HEADER HYDROLASE 10-MAY-18 6DDZ TITLE CRYSTAL STRUCTURE OF THE DOUBLE MUTANT (D52N/R238W) OF NT5C2-537X IN TITLE 2 THE ACTIVE STATE, NORTHEAST STRUCTURAL GENOMICS TARGET COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOLIC PURINE 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-536; COMPND 5 SYNONYM: CYTOSOLIC 5'-NUCLEOTIDASE II; COMPND 6 EC: 3.1.3.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5C2, NT5B, NT5CP, PNT5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL: ROSETTA 2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28ALIC; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLOC_NT5C2 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NORTHEAST STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, NESG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FOROUHAR,C.L.DIECK,G.TZONEVA,Z.CARPENTER,A.AMBESI-IMPIOMBATO, AUTHOR 2 M.SANCHEZ-MARTIN,R.KIRSCHNER-SCHWABE,S.LEW,J.SEETHARAMAN, AUTHOR 3 A.A.FERRANDO,L.TONG,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 11-OCT-23 6DDZ 1 LINK REVDAT 3 04-DEC-19 6DDZ 1 REMARK REVDAT 2 25-JUL-18 6DDZ 1 JRNL REVDAT 1 04-JUL-18 6DDZ 0 JRNL AUTH C.L.DIECK,G.TZONEVA,F.FOROUHAR,Z.CARPENTER, JRNL AUTH 2 A.AMBESI-IMPIOMBATO,M.SANCHEZ-MARTIN,R.KIRSCHNER-SCHWABE, JRNL AUTH 3 S.LEW,J.SEETHARAMAN,L.TONG,A.A.FERRANDO JRNL TITL STRUCTURE AND MECHANISMS OF NT5C2 MUTATIONS DRIVING JRNL TITL 2 THIOPURINE RESISTANCE IN RELAPSED LYMPHOBLASTIC LEUKEMIA. JRNL REF CANCER CELL V. 34 136 2018 JRNL REFN ISSN 1878-3686 JRNL PMID 29990496 JRNL DOI 10.1016/J.CCELL.2018.06.003 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 54414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.060 REMARK 3 FREE R VALUE TEST SET COUNT : 5475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5875 - 6.1094 0.99 1774 198 0.1796 0.1774 REMARK 3 2 6.1094 - 4.8539 1.00 1685 200 0.1585 0.1746 REMARK 3 3 4.8539 - 4.2417 1.00 1686 178 0.1301 0.1324 REMARK 3 4 4.2417 - 3.8545 1.00 1671 201 0.1380 0.1478 REMARK 3 5 3.8545 - 3.5785 0.97 1619 180 0.1568 0.1633 REMARK 3 6 3.5785 - 3.3678 1.00 1657 182 0.1632 0.1909 REMARK 3 7 3.3678 - 3.1992 1.00 1627 183 0.1726 0.2232 REMARK 3 8 3.1992 - 3.0601 1.00 1654 210 0.1811 0.2102 REMARK 3 9 3.0601 - 2.9423 1.00 1641 190 0.1920 0.2383 REMARK 3 10 2.9423 - 2.8409 1.00 1660 175 0.1747 0.2025 REMARK 3 11 2.8409 - 2.7521 1.00 1649 193 0.1808 0.2189 REMARK 3 12 2.7521 - 2.6734 1.00 1626 179 0.1761 0.2124 REMARK 3 13 2.6734 - 2.6031 1.00 1650 184 0.1670 0.2116 REMARK 3 14 2.6031 - 2.5396 1.00 1666 179 0.1685 0.2145 REMARK 3 15 2.5396 - 2.4819 1.00 1629 173 0.1681 0.2126 REMARK 3 16 2.4819 - 2.4291 1.00 1626 201 0.1688 0.2050 REMARK 3 17 2.4291 - 2.3805 1.00 1641 160 0.1664 0.2109 REMARK 3 18 2.3805 - 2.3356 1.00 1646 196 0.1670 0.2041 REMARK 3 19 2.3356 - 2.2939 1.00 1634 196 0.1808 0.2297 REMARK 3 20 2.2939 - 2.2550 0.87 1407 176 0.3632 0.4076 REMARK 3 21 2.2550 - 2.2187 0.88 1421 149 0.4790 0.5418 REMARK 3 22 2.2187 - 2.1845 0.97 