HEADER HYDROLASE 10-MAY-18 6DDH TITLE CRYSTAL STRUCTURE OF THE DOUBLE MUTANT (D52N/R367Q) OF NT5C2-537X IN TITLE 2 THE ACTIVE STATE, NORTHEAST STRUCTURAL GENOMICS TARGET COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOLIC PURINE 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-536; COMPND 5 SYNONYM: CYTOSOLIC 5'-NUCLEOTIDASE II; COMPND 6 EC: 3.1.3.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5C2, NT5B, NT5CP, PNT5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL: ROSETTA 2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28ALIC; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLOC_NT5C2 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NORTHEAST STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, NESG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FOROUHAR,C.L.DIECK,G.TZONEVA,Z.CARPENTER,A.AMBESI-IMPIOMBATO, AUTHOR 2 M.SANCHEZ-MARTIN,R.KIRSCHNER-SCHWABE,S.LEW,J.SEETHARAMAN, AUTHOR 3 A.A.FERRANDO,L.TONG,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 11-OCT-23 6DDH 1 REMARK REVDAT 3 04-DEC-19 6DDH 1 REMARK REVDAT 2 25-JUL-18 6DDH 1 JRNL REVDAT 1 04-JUL-18 6DDH 0 JRNL AUTH C.L.DIECK,G.TZONEVA,F.FOROUHAR,Z.CARPENTER, JRNL AUTH 2 A.AMBESI-IMPIOMBATO,M.SANCHEZ-MARTIN,R.KIRSCHNER-SCHWABE, JRNL AUTH 3 S.LEW,J.SEETHARAMAN,L.TONG,A.A.FERRANDO JRNL TITL STRUCTURE AND MECHANISMS OF NT5C2 MUTATIONS DRIVING JRNL TITL 2 THIOPURINE RESISTANCE IN RELAPSED LYMPHOBLASTIC LEUKEMIA. JRNL REF CANCER CELL V. 34 136 2018 JRNL REFN ISSN 1878-3686 JRNL PMID 29990496 JRNL DOI 10.1016/J.CCELL.2018.06.003 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6718 - 6.6776 1.00 1364 155 0.1615 0.1861 REMARK 3 2 6.6776 - 5.3023 1.00 1299 150 0.1803 0.2265 REMARK 3 3 5.3023 - 4.6327 1.00 1277 144 0.1411 0.1823 REMARK 3 4 4.6327 - 4.2094 1.00 1280 154 0.1316 0.1659 REMARK 3 5 4.2094 - 3.9078 1.00 1273 132 0.1540 0.1808 REMARK 3 6 3.9078 - 3.6775 1.00 1263 141 0.1617 0.1867 REMARK 3 7 3.6775 - 3.4934 1.00 1244 165 0.1932 0.2225 REMARK 3 8 3.4934 - 3.3413 1.00 1253 147 0.2026 0.2195 REMARK 3 9 3.3413 - 3.2127 1.00 1279 121 0.2043 0.2805 REMARK 3 10 3.2127 - 3.1019 1.00 1236 152 0.2208 0.2770 REMARK 3 11 3.1019 - 3.0049 1.00 1257 136 0.2273 0.3339 REMARK 3 12 3.0049 - 2.9190 1.00 1240 153 0.2186 0.2589 REMARK 3 13 2.9190 - 2.8422 1.00 1251 139 0.2134 0.2726 REMARK 3 14 2.8422 - 2.7729 1.00 1273 124 0.2151 0.2405 REMARK 3 15 2.7729 - 2.7098 1.00 1276 115 0.2024 0.2654 REMARK 3 16 2.7098 - 2.6522 1.00 1290 129 0.2006 0.2318 REMARK 3 17 2.6522 - 2.5991 1.00 1228 142 0.1956 0.2527 REMARK 3 18 2.5991 - 2.5501 1.00 