HEADER HYDROLASE 10-MAY-18 6DDT TITLE MOUSE BETA-MANNOSIDASE (MANBA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-MANNOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LYSOSOMAL BETA A MANNOSIDASE,MANNANASE,MANNASE; COMPND 5 EC: 3.2.1.25; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MANBA, BMN; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS MANNOSIDASE LYSOSOMAL GLYCOSIDASE GH2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.GYTZ,J.LIANG,Y.LIANG,A.GORELIK,K.ILLES,B.NAGAR REVDAT 5 11-OCT-23 6DDT 1 HETSYN LINK REVDAT 4 29-JUL-20 6DDT 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 08-JAN-20 6DDT 1 REMARK REVDAT 2 17-APR-19 6DDT 1 JRNL REVDAT 1 09-JAN-19 6DDT 0 JRNL AUTH H.GYTZ,J.LIANG,Y.LIANG,A.GORELIK,K.ILLES,B.NAGAR JRNL TITL THE STRUCTURE OF MAMMALIAN BETA-MANNOSIDASE PROVIDES INSIGHT JRNL TITL 2 INTO BETA-MANNOSIDOSIS AND NYSTAGMUS. JRNL REF FEBS J. V. 286 1319 2019 JRNL REFN ISSN 1742-4658 JRNL PMID 30552791 JRNL DOI 10.1111/FEBS.14731 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.6 REMARK 3 NUMBER OF REFLECTIONS : 48793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1632 - 4.9367 1.00 4839 188 0.1738 0.1907 REMARK 3 2 4.9367 - 3.9191 1.00 4744 197 0.1289 0.1618 REMARK 3 3 3.9191 - 3.4239 0.99 4672 189 0.1513 0.1696 REMARK 3 4 3.4239 - 3.1109 0.98 4626 178 0.1716 0.2292 REMARK 3 5 3.1109 - 2.8880 0.97 4530 181 0.1906 0.2518 REMARK 3 6 2.8880 - 2.7177 0.94 4466 176 0.1992 0.2321 REMARK 3 7 2.7177 - 2.5816 0.87 4055 165 0.2036 0.2308 REMARK 3 8 2.5816 - 2.4692 0.75 3545 139 0.2075 0.2434 REMARK 3 9 2.4692 - 2.3742 0.67 3097 126 0.2079 0.2695 REMARK 3 10 2.3742 - 2.2923 0.58 2694 113 0.2121 0.2397 REMARK 3 11 2.2923 - 2.2206 0.50 2342 96 0.2171 0.1917 REMARK 3 12 2.2206 - 2.1571 0.41 1919 75 0.2200 0.2921 REMARK 3 13 2.1571 - 2.1003 0.30 1381 60 0.2346 0.2633 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7381 REMARK 3 ANGLE : 0.633 10042 REMARK 3 CHIRALITY : 0.045 1092 REMARK 3 PLANARITY : 0.003 1262 REMARK 3 DIHEDRAL : 12.481 4295 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4509 62.2518 121.8304 REMARK 3 T TENSOR REMARK 3 T11: 0.2357 T22: 0.1271 REMARK 3 T33: 0.1732 T12: -0.0236 REMARK 3 T13: 0.0214 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.8058 L22: 0.7570 REMARK 3 L33: 1.0356 L12: 0.2163 REMARK 3 L13: 0.0319 L23: 0.1472 REMARK 3 S TENSOR REMARK 3 S11: -0.0340 S12: 0.1434 S13: 0.0209 REMARK 3 S21: -0.0525 S22: 0.0712 S23: -0.2357 REMARK 3 S31: -0.3324 S32: 0.1765 S33: -0.0166 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4764 76.1180 150.3216 