1541 206 0.2478 0.2631 REMARK 3 23 2.1845 - 2.1524 1.00 1678 173 0.1849 0.2369 REMARK 3 24 2.1524 - 2.1221 1.00 1637 171 0.1800 0.1984 REMARK 3 25 2.1221 - 2.0934 1.00 1599 194 0.1819 0.2210 REMARK 3 26 2.0934 - 2.0662 1.00 1674 167 0.1838 0.2240 REMARK 3 27 2.0662 - 2.0404 1.00 1640 176 0.1922 0.2225 REMARK 3 28 2.0404 - 2.0158 1.00 1626 157 0.1943 0.2595 REMARK 3 29 2.0158 - 1.9924 1.00 1653 177 0.1991 0.2455 REMARK 3 30 1.9924 - 1.9700 1.00 1622 171 0.2231 0.2685 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4004 REMARK 3 ANGLE : 0.844 5413 REMARK 3 CHIRALITY : 0.052 574 REMARK 3 PLANARITY : 0.005 677 REMARK 3 DIHEDRAL : 15.502 2354 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 0.1321 38.9278 19.3539 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.1511 REMARK 3 T33: 0.1611 T12: 0.0048 REMARK 3 T13: 0.0043 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.6637 L22: 0.3215 REMARK 3 L33: 0.4052 L12: -0.1202 REMARK 3 L13: 0.1143 L23: 0.0625 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: -0.0385 S13: -0.0339 REMARK 3 S21: 0.0534 S22: 0.0002 S23: 0.0186 REMARK 3 S31: 0.0540 S32: -0.0079 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54413 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 33.583 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.58800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: 6DDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% (W/V) TASCIMATE (PH 7), REMARK 280 MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.33850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.64650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.56550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.33850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.64650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.56550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.33850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.64650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.56550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.33850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.64650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.56550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 74310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 127.29300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 127.29300 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 602 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TYR A 403 REMARK 465 LYS A 404 REMARK 465 HIS A 405 REMARK 465 LEU A 406 REMARK 465 ASP A 407 REMARK 465 SER A 408 REMARK 465 SER A 409 REMARK 465 SER A 410 REMARK 465 ASN A 411 REMARK 465 GLU A 412 REMARK 465 ARG A 413 REMARK 465 PRO A 414 REMARK 465 ASP A 415 REMARK 465 THR A 489 REMARK 465 VAL A 490 REMARK 465 GLU A 491 REMARK 465 HIS A 492 REMARK 465 THR A 493 REMARK 465 HIS A 494 REMARK 465 VAL A 495 REMARK 465 ASP A 496 REMARK 465 ILE A 497 REMARK 465 ASN A 498 REMARK 465 GLU A 