1228 142 0.2087 0.2417 REMARK 3 19 2.5501 - 2.5045 1.00 1242 151 0.2060 0.2849 REMARK 3 20 2.5045 - 2.4621 1.00 1265 134 0.2048 0.2871 REMARK 3 21 2.4621 - 2.4224 1.00 1256 123 0.2003 0.2556 REMARK 3 22 2.4224 - 2.3851 1.00 1244 148 0.2201 0.2921 REMARK 3 23 2.3851 - 2.3500 1.00 1239 138 0.2190 0.2787 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3976 REMARK 3 ANGLE : 0.834 5372 REMARK 3 CHIRALITY : 0.051 574 REMARK 3 PLANARITY : 0.005 677 REMARK 3 DIHEDRAL : 13.858 2348 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -0.3093 25.0343 45.8590 REMARK 3 T TENSOR REMARK 3 T11: 0.2292 T22: 0.2066 REMARK 3 T33: 0.2069 T12: 0.0009 REMARK 3 T13: 0.0119 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.6554 L22: 0.3310 REMARK 3 L33: 0.2990 L12: 0.1871 REMARK 3 L13: -0.0230 L23: 0.0203 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: 0.0114 S13: 0.1091 REMARK 3 S21: -0.0469 S22: -0.0139 S23: 0.0278 REMARK 3 S31: -0.1166 S32: 0.0123 S33: 0.0044 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 48.661 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: 2XCW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.5), 20% (W/V) PEG REMARK 280 1000, AND 0.1 M AMMONIUM NITRATE, 5 MM ATP, 5 MM IMP, 5 MM MGCL2, REMARK 280 MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.95800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.88100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.15250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.95800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.88100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.15250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.95800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.88100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.15250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.95800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.88100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.15250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 75750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 130.30500 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 130.30500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TYR A 403 REMARK 465 LYS A 404 REMARK 465 HIS A 405 REMARK 465 LEU A 406 REMARK 465 ASP A 407 REMARK 465 SER A 408 REMARK 465 SER A 409 REMARK 465 SER A 410 REMARK 465 ASN A 411 REMARK 465 GLU A 412 REMARK 465 ARG A 413 REMARK 465 PRO A 414 REMARK 465 ASP A 415 REMARK 465 THR A 489 REMARK 465 VAL A 490 REMARK 465 GLU A 491 REMARK 465 HIS A 492 REMARK 465 THR A 493 REMARK 