REMARK 3 T TENSOR REMARK 3 T11: 0.8882 T22: 0.1110 REMARK 3 T33: 0.2631 T12: -0.0706 REMARK 3 T13: -0.0387 T23: -0.0623 REMARK 3 L TENSOR REMARK 3 L11: 1.0929 L22: 1.3109 REMARK 3 L33: 0.9544 L12: 0.1509 REMARK 3 L13: -0.0777 L23: 0.7893 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.2275 S13: 0.1770 REMARK 3 S21: 0.2383 S22: -0.1491 S23: 0.0557 REMARK 3 S31: -0.3231 S32: 0.0270 S33: 0.0177 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 281 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4827 64.6622 147.8159 REMARK 3 T TENSOR REMARK 3 T11: 0.4919 T22: 0.2968 REMARK 3 T33: 0.2287 T12: -0.0372 REMARK 3 T13: 0.1180 T23: -0.0718 REMARK 3 L TENSOR REMARK 3 L11: 0.8175 L22: 0.6122 REMARK 3 L33: 0.5846 L12: 0.2457 REMARK 3 L13: 0.2612 L23: 0.2968 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: -0.0945 S13: 0.1751 REMARK 3 S21: 0.3535 S22: -0.1369 S23: 0.2390 REMARK 3 S31: -0.2652 S32: -0.3831 S33: -0.0026 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 562 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3900 47.3765 138.4616 REMARK 3 T TENSOR REMARK 3 T11: 0.2377 T22: 0.1033 REMARK 3 T33: 0.1514 T12: -0.0447 REMARK 3 T13: -0.0097 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.7928 L22: 0.9888 REMARK 3 L33: 1.4500 L12: 0.0911 REMARK 3 L13: -0.0913 L23: 0.1829 REMARK 3 S TENSOR REMARK 3 S11: 0.0580 S12: -0.0288 S13: -0.1087 REMARK 3 S21: 0.3174 S22: -0.0825 S23: 0.0448 REMARK 3 S31: 0.2516 S32: -0.2405 S33: 0.0326 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 563 THROUGH 640 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0681 34.3340 116.7236 REMARK 3 T TENSOR REMARK 3 T11: 0.3591 T22: 0.4148 REMARK 3 T33: 0.3117 T12: -0.2097 REMARK 3 T13: 0.0300 T23: -0.1379 REMARK 3 L TENSOR REMARK 3 L11: 0.3630 L22: 0.3544 REMARK 3 L33: 0.4016 L12: 0.0800 REMARK 3 L13: -0.2570 L23: -0.2550 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: 0.1826 S13: -0.2929 REMARK 3 S21: -0.0190 S22: -0.2233 S23: 0.1404 REMARK 3 S31: 0.5899 S32: -0.5713 S33: 0.0223 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 641 THROUGH 804 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9321 35.8303 132.8383 REMARK 3 T TENSOR REMARK 3 T11: 0.3422 T22: 0.9128 REMARK 3 T33: 0.5736 T12: -0.5393 REMARK 3 T13: 0.2139 T23: -0.2358 REMARK 3 L TENSOR REMARK 3 L11: 0.3023 L22: 0.1497 REMARK 3 L33: 0.4820 L12: 0.0108 REMARK 3 L13: -0.2840 L23: -0.1232 REMARK 3 S TENSOR REMARK 3 S11: 0.1270 S12: 0.1960 S13: -0.2535 REMARK 3 S21: 0.2504 S22: -0.3366 S23: 0.4798 REMARK 3 S31: 0.5780 S32: -1.0996 S33: -0.0017 