499 REMARK 465 MET A 500 REMARK 465 GLU A 501 REMARK 465 SER A 502 REMARK 465 PRO A 503 REMARK 465 LEU A 504 REMARK 465 ALA A 505 REMARK 465 THR A 506 REMARK 465 ARG A 507 REMARK 465 ASN A 508 REMARK 465 ARG A 509 REMARK 465 THR A 510 REMARK 465 SER A 511 REMARK 465 VAL A 512 REMARK 465 ASP A 513 REMARK 465 PHE A 514 REMARK 465 LYS A 515 REMARK 465 ASP A 516 REMARK 465 THR A 517 REMARK 465 ASP A 518 REMARK 465 TYR A 519 REMARK 465 LYS A 520 REMARK 465 ARG A 521 REMARK 465 HIS A 522 REMARK 465 GLN A 523 REMARK 465 LEU A 524 REMARK 465 THR A 525 REMARK 465 ARG A 526 REMARK 465 SER A 527 REMARK 465 ILE A 528 REMARK 465 SER A 529 REMARK 465 GLU A 530 REMARK 465 ILE A 531 REMARK 465 LYS A 532 REMARK 465 PRO A 533 REMARK 465 PRO A 534 REMARK 465 ASN A 535 REMARK 465 LEU A 536 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 749 O HOH A 1010 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 56 -69.37 -121.79 REMARK 500 PRO A 267 27.25 -79.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 52 OD1 REMARK 620 2 ASP A 54 O 84.0 REMARK 620 3 ASP A 351 OD1 91.7 85.9 REMARK 620 4 PO4 A 603 O4 100.7 124.3 148.1 REMARK 620 5 HOH A 734 O 97.3 169.2 83.3 66.1 REMARK 620 6 HOH A 843 O 167.0 88.5 77.1 92.4 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 601 O1G REMARK 620 2 ATP A 601 O1B 85.6 REMARK 620 3 ATP A 601 O1G 0.0 85.6 REMARK 620 4 ATP A 601 O1B 85.6 0.0 85.6 REMARK 620 5 HOH A 739 O 99.4 83.6 99.4 83.6 REMARK 620 6 HOH A 739 O 82.4 95.1 82.4 95.1 177.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 606 DBREF 6DDZ A 1 536 UNP P49902 5NTC_HUMAN 1 536 SEQADV 6DDZ GLY A -17 UNP P49902 EXPRESSION TAG SEQADV 6DDZ SER A -16 UNP P49902 EXPRESSION TAG SEQADV 6DDZ SER A -15 UNP P49902 EXPRESSION TAG SEQADV 6DDZ HIS A -14 UNP P49902 EXPRESSION TAG SEQADV 6DDZ HIS A -13 UNP P49902 EXPRESSION TAG SEQADV 6DDZ HIS A -12 UNP P49902 EXPRESSION TAG SEQADV 6DDZ HIS A -11 UNP P49902 EXPRESSION TAG SEQADV 6DDZ HIS A -10 UNP P49902 EXPRESSION TAG SEQADV 6DDZ HIS A -9 UNP P49902 EXPRESSION TAG SEQADV 6DDZ SER A -8 UNP P49902 EXPRESSION TAG SEQADV 6DDZ SER A -7 UNP P49902 EXPRESSION TAG SEQADV 6DDZ GLY A -6 UNP P49902 EXPRESSION TAG SEQADV 6DDZ LEU A -5 UNP P49902 EXPRESSION TAG SEQADV 6DDZ VAL A -4 UNP P49902 EXPRESSION TAG SEQADV 6DDZ PRO A -3 UNP P49902 EXPRESSION TAG SEQADV 6DDZ ARG A -2 UNP P49902 EXPRESSION TAG SEQADV 6DDZ GLY A -1 UNP P49902 EXPRESSION TAG SEQADV 6DDZ SER A 0 UNP P49902 EXPRESSION TAG SEQADV 6DDZ ASN A 52 UNP P49902 ASP 52 ENGINEERED MUTATION SEQADV 6DDZ TRP A 238 UNP P49902 ARG 238 ENGINEERED MUTATION SEQRES 1 A 554 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 554 VAL PRO ARG GLY SER MET SER THR SER TRP SER ASP ARG SEQRES 3 A 554 LEU GLN ASN ALA ALA ASP MET PRO ALA ASN MET ASP LYS SEQRES 4 A 554 HIS ALA LEU LYS LYS TYR ARG ARG GLU ALA TYR HIS ARG SEQRES 5 A 554 VAL PHE VAL ASN ARG SER LEU ALA MET GLU LYS ILE LYS SEQRES 6 A 554 CYS PHE GLY PHE ASN MET ASP TYR THR LEU ALA VAL TYR