HEADER HYDROLASE 10-MAY-18 6DDY TITLE CRYSTAL STRUCTURE OF THE DOUBLE MUTANT (D52N/K359Q) OF NT5C2-537X IN TITLE 2 THE ACTIVE STATE, NORTHEAST STRUCTURAL GENOMICS TARGET COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOLIC PURINE 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-536; COMPND 5 SYNONYM: CYTOSOLIC 5'-NUCLEOTIDASE II; COMPND 6 EC: 3.1.3.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5C2, NT5B, NT5CP, PNT5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL: ROSETTA 2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28ALIC; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLOC_NT5C2 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NORTHEAST STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, NESG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FOROUHAR,C.L.DIECK,G.TZONEVA,Z.CARPENTER,A.AMBESI-IMPIOMBATO, AUTHOR 2 M.SANCHEZ-MARTIN,R.KIRSCHNER-SCHWABE,S.LEW,J.SEETHARAMAN, AUTHOR 3 A.A.FERRANDO,L.TONG,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 11-OCT-23 6DDY 1 REMARK REVDAT 3 04-DEC-19 6DDY 1 REMARK REVDAT 2 25-JUL-18 6DDY 1 JRNL REVDAT 1 04-JUL-18 6DDY 0 JRNL AUTH C.L.DIECK,G.TZONEVA,F.FOROUHAR,Z.CARPENTER, JRNL AUTH 2 A.AMBESI-IMPIOMBATO,M.SANCHEZ-MARTIN,R.KIRSCHNER-SCHWABE, JRNL AUTH 3 S.LEW,J.SEETHARAMAN,L.TONG,A.A.FERRANDO JRNL TITL STRUCTURE AND MECHANISMS OF NT5C2 MUTATIONS DRIVING JRNL TITL 2 THIOPURINE RESISTANCE IN RELAPSED LYMPHOBLASTIC LEUKEMIA. JRNL REF CANCER CELL V. 34 136 2018 JRNL REFN ISSN 1878-3686 JRNL PMID 29990496 JRNL DOI 10.1016/J.CCELL.2018.06.003 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 69294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.110 REMARK 3 FREE R VALUE TEST SET COUNT : 7003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4394 - 5.5979 0.94 2111 256 0.1955 0.1920 REMARK 3 2 5.5979 - 4.4444 0.98 2119 238 0.1604 0.1630 REMARK 3 3 4.4444 - 3.8830 0.96 2047 248 0.1540 0.1616 REMARK 3 4 3.8830 - 3.5281 0.97 2042 231 0.1715 0.1781 REMARK 3 5 3.5281 - 3.2753 0.98 2086 237 0.1878 0.2015 REMARK 3 6 3.2753 - 3.0822 1.00 2111 221 0.1994 0.2464 REMARK 3 7 3.0822 - 2.9279 1.00 2122 236 0.1989 0.2173 REMARK 3 8 2.9279 - 2.8005 1.00 2076 252 0.1963 0.2190 REMARK 3 9 2.8005 - 2.6927 1.00 2104 224 0.1987 0.2290 REMARK 3 10 2.6927 - 2.5998 1.00 2082 246 0.1948 0.2055 REMARK 3 11 2.5998 - 2.5185 1.00 2125 211 0.1938 0.2327 REMARK 3 12 2.5185 - 2.4465 1.00 2072 252 0.1962 0.2184 REMARK 3 13 2.4465 - 2.3821 1.00 2137 201 0.1926 0.2305 REMARK 3 14 2.3821 - 2.3240 1.00 2081 222 0.1839 0.2123 REMARK 3 15 2.3240 - 2.2712 1.00 2085 231 0.1877 0.2454 REMARK 3 16 2.2712 - 2.2228 1.00 2052 250 0.1910 0.2179 REMARK 3 17 2.2228 - 2.1784 1.00 2089 242 0.1868 0.2300 REMARK 3 18 2.1784 - 2.1373 1.00 2085 230 0.1936 0.2215 REMARK 3 19 2.1373 - 2.0991 1.00 2071 253 0.1840 0.2246 