465 HIS A 494 REMARK 465 VAL A 495 REMARK 465 ASP A 496 REMARK 465 ILE A 497 REMARK 465 ASN A 498 REMARK 465 GLU A 499 REMARK 465 MET A 500 REMARK 465 GLU A 501 REMARK 465 SER A 502 REMARK 465 PRO A 503 REMARK 465 LEU A 504 REMARK 465 ALA A 505 REMARK 465 THR A 506 REMARK 465 ARG A 507 REMARK 465 ASN A 508 REMARK 465 ARG A 509 REMARK 465 THR A 510 REMARK 465 SER A 511 REMARK 465 VAL A 512 REMARK 465 ASP A 513 REMARK 465 PHE A 514 REMARK 465 LYS A 515 REMARK 465 ASP A 516 REMARK 465 THR A 517 REMARK 465 ASP A 518 REMARK 465 TYR A 519 REMARK 465 LYS A 520 REMARK 465 ARG A 521 REMARK 465 HIS A 522 REMARK 465 GLN A 523 REMARK 465 LEU A 524 REMARK 465 THR A 525 REMARK 465 ARG A 526 REMARK 465 SER A 527 REMARK 465 ILE A 528 REMARK 465 SER A 529 REMARK 465 GLU A 530 REMARK 465 ILE A 531 REMARK 465 LYS A 532 REMARK 465 PRO A 533 REMARK 465 PRO A 534 REMARK 465 ASN A 535 REMARK 465 LEU A 536 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 148 NH1 ARG A 195 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 56 -70.04 -130.11 REMARK 500 PRO A 267 27.26 -79.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMP A 601 DBREF 6DDH A 1 536 UNP P49902 5NTC_HUMAN 1 536 SEQADV 6DDH GLY A -17 UNP P49902 EXPRESSION TAG SEQADV 6DDH SER A -16 UNP P49902 EXPRESSION TAG SEQADV 6DDH SER A -15 UNP P49902 EXPRESSION TAG SEQADV 6DDH HIS A -14 UNP P49902 EXPRESSION TAG SEQADV 6DDH HIS A -13 UNP P49902 EXPRESSION TAG SEQADV 6DDH HIS A -12 UNP P49902 EXPRESSION TAG SEQADV 6DDH HIS A -11 UNP P49902 EXPRESSION TAG SEQADV 6DDH HIS A -10 UNP P49902 EXPRESSION TAG SEQADV 6DDH HIS A -9 UNP P49902 EXPRESSION TAG SEQADV 6DDH SER A -8 UNP P49902 EXPRESSION TAG SEQADV 6DDH SER A -7 UNP P49902 EXPRESSION TAG SEQADV 6DDH GLY A -6 UNP P49902 EXPRESSION TAG SEQADV 6DDH LEU A -5 UNP P49902 EXPRESSION TAG SEQADV 6DDH VAL A -4 UNP P49902 EXPRESSION TAG SEQADV 6DDH PRO A -3 UNP P49902 EXPRESSION TAG SEQADV 6DDH ARG A -2 UNP P49902 EXPRESSION TAG SEQADV 6DDH GLY A -1 UNP P49902 EXPRESSION TAG SEQADV 6DDH SER A 0 UNP P49902 EXPRESSION TAG SEQADV 6DDH ASN A 52 UNP P49902 ASP 52 ENGINEERED MUTATION SEQADV 6DDH GLN A 367 UNP P49902 ARG 367 ENGINEERED MUTATION SEQRES 1 A 554 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 554 VAL PRO ARG GLY SER MET SER THR SER TRP SER ASP ARG SEQRES 3 A 554 LEU GLN ASN ALA ALA ASP MET PRO ALA ASN MET ASP LYS SEQRES 4 A 554 HIS ALA LEU LYS LYS TYR ARG ARG GLU ALA TYR HIS ARG SEQRES 5 A 554 VAL PHE VAL ASN ARG SER LEU ALA MET GLU LYS ILE LYS SEQRES 6 A 554 CYS PHE GLY PHE ASN MET ASP TYR THR LEU ALA VAL TYR SEQRES 7 A 554 LYS SER PRO