SEQRES 7 A 554 LYS SER PRO GLU TYR GLU SER LEU GLY PHE GLU LEU THR SEQRES 8 A 554 VAL GLU ARG LEU VAL SER ILE GLY TYR PRO GLN GLU LEU SEQRES 9 A 554 LEU SER PHE ALA TYR ASP SER THR PHE PRO THR ARG GLY SEQRES 10 A 554 LEU VAL PHE ASP THR LEU TYR GLY ASN LEU LEU LYS VAL SEQRES 11 A 554 ASP ALA TYR GLY ASN LEU LEU VAL CYS ALA HIS GLY PHE SEQRES 12 A 554 ASN PHE ILE ARG GLY PRO GLU THR ARG GLU GLN TYR PRO SEQRES 13 A 554 ASN LYS PHE ILE GLN ARG ASP ASP THR GLU ARG PHE TYR SEQRES 14 A 554 ILE LEU ASN THR LEU PHE ASN LEU PRO GLU THR TYR LEU SEQRES 15 A 554 LEU ALA CYS LEU VAL ASP PHE PHE THR ASN CYS PRO ARG SEQRES 16 A 554 TYR THR SER CYS GLU THR GLY PHE LYS ASP GLY ASP LEU SEQRES 17 A 554 PHE MET SER TYR ARG SER MET PHE GLN ASP VAL ARG ASP SEQRES 18 A 554 ALA VAL ASP TRP VAL HIS TYR LYS GLY SER LEU LYS GLU SEQRES 19 A 554 LYS THR VAL GLU ASN LEU GLU LYS TYR VAL VAL LYS ASP SEQRES 20 A 554 GLY LYS LEU PRO LEU LEU LEU SER TRP MET LYS GLU VAL SEQRES 21 A 554 GLY LYS VAL PHE LEU ALA THR ASN SER ASP TYR LYS TYR SEQRES 22 A 554 THR ASP LYS ILE MET THR TYR LEU PHE ASP PHE PRO HIS SEQRES 23 A 554 GLY PRO LYS PRO GLY SER SER HIS ARG PRO TRP GLN SER SEQRES 24 A 554 TYR PHE ASP LEU ILE LEU VAL ASP ALA ARG LYS PRO LEU SEQRES 25 A 554 PHE PHE GLY GLU GLY THR VAL LEU ARG GLN VAL ASP THR SEQRES 26 A 554 LYS THR GLY LYS LEU LYS ILE GLY THR TYR THR GLY PRO SEQRES 27 A 554 LEU GLN HIS GLY ILE VAL TYR SER GLY GLY SER SER ASP SEQRES 28 A 554 THR ILE CYS ASP LEU LEU GLY ALA LYS GLY LYS ASP ILE SEQRES 29 A 554 LEU TYR ILE GLY ASP HIS ILE PHE GLY ASP ILE LEU LYS SEQRES 30 A 554 SER LYS LYS ARG GLN GLY TRP ARG THR PHE LEU VAL ILE SEQRES 31 A 554 PRO GLU LEU ALA GLN GLU LEU HIS VAL TRP THR ASP LYS SEQRES 32 A 554 SER SER LEU PHE GLU GLU LEU GLN SER LEU ASP ILE PHE SEQRES 33 A 554 LEU ALA GLU LEU TYR LYS HIS LEU ASP SER SER SER ASN SEQRES 34 A 554 GLU ARG PRO ASP ILE SER SER ILE GLN ARG ARG ILE LYS SEQRES 35 A 554 LYS VAL THR HIS ASP MET ASP MET CYS TYR GLY MET MET SEQRES 36 A 554 GLY SER LEU PHE ARG SER GLY SER ARG GLN THR LEU PHE SEQRES 37 A 554 ALA SER GLN VAL MET ARG TYR ALA ASP LEU TYR ALA ALA SEQRES 38 A 554 SER PHE ILE ASN LEU LEU TYR TYR PRO PHE SER TYR LEU SEQRES 39 A 554 PHE ARG ALA ALA HIS VAL LEU MET PRO HIS GLU SER THR SEQRES 40 A 554 VAL GLU HIS THR HIS VAL ASP ILE ASN GLU MET GLU SER SEQRES 41 A 554 PRO LEU ALA THR ARG ASN ARG THR SER VAL ASP PHE LYS SEQRES 42 A 554 ASP THR ASP TYR LYS ARG HIS GLN LEU THR ARG SER ILE SEQRES 43 A 554 SER GLU ILE LYS PRO PRO ASN LEU HET ATP A 601 31 HET MG A 602 1 HET PO4 A 603 5 HET MG A 604 1 HET GOL A 605 6 HET GOL A 606 6 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG 2(MG 2+) FORMUL 4 PO4 O4 P 3- FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *342(H2 O) HELIX 1 AA1 SER A 4 ASP A 14 1 11 HELIX 2 AA2 ASP A 20 ARG A 28 1 9 HELIX 3 AA3 GLU A 30 ARG A 34 5 5 HELIX 4 AA4 GLU A 44 ILE A 46 5 3 HELIX 5 AA5 PRO A 63 GLY A 81 1 19 HELIX 6 AA6 PRO A 83 PHE A 89 5 7 HELIX 7 AA7 