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 805 THROUGH 879 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9056 46.2701 113.6496 REMARK 3 T TENSOR REMARK 3 T11: 0.1944 T22: 0.9926 REMARK 3 T33: 0.5113 T12: -0.1063 REMARK 3 T13: -0.1632 T23: -0.1439 REMARK 3 L TENSOR REMARK 3 L11: 0.4131 L22: 0.4556 REMARK 3 L33: 0.3865 L12: 0.1296 REMARK 3 L13: 0.0308 L23: 0.2544 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: 0.3283 S13: -0.0581 REMARK 3 S21: -0.1511 S22: -0.1702 S23: 0.5111 REMARK 3 S31: 0.0215 S32: -0.7992 S33: -0.0674 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234446. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.152 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 76.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5N6U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19-21% PEG 5000, 0.1 M HEPES, PH 7, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.72900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 12 REMARK 465 ARG A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 62 HH22 ARG A 585 1.48 REMARK 500 HE21 GLN A 377 O HOH A 1009 1.57 REMARK 500 OD1 ASP A 497 HG SER A 499 1.60 REMARK 500 O HOH A 1410 O HOH A 1464 1.88 REMARK 500 O HOH A 1242 O HOH A 1287 2.06 REMARK 500 O HOH A 1397 O HOH A 1518 2.10 REMARK 500 O HOH A 1422 O HOH A 1519 2.10 REMARK 500 O HOH A 1451 O HOH A 1518 2.11 REMARK 500 O HOH A 1320 O HOH A 1407 2.12 REMARK 500 O HOH A 1374 O HOH A 1404 2.15 REMARK 500 O HOH A 1378 O HOH A 1398 2.17 REMARK 500 O HOH A 1198 O HOH A 1470 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 19 35.51 -97.41 REMARK 500 ARG A 64 -109.86 41.94 REMARK 500 PRO A 87 34.45 -94.06 REMARK 500 THR A 105 -50.05 -139.56 REMARK 500 ASP A 120 15.13 -148.94 REMARK 500 HIS A 177 30.59 75.10 REMARK 500 SER A 189 153.24 98.45 REMARK 500 PRO A 197 94.56 -65.92 REMARK 500 ILE A 212 -68.04 76.11 REMARK 500 GLN A 298 41.70 -101.71 REMARK 500 GLU A 330 75.30 -119.73 REMARK 500 PHE A 341 86.03 -160.06 REMARK 500 TRP A 518 -6.12 90.26 REMARK 500 TRP A 543 -9.46 -59.38 REMARK 500 TYR A 555 131.22 -177.82 REMARK 500 PRO A 728 43.15 -85.73 REMARK 500 SER A 733 78.59 -166.46 REMARK 500 SER A 738 37.29 -97.40 REMARK 500 LYS A 779 -20.82 93.25 REMARK 500 VAL A 824 109.15 -53.