GLU TYR GLU SER LEU GLY PHE GLU LEU THR SEQRES 8 A 554 VAL GLU ARG LEU VAL SER ILE GLY TYR PRO GLN GLU LEU SEQRES 9 A 554 LEU SER PHE ALA TYR ASP SER THR PHE PRO THR ARG GLY SEQRES 10 A 554 LEU VAL PHE ASP THR LEU TYR GLY ASN LEU LEU LYS VAL SEQRES 11 A 554 ASP ALA TYR GLY ASN LEU LEU VAL CYS ALA HIS GLY PHE SEQRES 12 A 554 ASN PHE ILE ARG GLY PRO GLU THR ARG GLU GLN TYR PRO SEQRES 13 A 554 ASN LYS PHE ILE GLN ARG ASP ASP THR GLU ARG PHE TYR SEQRES 14 A 554 ILE LEU ASN THR LEU PHE ASN LEU PRO GLU THR TYR LEU SEQRES 15 A 554 LEU ALA CYS LEU VAL ASP PHE PHE THR ASN CYS PRO ARG SEQRES 16 A 554 TYR THR SER CYS GLU THR GLY PHE LYS ASP GLY ASP LEU SEQRES 17 A 554 PHE MET SER TYR ARG SER MET PHE GLN ASP VAL ARG ASP SEQRES 18 A 554 ALA VAL ASP TRP VAL HIS TYR LYS GLY SER LEU LYS GLU SEQRES 19 A 554 LYS THR VAL GLU ASN LEU GLU LYS TYR VAL VAL LYS ASP SEQRES 20 A 554 GLY LYS LEU PRO LEU LEU LEU SER ARG MET LYS GLU VAL SEQRES 21 A 554 GLY LYS VAL PHE LEU ALA THR ASN SER ASP TYR LYS TYR SEQRES 22 A 554 THR ASP LYS ILE MET THR TYR LEU PHE ASP PHE PRO HIS SEQRES 23 A 554 GLY PRO LYS PRO GLY SER SER HIS ARG PRO TRP GLN SER SEQRES 24 A 554 TYR PHE ASP LEU ILE LEU VAL ASP ALA ARG LYS PRO LEU SEQRES 25 A 554 PHE PHE GLY GLU GLY THR VAL LEU ARG GLN VAL ASP THR SEQRES 26 A 554 LYS THR GLY LYS LEU LYS ILE GLY THR TYR THR GLY PRO SEQRES 27 A 554 LEU GLN HIS GLY ILE VAL TYR SER GLY GLY SER SER ASP SEQRES 28 A 554 THR ILE CYS ASP LEU LEU GLY ALA LYS GLY LYS ASP ILE SEQRES 29 A 554 LEU TYR ILE GLY ASP HIS ILE PHE GLY ASP ILE LEU LYS SEQRES 30 A 554 SER LYS LYS ARG GLN GLY TRP GLN THR PHE LEU VAL ILE SEQRES 31 A 554 PRO GLU LEU ALA GLN GLU LEU HIS VAL TRP THR ASP LYS SEQRES 32 A 554 SER SER LEU PHE GLU GLU LEU GLN SER LEU ASP ILE PHE SEQRES 33 A 554 LEU ALA GLU LEU TYR LYS HIS LEU ASP SER SER SER ASN SEQRES 34 A 554 GLU ARG PRO ASP ILE SER SER ILE GLN ARG ARG ILE LYS SEQRES 35 A 554 LYS VAL THR HIS ASP MET ASP MET CYS TYR GLY MET MET SEQRES 36 A 554 GLY SER LEU PHE ARG SER GLY SER ARG GLN THR LEU PHE SEQRES 37 A 554 ALA SER GLN VAL MET ARG TYR ALA ASP LEU TYR ALA ALA SEQRES 38 A 554 SER PHE ILE ASN LEU LEU TYR TYR PRO PHE SER TYR LEU SEQRES 39 A 554 PHE ARG ALA ALA HIS VAL LEU MET PRO HIS GLU SER THR SEQRES 40 A 554 VAL GLU HIS THR HIS VAL ASP ILE ASN GLU MET GLU SER SEQRES 41 A 554 PRO LEU ALA THR ARG ASN ARG THR SER VAL ASP PHE LYS SEQRES 42 A 554 ASP THR ASP TYR LYS ARG HIS GLN LEU THR ARG SER ILE SEQRES 43 A 554 SER GLU ILE LYS PRO PRO ASN LEU HET IMP A 601 23 HETNAM IMP INOSINIC ACID FORMUL 2 IMP C10 H13 N4 O8 P FORMUL 3 HOH *127(H2 O) HELIX 1 AA1 