REMARK 3 20 2.0991 - 2.0635 1.00 2068 228 0.1874 0.2155 REMARK 3 21 2.0635 - 2.0302 1.00 2063 234 0.1937 0.2155 REMARK 3 22 2.0302 - 1.9990 1.00 2067 249 0.1951 0.2334 REMARK 3 23 1.9990 - 1.9696 1.00 2110 215 0.2011 0.2431 REMARK 3 24 1.9696 - 1.9418 1.00 2081 234 0.2123 0.2472 REMARK 3 25 1.9418 - 1.9156 1.00 2051 234 0.2006 0.2201 REMARK 3 26 1.9156 - 1.8907 1.00 2069 233 0.1994 0.2343 REMARK 3 27 1.8907 - 1.8671 1.00 2087 239 0.2034 0.2054 REMARK 3 28 1.8671 - 1.8446 1.00 2081 213 0.2201 0.2725 REMARK 3 29 1.8446 - 1.8231 1.00 2100 213 0.2353 0.2714 REMARK 3 30 1.8231 - 1.8027 0.88 1817 230 0.2385 0.3072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3903 REMARK 3 ANGLE : 0.799 5269 REMARK 3 CHIRALITY : 0.052 558 REMARK 3 PLANARITY : 0.005 668 REMARK 3 DIHEDRAL : 14.136 2304 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 0.1863 39.0901 19.6234 REMARK 3 T TENSOR REMARK 3 T11: 0.2982 T22: 0.2597 REMARK 3 T33: 0.2670 T12: 0.0030 REMARK 3 T13: -0.0023 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.8360 L22: 0.2885 REMARK 3 L33: 0.4646 L12: -0.0560 REMARK 3 L13: 0.1338 L23: 0.0942 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: 0.0258 S13: -0.0411 REMARK 3 S21: 0.0712 S22: 0.0066 S23: 0.0134 REMARK 3 S31: 0.1074 S32: 0.0083 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69294 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.803 REMARK 200 RESOLUTION RANGE LOW (A) : 45.425 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: 6DDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.5), 20% (W/V) PEG REMARK 280 1000, 0.1 M AMMONIUM BROMIDE, 5 MM ATP, 5 MM IMP, AND 5 MM MGCL2, REMARK 280 MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.74000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.42000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.09400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.74000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.42000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.09400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.74000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.42000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.09400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.74000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.42000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.09400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 75810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 126.84000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 126.84000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 399 REMARK 465 ALA A 400 REMARK 465 GLU A 401 REMARK 465 LEU A 402 REMARK 465 TYR A 403 REMARK 465 LYS A 404 REMARK 465 HIS A 405 REMARK 465 LEU A 406 REMARK 465 ASP A 407 REMARK 465 SER A 408 REMARK 465 SER A 409 