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1568 DISTANCE = 6.15 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 508 O REMARK 620 2 ASN A 509 OD1 82.1 REMARK 620 3 PRO A 523 O 96.9 83.4 REMARK 620 4 SER A 525 O 151.8 92.0 109.8 REMARK 620 5 TYR A 528 O 91.0 84.1 164.1 60.9 REMARK 620 6 ASP A 530 O 75.9 157.6 94.8 109.5 100.5 REMARK 620 N 1 2 3 4 5 DBREF 6DDT A 22 879 UNP Q8K2I4 MANBA_MOUSE 22 879 SEQADV 6DDT ASP A 12 UNP Q8K2I4 EXPRESSION TAG SEQADV 6DDT ARG A 13 UNP Q8K2I4 EXPRESSION TAG SEQADV 6DDT HIS A 14 UNP Q8K2I4 EXPRESSION TAG SEQADV 6DDT HIS A 15 UNP Q8K2I4 EXPRESSION TAG SEQADV 6DDT HIS A 16 UNP Q8K2I4 EXPRESSION TAG SEQADV 6DDT HIS A 17 UNP Q8K2I4 EXPRESSION TAG SEQADV 6DDT HIS A 18 UNP Q8K2I4 EXPRESSION TAG SEQADV 6DDT HIS A 19 UNP Q8K2I4 EXPRESSION TAG SEQADV 6DDT LYS A 20 UNP Q8K2I4 EXPRESSION TAG SEQADV 6DDT LEU A 21 UNP Q8K2I4 EXPRESSION TAG SEQRES 1 A 868 ASP ARG HIS HIS HIS HIS HIS HIS LYS LEU SER TYR SER SEQRES 2 A 868 LEU SER GLY SER TRP ARG VAL SER ASN GLY ASN GLY SER SEQRES 3 A 868 LEU GLU LEU PRO ALA THR VAL PRO GLY TYR VAL HIS SER SEQRES 4 A 868 ALA LEU HIS GLN HIS GLY LEU ILE GLN ASP PRO TYR TYR SEQRES 5 A 868 ARG PHE ASN ASP LEU ASN TYR ARG TRP ILE SER LEU ASP SEQRES 6 A 868 ASN TRP THR TYR SER THR GLU PHE LYS ILE PRO PHE ASN SEQRES 7 A 868 LEU SER GLU TRP GLN LYS VAL LYS LEU ILE PHE ASP GLY SEQRES 8 A 868 VAL ASP THR VAL ALA GLU ILE LEU PHE ASN ASN VAL THR SEQRES 9 A 868 ILE GLY LYS THR ASP ASN MET PHE THR GLY TYR SER PHE SEQRES 10 A 868 ASP ILE THR ASN VAL VAL LYS ASP VAL ASN SER LEU LYS SEQRES 11 A 868 LEU GLN PHE ARG SER ALA VAL GLN TYR ALA GLU CYS GLN SEQRES 12 A 868 SER LYS ALA HIS THR SER TYR ARG VAL PRO PRO GLU CYS SEQRES 13 A 868 PRO PRO VAL GLU GLN LYS GLY GLU CYS HIS VAL ASN PHE SEQRES 14 A 868 ILE ARG LYS ALA GLN CYS SER PHE SER TRP ASP TRP GLY SEQRES 15 A 868 PRO SER PHE PRO SER GLN GLY ILE TRP LYS ASP VAL ARG SEQRES 16 A 868 ILE GLU ALA TYR ASN ILE ALA HIS LEU ASP TYR LEU THR SEQRES 17 A 868 PHE LEU PRO VAL TYR ASP ASN ALA SER GLN ALA TRP ASN SEQRES 18 A 868 ILE GLU ILE LYS ALA SER PHE ASP VAL ALA SER SER LYS SEQRES 19 A 868 SER VAL GLY GLY GLN VAL THR VAL ALA ILE PRO GLN LEU SEQRES 20 A 868 LYS THR GLN GLN THR ASN ASP ILE GLU LEU GLN GLN GLU SEQRES 21 A 868 GLN ARG ILE VAL LYS LEU LEU VAL LYS ILE ARG LYS ASP SEQRES 22 A 868 VAL ALA VAL GLU THR TRP TRP PRO ARG GLY HIS GLY ASN SEQRES 23 A 868 GLN THR GLY TYR ASN MET THR ILE LEU PHE ALA LEU ASP SEQRES 24 A 868 GLY GLY LEU LYS ILE GLU LYS ALA ALA LYS VAL TYR PHE SEQRES 25 A 868 ARG THR VAL GLN LEU ILE GLU GLU GLY ILE LYS GLY SER SEQRES 26 A 868 PRO GLY LEU SER PHE TYR PHE LYS ILE ASN GLY LEU PRO SEQRES 27 A 868 ILE PHE LEU LYS GLY SER ASN TRP ILE PRO ALA ASP SER SEQRES 28 A 868 PHE GLN ASP LYS VAL THR SER ASP ARG LEU GLN LEU LEU SEQRES 29 A 868 PHE GLN SER VAL VAL ASP ALA ASN MET ASN THR LEU ARG SEQRES 30 A 868 VAL TRP GLY GLY GLY ILE TYR GLU GLN ASP