP A 252 TYR A 253 VAL A 288 ASP A 289 SITE 2 AC5 6 GLY A 310 LEU A 312 SITE 1 AC6 7 PHE A 283 ASP A 284 GLN A 322 HIS A 323 SITE 2 AC6 7 GLY A 324 ILE A 325 HOH A 800 CRYST1 90.912 126.500 130.183 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011000 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007681 0.00000