REMARK 465 SER A 410 REMARK 465 ASN A 411 REMARK 465 GLU A 412 REMARK 465 ARG A 413 REMARK 465 PRO A 414 REMARK 465 ASP A 415 REMARK 465 ILE A 416 REMARK 465 SER A 417 REMARK 465 SER A 418 REMARK 465 ILE A 419 REMARK 465 THR A 489 REMARK 465 VAL A 490 REMARK 465 GLU A 491 REMARK 465 HIS A 492 REMARK 465 THR A 493 REMARK 465 HIS A 494 REMARK 465 VAL A 495 REMARK 465 ASP A 496 REMARK 465 ILE A 497 REMARK 465 ASN A 498 REMARK 465 GLU A 499 REMARK 465 MET A 500 REMARK 465 GLU A 501 REMARK 465 SER A 502 REMARK 465 PRO A 503 REMARK 465 LEU A 504 REMARK 465 ALA A 505 REMARK 465 THR A 506 REMARK 465 ARG A 507 REMARK 465 ASN A 508 REMARK 465 ARG A 509 REMARK 465 THR A 510 REMARK 465 SER A 511 REMARK 465 VAL A 512 REMARK 465 ASP A 513 REMARK 465 PHE A 514 REMARK 465 LYS A 515 REMARK 465 ASP A 516 REMARK 465 THR A 517 REMARK 465 ASP A 518 REMARK 465 TYR A 519 REMARK 465 LYS A 520 REMARK 465 ARG A 521 REMARK 465 HIS A 522 REMARK 465 GLN A 523 REMARK 465 LEU A 524 REMARK 465 THR A 525 REMARK 465 ARG A 526 REMARK 465 SER A 527 REMARK 465 ILE A 528 REMARK 465 SER A 529 REMARK 465 GLU A 530 REMARK 465 ILE A 531 REMARK 465 LYS A 532 REMARK 465 PRO A 533 REMARK 465 PRO A 534 REMARK 465 ASN A 535 REMARK 465 LEU A 536 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 470 O HOH A 701 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 56 -72.92 -131.87 REMARK 500 ASN A 221 68.21 -150.02 REMARK 500 PRO A 267 23.12 -78.42 REMARK 500 PHE A 354 -72.96 -95.78 REMARK 500 ASP A 356 -74.04 -77.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1041 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1042 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1043 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A1044 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A1045 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A1046 DISTANCE = 7.95 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 DBREF 6DDY A 1 536 UNP P49902 5NTC_HUMAN 1 536 SEQADV 6DDY GLY A -17 UNP P49902 EXPRESSION TAG SEQADV 6DDY SER A -16 UNP P49902 EXPRESSION TAG SEQADV 6DDY SER A -15 UNP P49902 EXPRESSION TAG SEQADV 6DDY HIS A -14 UNP P49902 EXPRESSION TAG SEQADV 6DDY HIS A -13 UNP P49902 EXPRESSION TAG SEQADV 6DDY HIS A -12 UNP P49902 EXPRESSION TAG SEQADV 6DDY HIS A -11 UNP P49902 EXPRESSION TAG SEQADV 6DDY HIS A -10 UNP P49902 EXPRESSION TAG SEQADV 6DDY HIS A -9 UNP P49902 EXPRESSION TAG SEQADV 6DDY SER A -8 UNP P49902 EXPRESSION TAG SEQADV 6DDY SER A -7 UNP P49902 EXPRESSION TAG SEQADV 6DDY GLY A -6 UNP P49902 EXPRESSION TAG SEQADV 6DDY LEU A -5 UNP P49902 EXPRESSION TAG SEQADV 6DDY VAL A -4 UNP P49902 EXPRESSION TAG SEQADV 6DDY PRO A -3 UNP P49902 EXPRESSION TAG SEQADV 6DDY ARG A -2 UNP P49902 EXPRESSION TAG SEQADV 6DDY GLY A -1 UNP P49902 EXPRESSION TAG SEQADV 6DDY SER A 0 UNP P49902 EXPRESSION