GLU PHE TYR SEQRES 31 A 868 ALA LEU CYS ASP GLU LEU GLY ILE MET VAL TRP GLN ASP SEQRES 32 A 868 PHE MET PHE ALA SER ALA LEU TYR PRO THR GLU PRO GLY SEQRES 33 A 868 PHE LEU ALA SER VAL ARG LYS GLU VAL THR TYR GLN VAL SEQRES 34 A 868 ARG ARG LEU LYS SER HIS PRO SER ILE ILE ILE TRP SER SEQRES 35 A 868 GLY ASN ASN GLU ASN GLU VAL ALA LEU SER VAL ASN TRP SEQRES 36 A 868 PHE HIS VAL ASN PRO ARG ASP MET LYS THR TYR ILE ASP SEQRES 37 A 868 ASP TYR VAL THR LEU TYR VAL LYS ASN ILE ARG LYS ILE SEQRES 38 A 868 VAL LEU SER GLU ASP LYS SER ARG PRO PHE ILE ALA SER SEQRES 39 A 868 SER PRO THR ASN GLY MET LYS THR MET GLU GLU GLY TRP SEQRES 40 A 868 ILE SER TYR ASP PRO TYR SER ILE GLN TYR GLY ASP ILE SEQRES 41 A 868 HIS PHE TYR ASN TYR ALA ASP ASP CYS TRP ASN TRP LYS SEQRES 42 A 868 ILE PHE PRO LYS ALA ARG LEU VAL SER GLU TYR GLY TYR SEQRES 43 A 868 GLN SER TRP PRO SER PHE SER THR LEU GLU LYS VAL SER SEQRES 44 A 868 SER GLN GLU ASP TRP ALA TYR ASN SER ARG PHE SER LEU SEQRES 45 A 868 HIS ARG GLN HIS HIS GLU ASP GLY ASN HIS GLN MET LEU SEQRES 46 A 868 HIS GLN VAL LYS MET HIS PHE LYS LEU PRO GLN GLY THR SEQRES 47 A 868 ASP PRO LEU ARG THR PHE LYS ASP THR ILE TYR LEU THR SEQRES 48 A 868 GLN VAL MET GLN ALA GLN CYS ILE LYS THR GLU THR GLU SEQRES 49 A 868 PHE TYR LEU ARG SER ARG SER GLU ILE VAL ASP GLY LYS SEQRES 50 A 868 GLY HIS THR MET GLY ALA LEU TYR TRP GLN LEU ASN ASP SEQRES 51 A 868 ILE TRP GLN ALA PRO SER TRP ALA SER LEU GLU TYR GLY SEQRES 52 A 868 GLY LYS TRP LYS MET LEU HIS TYR PHE ALA ARG ARG PHE SEQRES 53 A 868 PHE ALA PRO LEU LEU PRO VAL GLY PHE GLU ASP GLU GLY SEQRES 54 A 868 VAL PHE TYR VAL TYR GLY VAL SER ASP LEU HIS LYS ASP SEQRES 55 A 868 HIS HIS THR GLN LEU THR VAL ARG LEU HIS HIS TRP SER SEQRES 56 A 868 SER PRO LYS PRO LEU CYS SER LEU VAL ASN SER SER ILE SEQRES 57 A 868 VAL VAL LYS ALA GLY GLU ALA VAL VAL LEU PHE GLN MET SEQRES 58 A 868 PRO VAL SER GLU LEU LEU LYS ARG CYS ARG GLY CYS THR SEQRES 59 A 868 ARG GLU THR CYS VAL VAL SER PHE TYR PHE SER THR ASP SEQRES 60 A 868 LYS GLU LEU PHE SER PRO THR ASN TYR HIS PHE LEU SER SEQRES 61 A 868 SER LEU LYS ASP ALA LYS GLY LEU LEU GLU ALA ASN ILE SEQRES 62 A 868 THR VAL ASN ILE SER GLN LYS GLY ASN VAL PHE VAL PHE SEQRES 63 A 868 ASP LEU GLU THR SER ALA VAL ALA PRO PHE VAL TRP LEU SEQRES 64 A 868 ASP VAL GLY SER ILE PRO GLY ARG PHE SER ASP ASN GLY SEQRES 65 A 868 PHE LEU MET ILE ARG LYS LYS LEU SER VAL LEU PHE TYR SEQRES 66 A 868 PRO TRP LYS PRO THR SER LYS SER GLU LEU GLN GLN ALA SEQRES 67 A 868 PHE SER VAL THR SER LEU THR ASP THR TYR HET NAG B 1 27 HET FUC B 2 21 HET NAG C 1 27 HET NAG C 2 27 