SER A 4 ASP A 14 1 11 HELIX 2 AA2 ASP A 20 ARG A 28 1 9 HELIX 3 AA3 ARG A 29 ARG A 34 5 6 HELIX 4 AA4 GLU A 44 ILE A 46 5 3 HELIX 5 AA5 PRO A 63 ILE A 80 1 18 HELIX 6 AA6 PRO A 83 PHE A 89 5 7 HELIX 7 AA7 ARG A 129 ARG A 134 1 6 HELIX 8 AA8 THR A 155 PHE A 157 5 3 HELIX 9 AA9 ASN A 158 CYS A 175 1 18 HELIX 10 AB1 TYR A 194 LYS A 211 1 18 HELIX 11 AB2 SER A 213 GLU A 220 1 8 HELIX 12 AB3 ASN A 221 VAL A 226 1 6 HELIX 13 AB4 GLY A 230 GLY A 243 1 14 HELIX 14 AB5 ASP A 252 PHE A 264 1 13 HELIX 15 AB6 PRO A 278 PHE A 283 5 6 HELIX 16 AB7 PRO A 293 GLY A 297 5 5 HELIX 17 AB8 SER A 331 GLY A 340 1 10 HELIX 18 AB9 LYS A 342 LYS A 344 5 3 HELIX 19 AC1 ASP A 356 GLY A 365 1 10 HELIX 20 AC2 GLU A 374 LYS A 385 1 12 HELIX 21 AC3 LYS A 385 LEU A 402 1 18 HELIX 22 AC4 SER A 417 CYS A 433 1 17 HELIX 23 AC5 THR A 448 ALA A 458 1 11 HELIX 24 AC6 SER A 464 TYR A 471 5 8 HELIX 25 AC7 MET A 484 SER A 488 5 5 SHEET 1 AA110 PHE A 36 VAL A 37 0 SHEET 2 AA110 LEU A 460 ALA A 462 -1 O TYR A 461 N PHE A 36 SHEET 3 AA110 GLN A 367 VAL A 371 1 N LEU A 370 O LEU A 460 SHEET 4 AA110 ILE A 346 GLY A 350 1 N GLY A 350 O VAL A 371 SHEET 5 AA110 CYS A 48 PHE A 51 1 N GLY A 50 O ILE A 349 SHEET 6 AA110 LYS A 244 ALA A 248 1 O LYS A 244 N PHE A 49 SHEET 7 AA110 LEU A 285 VAL A 288 1 O LEU A 287 N LEU A 247 SHEET 8 AA110 VAL A 326 GLY A 329 1 O TYR A 327 N ILE A 286 SHEET 9 AA110 LEU A 302 ASP A 306 -1 N ARG A 303 O SER A 328 SHEET 10 AA110 LYS A 311 LEU A 312 -1 O LYS A 311 N ASP A 306 SHEET 1 AA2 2 LEU A 41 ALA A 42 0 SHEET 2 AA2 2 LEU A 476 PHE A 477 -1 O PHE A 477 N LEU A 41 SHEET 1 AA3 5 ASN A 126 PHE A 127 0 SHEET 2 AA3 5 LEU A 118 HIS A 123 -1 N HIS A 123 O ASN A 126 SHEET 3 AA3 5 ASN A 108 VAL A 112 -1 N LYS A 111 O LEU A 119 SHEET 4 AA3 5 VAL A 101 ASP A 103 -1 N VAL A 101 O LEU A 110 SHEET 5 AA3 5 PHE A 150 ILE A 152 -1 O TYR A 151 N PHE A 102 SHEET 1 AA4 3 THR A 179 SER A 180 0 SHEET 2 AA4 3 GLY A 184 ASP A 187 -1 O LYS A 186 N THR A 179 SHEET 3 AA4 3 LEU A 190 SER A 193 -1 O MET A 192 N PHE A 185 SHEET 1 AA5 2 ARG A 442 SER A 443 0 SHEET 2 AA5 2 ARG A 446 GLN A 447 -1 O ARG A 446 N SER A 443 LINK OD2 ASP A 54 C5' IMP A 601 1555 1555 1.38 CISPEP 1 SER A 62 PRO A 63 0 4.02 CISPEP 2 LYS A 292 PRO A 293 0 5.92 SITE 1 AC1 14 ASN A 52 MET A 53 ASP A 54 PHE A 157 SITE 2 AC1 14 ARG A 202 ASP A 206 HIS A 209 TYR A 210 SITE 3 AC1 14 LYS A 215 THR A 249 ASN A 250 SER A 251 SITE 4 AC1 14 LYS A 292 HOH A 766 CRYST1 91.916 127.762 130.305 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010879 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007674 0.00000