TAG SEQADV 6DDY ASN A 52 UNP P49902 ASP 52 ENGINEERED MUTATION SEQADV 6DDY GLN A 359 UNP P49902 LYS 359 ENGINEERED MUTATION SEQRES 1 A 554 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 554 VAL PRO ARG GLY SER MET SER THR SER TRP SER ASP ARG SEQRES 3 A 554 LEU GLN ASN ALA ALA ASP MET PRO ALA ASN MET ASP LYS SEQRES 4 A 554 HIS ALA LEU LYS LYS TYR ARG ARG GLU ALA TYR HIS ARG SEQRES 5 A 554 VAL PHE VAL ASN ARG SER LEU ALA MET GLU LYS ILE LYS SEQRES 6 A 554 CYS PHE GLY PHE ASN MET ASP TYR THR LEU ALA VAL TYR SEQRES 7 A 554 LYS SER PRO GLU TYR GLU SER LEU GLY PHE GLU LEU THR SEQRES 8 A 554 VAL GLU ARG LEU VAL SER ILE GLY TYR PRO GLN GLU LEU SEQRES 9 A 554 LEU SER PHE ALA TYR ASP SER THR PHE PRO THR ARG GLY SEQRES 10 A 554 LEU VAL PHE ASP THR LEU TYR GLY ASN LEU LEU LYS VAL SEQRES 11 A 554 ASP ALA TYR GLY ASN LEU LEU VAL CYS ALA HIS GLY PHE SEQRES 12 A 554 ASN PHE ILE ARG GLY PRO GLU THR ARG GLU GLN TYR PRO SEQRES 13 A 554 ASN LYS PHE ILE GLN ARG ASP ASP THR GLU ARG PHE TYR SEQRES 14 A 554 ILE LEU ASN THR LEU PHE ASN LEU PRO GLU THR TYR LEU SEQRES 15 A 554 LEU ALA CYS LEU VAL ASP PHE PHE THR ASN CYS PRO ARG SEQRES 16 A 554 TYR THR SER CYS GLU THR GLY PHE LYS ASP GLY ASP LEU SEQRES 17 A 554 PHE MET SER TYR ARG SER MET PHE GLN ASP VAL ARG ASP SEQRES 18 A 554 ALA VAL ASP TRP VAL HIS TYR LYS GLY SER LEU LYS GLU SEQRES 19 A 554 LYS THR VAL GLU ASN LEU GLU LYS TYR VAL VAL LYS ASP SEQRES 20 A 554 GLY LYS LEU PRO LEU LEU LEU SER ARG MET LYS GLU VAL SEQRES 21 A 554 GLY LYS VAL PHE LEU ALA THR ASN SER ASP TYR LYS TYR SEQRES 22 A 554 THR ASP LYS ILE MET THR TYR LEU PHE ASP PHE PRO HIS SEQRES 23 A 554 GLY PRO LYS PRO GLY SER SER HIS ARG PRO TRP GLN SER SEQRES 24 A 554 TYR PHE ASP LEU ILE LEU VAL ASP ALA ARG LYS PRO LEU SEQRES 25 A 554 PHE PHE GLY GLU GLY THR VAL LEU ARG GLN VAL ASP THR SEQRES 26 A 554 LYS THR GLY LYS LEU LYS ILE GLY THR TYR THR GLY PRO SEQRES 27 A 554 LEU GLN HIS GLY ILE VAL TYR SER GLY GLY SER SER ASP SEQRES 28 A 554 THR ILE CYS ASP LEU LEU GLY ALA LYS GLY LYS ASP ILE SEQRES 29 A 554 LEU TYR ILE GLY ASP HIS ILE PHE GLY ASP ILE LEU GLN SEQRES 30 A 554 SER LYS LYS ARG GLN GLY TRP ARG THR PHE LEU VAL ILE SEQRES 31 A 554 PRO GLU LEU ALA GLN GLU LEU HIS VAL TRP THR ASP LYS SEQRES 32 A 554 SER SER LEU PHE GLU GLU LEU GLN SER LEU ASP ILE PHE SEQRES 33 A 554 LEU ALA GLU LEU TYR LYS HIS LEU ASP SER SER SER ASN SEQRES 34 A 554 GLU ARG PRO ASP ILE SER SER ILE GLN ARG ARG ILE LYS SEQRES 35 A 554 LYS VAL THR HIS ASP MET ASP MET CYS TYR GLY MET MET SEQRES 36 A 554 GLY SER LEU PHE ARG SER GLY SER ARG GLN THR LEU PHE SEQRES 37 A 554 ALA SER GLN VAL MET ARG TYR ALA ASP LEU TYR ALA ALA SEQRES 38 A 554 SER PHE ILE ASN LEU LEU TYR TYR PRO PHE SER TYR LEU SEQRES 39 A 554 PHE ARG ALA ALA HIS VAL LEU MET PRO HIS GLU SER THR SEQRES 40 A 554 VAL GLU HIS THR HIS VAL ASP ILE ASN