HET NAG D 1 26 HET NAG D 2 28 HET FUC D 3 21 HET CA A 901 1 HET NAG A 902 28 HET NAG A 910 28 HET NAG A 911 28 HET EDO A 912 10 HET EDO A 913 10 HET EDO A 914 10 HET EDO A 915 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 2 FUC 2(C6 H12 O5) FORMUL 5 CA CA 2+ FORMUL 9 EDO 4(C2 H6 O2) FORMUL 13 HOH *568(H2 O) HELIX 1 AA1 VAL A 48 HIS A 55 1 8 HELIX 2 AA2 PHE A 65 TYR A 70 1 6 HELIX 3 AA3 TYR A 70 ASP A 76 1 7 HELIX 4 AA4 ASN A 89 TRP A 93 5 5 HELIX 5 AA5 SER A 146 HIS A 158 1 13 HELIX 6 AA6 PRO A 169 LYS A 173 5 5 HELIX 7 AA7 HIS A 177 ILE A 181 5 5 HELIX 8 AA8 PRO A 256 LYS A 259 5 4 HELIX 9 AA9 PHE A 363 VAL A 367 5 5 HELIX 10 AB1 THR A 368 ALA A 382 1 15 HELIX 11 AB2 GLN A 397 GLY A 408 1 12 HELIX 12 AB3 GLU A 425 LYS A 444 1 20 HELIX 13 AB4 GLU A 457 ASN A 465 1 9 HELIX 14 AB5 ASP A 473 VAL A 486 1 14 HELIX 15 AB6 ASN A 488 ASP A 497 1 10 HELIX 16 AB7 GLY A 510 GLU A 516 1 7 HELIX 17 AB8 ASN A 542 PHE A 546 5 5 HELIX 18 AB9 SER A 562 LYS A 568 1 7 HELIX 19 AC1 VAL A 569 SER A 570 5 2 HELIX 20 AC2 SER A 571 TRP A 575 5 5 HELIX 21 AC3 SER A 579 GLN A 586 1 8 HELIX 22 AC4 ASP A 590 MET A 601 1 12 HELIX 23 AC5 ASP A 610 SER A 640 1 31 HELIX 24 AC6 LYS A 678 PHE A 688 1 11 HELIX 25 AC7 VAL A 754 ARG A 760 1 7 HELIX 26 AC8 SER A 792 ALA A 796 5 5 HELIX 27 AC9 SER A 862 PHE A 870 1 9 HELIX 28 AD1 SER A 874 TYR A 879 5 6 SHEET 1 AA1 4 LYS A 20 SER A 24 0 SHEET 2 AA1 4 VAL A 205 TYR A 210 -1 O ILE A 207 N TYR A 23 SHEET 3 AA1 4 LYS A 95 PHE A 100 -1 N LYS A 97 O GLU A 208 SHEET 4 AA1 4 TYR A 126 ASP A 129 -1 O TYR A 126 N PHE A 100 SHEET 1 AA2 6 GLU A 39 VAL A 44 0 SHEET 2 AA2 6 GLY A 27 SER A 32 -1 N TRP A 29 O ALA A 42 SHEET 3 AA2 6 THR A 79 LYS A 85 -1 O SER A 81 N ARG A 30 SHEET 4 AA2 6 VAL A 137 PHE A 144 -1 O LEU A 142 N TYR A 80 SHEET 5 AA2 6 VAL A 106 PHE A 111 -1 N GLU A 108 O GLN A 143 SHEET 6 AA2 6 VAL A 114 ASP A 120 -1 O VAL A 114 N PHE A 111 SHEET 1 AA3 2 GLY A 46 TYR A 47 0 SHEET 2 AA3 2 GLY A 200 ILE A 201 -1 O ILE A 201 N GLY A 46 SHEET 1 AA4 2 PHE A 188 TRP A 190 0 SHEET 2 AA4 2 GLY A 193 SER A 195 -1 O GLY A 193 N TRP A 190 SHEET 1 AA5 3 ALA A 213 ASP A 225 0 SHEET 2 AA5 3 ALA A 230 VAL A 241 -1 O LYS A 236 N THR A 219 SHEET 3 AA5 3 ILE A 274 LYS A 280 -1 O VAL A 275 N ALA A 237 SHEET 1 AA6 4 THR A 260 LEU A 268 0 SHEET 2 AA6 4 VAL A 247 ILE A 255 -1 N VAL A 247 O LEU A 268 SHEET 3 AA6 4 TYR A 301 LEU A 309 -1 O LEU A 306 N THR A 252 SHEET 4 AA6 4 LYS A 314 VAL A 321 -1 O VAL A 321 N TYR A 301 SHEET 1 AA7 3 VAL A 326 ILE A 329 0 SHEET 2 AA7 3 TYR A 342 ILE A 345 -1 O TYR A 342 N ILE A 329 SHEET 3 AA7 3 LEU A 348 