GLU MET GLU SER SEQRES 41 A 554 PRO LEU ALA THR ARG ASN ARG THR SER VAL ASP PHE LYS SEQRES 42 A 554 ASP THR ASP TYR LYS ARG HIS GLN LEU THR ARG SER ILE SEQRES 43 A 554 SER GLU ILE LYS PRO PRO ASN LEU HET PO4 A 601 5 HET GOL A 602 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 O4 P 3- FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *346(H2 O) HELIX 1 AA1 SER A 4 ASP A 14 1 11 HELIX 2 AA2 ASP A 20 GLU A 30 1 11 HELIX 3 AA3 ALA A 31 ARG A 34 5 4 HELIX 4 AA4 GLU A 44 ILE A 46 5 3 HELIX 5 AA5 PRO A 63 ILE A 80 1 18 HELIX 6 AA6 PRO A 83 PHE A 89 5 7 HELIX 7 AA7 ARG A 129 ARG A 134 1 6 HELIX 8 AA8 THR A 155 PHE A 157 5 3 HELIX 9 AA9 ASN A 158 CYS A 175 1 18 HELIX 10 AB1 TYR A 194 LYS A 211 1 18 HELIX 11 AB2 SER A 213 GLU A 220 1 8 HELIX 12 AB3 ASN A 221 VAL A 226 1 6 HELIX 13 AB4 GLY A 230 GLY A 243 1 14 HELIX 14 AB5 ASP A 252 PHE A 264 1 13 HELIX 15 AB6 PRO A 278 PHE A 283 5 6 HELIX 16 AB7 PRO A 293 GLY A 297 5 5 HELIX 17 AB8 SER A 331 GLY A 340 1 10 HELIX 18 AB9 LYS A 342 LYS A 344 5 3 HELIX 19 AC1 ASP A 356 GLY A 365 1 10 HELIX 20 AC2 GLU A 374 LYS A 385 1 12 HELIX 21 AC3 LYS A 385 PHE A 398 1 14 HELIX 22 AC4 ARG A 421 CYS A 433 1 13 HELIX 23 AC5 THR A 448 ALA A 458 1 11 HELIX 24 AC6 SER A 464 TYR A 471 5 8 HELIX 25 AC7 MET A 484 SER A 488 5 5 SHEET 1 AA1 9 PHE A 36 VAL A 37 0 SHEET 2 AA1 9 LEU A 460 ALA A 462 -1 O TYR A 461 N PHE A 36 SHEET 3 AA1 9 ARG A 367 VAL A 371 1 N LEU A 370 O LEU A 460 SHEET 4 AA1 9 ILE A 346 GLY A 350 1 N GLY A 350 O VAL A 371 SHEET 5 AA1 9 CYS A 48 PHE A 51 1 N GLY A 50 O ILE A 349 SHEET 6 AA1 9 LYS A 244 ALA A 248 1 O ALA A 248 N PHE A 51 SHEET 7 AA1 9 LEU A 285 VAL A 288 1 O LEU A 285 N LEU A 247 SHEET 8 AA1 9 TYR A 327 GLY A 329 1 O TYR A 327 N ILE A 286 SHEET 9 AA1 9 LEU A 302 GLN A 304 -1 N ARG A 303 O SER A 328 SHEET 1 AA2 2 LEU A 41 ALA A 42 0 SHEET 2 AA2 2 LEU A 476 PHE A 477 -1 O PHE A 477 N LEU A 41 SHEET 1 AA3 5 ASN A 126 PHE A 127 0 SHEET 2 AA3 5 LEU A 118 HIS A 123 -1 N HIS A 123 O ASN A 126 SHEET 3 AA3 5 ASN A 108 VAL A 112 -1 N LYS A 111 O LEU A 119 SHEET 4 AA3 5 VAL A 101 ASP A 103 -1 N ASP A 103 O ASN A 108 SHEET 5 AA3 5 PHE A 150 ILE A 152 -1 O TYR A 151 N PHE A 102 SHEET 1 AA4 3 THR A 179 SER A 180 0 SHEET 2 AA4 3 GLY A 184 ASP A 187 -1 O LYS A 186 N THR A 179 SHEET 3 AA4 3 LEU A 190 SER A 193 -1 O LEU A 190 N ASP A 187 SHEET 1 AA5 2 ARG A 442 SER A 443 0 SHEET 2 AA5 2 ARG A 446 GLN A 447 -1 O ARG A 446 N SER A 443 CISPEP 1 SER A 62 PRO A 63 0 2.15 CISPEP 2 LYS A 292 PRO A 293 0 5.71 SITE 1 AC1 6 ASN A 52 MET A 53 ASP A 54 THR A 249 SITE 2 AC1 6 ASN A 250 LYS A 292 SITE 1 AC2 6 ASP A 252 TYR A 253 VAL A 288 ASP A 289 SITE 2 AC2 6 GLY A 310 LEU A 312 CRYST1 91.480 126.840 130.188 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010931 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007681 0.00000