ILE A 350 -1 O LEU A 348 N ILE A 345 SHEET 1 AA8 6 PHE A 502 ILE A 503 0 SHEET 2 AA8 6 ILE A 449 SER A 453 1 N TRP A 452 O ILE A 503 SHEET 3 AA8 6 MET A 410 ASP A 414 1 N GLN A 413 O SER A 453 SHEET 4 AA8 6 THR A 386 VAL A 389 1 N LEU A 387 O MET A 410 SHEET 5 AA8 6 LEU A 352 TRP A 357 1 N TRP A 357 O ARG A 388 SHEET 6 AA8 6 GLY A 653 TYR A 656 1 O ALA A 654 N LEU A 352 SHEET 1 AA9 2 ILE A 531 PHE A 533 0 SHEET 2 AA9 2 VAL A 552 TYR A 555 1 O GLU A 554 N PHE A 533 SHEET 1 AB1 2 ILE A 644 VAL A 645 0 SHEET 2 AB1 2 LYS A 648 GLY A 649 -1 O LYS A 648 N VAL A 645 SHEET 1 AB2 3 LEU A 691 ASP A 698 0 SHEET 2 AB2 3 VAL A 701 SER A 708 -1 O TYR A 703 N PHE A 696 SHEET 3 AB2 3 ALA A 746 PRO A 753 -1 O LEU A 749 N VAL A 704 SHEET 1 AB3 4 LEU A 734 VAL A 741 0 SHEET 2 AB3 4 HIS A 714 HIS A 724 -1 N VAL A 720 O LEU A 734 SHEET 3 AB3 4 CYS A 769 TYR A 774 -1 O SER A 772 N ARG A 721 SHEET 4 AB3 4 ASN A 786 PHE A 789 -1 O ASN A 786 N PHE A 773 SHEET 1 AB4 4 THR A 805 LYS A 811 0 SHEET 2 AB4 4 VAL A 814 GLU A 820 -1 O VAL A 816 N SER A 809 SHEET 3 AB4 4 LYS A 850 PRO A 857 -1 O LEU A 851 N LEU A 819 SHEET 4 AB4 4 GLY A 837 PHE A 839 -1 N ARG A 838 O TYR A 856 SHEET 1 AB5 3 PHE A 844 MET A 846 0 SHEET 2 AB5 3 ALA A 825 ASP A 831 -1 N ALA A 825 O MET A 846 SHEET 3 AB5 3 SER A 871 THR A 873 -1 O THR A 873 N TRP A 829 SSBOND 1 CYS A 167 CYS A 176 1555 1555 2.04 SSBOND 2 CYS A 540 CYS A 629 1555 1555 2.03 SSBOND 3 CYS A 732 CYS A 761 1555 1555 2.03 SSBOND 4 CYS A 764 CYS A 769 1555 1555 2.03 LINK ND2 ASN A 35 C1 NAG A 911 1555 1555 1.44 LINK ND2 ASN A 77 C1 NAG A 902 1555 1555 1.44 LINK ND2 ASN A 113 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 297 C1 NAG A 910 1555 1555 1.44 LINK ND2 ASN A 302 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 803 C1 NAG D 1 1555 1555 1.45 LINK O6 NAG B 1 C1 FUC B 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O6 NAG D 1 C1 FUC D 3 1555 1555 1.45 LINK O THR A 508 CA CA A 901 1555 1555 2.71 LINK OD1 ASN A 509 CA CA A 901 1555 1555 2.64 LINK O PRO A 523 CA CA A 901 1555 1555 2.47 LINK O SER A 525 CA CA A 901 1555 1555 2.79 LINK O TYR A 528 CA CA A 901 1555 1555 2.80 LINK O ASP A 530 CA CA A 901 1555 1555 2.66 CISPEP 1 VAL A 44 PRO A 45 0 -1.65 CISPEP 2 ASP A 104 THR A 105 0 0.20 CISPEP 3 PRO A 164 PRO A 165 0 -6.03 CISPEP 4 SER A 506 PRO A 507 0 3.62 CISPEP 5 TRP A 657 GLN A 658 0 -2.48 CRYST1 80.584 65.458 104.414 90.00 92.42 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012409 0.000000 0.000525 0.00000 SCALE2 0.000000 0.015277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009586 0.00000