ARG A 129 ARG A 134 1 6 HELIX 8 AA8 THR A 155 PHE A 157 5 3 HELIX 9 AA9 ASN A 158 CYS A 175 1 18 HELIX 10 AB1 TYR A 194 LYS A 211 1 18 HELIX 11 AB2 SER A 213 GLU A 220 1 8 HELIX 12 AB3 ASN A 221 VAL A 226 1 6 HELIX 13 AB4 GLY A 230 GLY A 243 1 14 HELIX 14 AB5 ASP A 252 PHE A 264 1 13 HELIX 15 AB6 PRO A 278 PHE A 283 5 6 HELIX 16 AB7 PRO A 293 GLY A 297 5 5 HELIX 17 AB8 SER A 331 GLY A 340 1 10 HELIX 18 AB9 LYS A 342 LYS A 344 5 3 HELIX 19 AC1 ASP A 356 GLY A 365 1 10 HELIX 20 AC2 GLU A 374 LYS A 385 1 12 HELIX 21 AC3 LYS A 385 ALA A 400 1 16 HELIX 22 AC4 SER A 417 CYS A 433 1 17 HELIX 23 AC5 THR A 448 ALA A 458 1 11 HELIX 24 AC6 SER A 464 TYR A 471 5 8 HELIX 25 AC7 MET A 484 SER A 488 5 5 SHEET 1 AA1 9 PHE A 36 VAL A 37 0 SHEET 2 AA1 9 LEU A 460 ALA A 462 -1 O TYR A 461 N PHE A 36 SHEET 3 AA1 9 ARG A 367 VAL A 371 1 N LEU A 370 O LEU A 460 SHEET 4 AA1 9 ILE A 346 GLY A 350 1 N GLY A 350 O VAL A 371 SHEET 5 AA1 9 CYS A 48 PHE A 51 1 N GLY A 50 O ILE A 349 SHEET 6 AA1 9 LYS A 244 ALA A 248 1 O LYS A 244 N PHE A 49 SHEET 7 AA1 9 LEU A 285 VAL A 288 1 O LEU A 285 N LEU A 247 SHEET 8 AA1 9 TYR A 327 GLY A 329 1 O TYR A 327 N VAL A 288 SHEET 9 AA1 9 LEU A 302 GLN A 304 -1 N ARG A 303 O SER A 328 SHEET 1 AA2 2 LEU A 41 ALA A 42 0 SHEET 2 AA2 2 LEU A 476 PHE A 477 -1 O PHE A 477 N LEU A 41 SHEET 1 AA3 5 ASN A 126 PHE A 127 0 SHEET 2 AA3 5 LEU A 118 HIS A 123 -1 N HIS A 123 O ASN A 126 SHEET 3 AA3 5 ASN A 108 VAL A 112 -1 N LYS A 111 O LEU A 119 SHEET 4 AA3 5 VAL A 101 ASP A 103 -1 N VAL A 101 O LEU A 110 SHEET 5 AA3 5 PHE A 150 ILE A 152 -1 O TYR A 151 N PHE A 102 SHEET 1 AA4 3 THR A 179 SER A 180 0 SHEET 2 AA4 3 GLY A 184 ASP A 187 -1 O LYS A 186 N THR A 179 SHEET 3 AA4 3 LEU A 190 SER A 193 -1 O LEU A 190 N ASP A 187 SHEET 1 AA5 2 ARG A 442 SER A 443 0 SHEET 2 AA5 2 ARG A 446 GLN A 447 -1 O ARG A 446 N SER A 443 LINK OD1 ASN A 52 MG MG A 604 1555 1555 1.95 LINK O ASP A 54 MG MG A 604 1555 1555 2.30 LINK OD1 ASP A 351 MG MG A 604 1555 1555 2.31 LINK O1G ATP A 601 MG MG A 602 1555 1555 2.05 LINK O1B ATP A 601 MG MG A 602 1555 1555 2.03 LINK O1G ATP A 601 MG MG A 602 1555 3555 2.05 LINK O1B ATP A 601 MG MG A 602 1555 3555 2.03 LINK MG MG A 602 O HOH A 739 1555 1555 2.12 LINK MG MG A 602 O HOH A 739 1555 3555 2.13 LINK O4 PO4 A 603 MG MG A 604 1555 1555 1.93 LINK MG MG A 604 O HOH A 734 1555 1555 2.77 LINK MG MG A 604 O HOH A 843 1555 1555 2.20 CISPEP 1 SER A 62 PRO A 63 0 5.99 CISPEP 2 LYS A 292 PRO A 293 0 4.82 SITE 1 AC1 13 ARG A 144 ASP A 145 ASN A 154 PHE A 354 SITE 2 AC1 13 LYS A 362 GLN A 453 ARG A 456 TYR A 457 SITE 3 AC1 13 MG A 602 HOH A 739 HOH A 752 HOH A 853 SITE 4 AC1 13 HOH A 944 SITE 1 AC2 2 ATP A 601 HOH A 739 SITE 1 AC3 10 ASN A 52 MET A 53 ASP A 54 THR A 249 SITE 2 AC3 10 ASN A 250 LYS A 292 MG A 604 HOH A 734 SITE 3 AC3 10 HOH A 736 HOH A 843 SITE 1 AC4 6 ASN A 52 ASP A 54 ASP A 351 PO4 A 603 SITE 2 AC4 6 HOH A 734 HOH A 843 SITE 1 AC5 6 ASP A 252 TYR A 253 VAL A 288 ASP A 289 SITE 2 AC5 6 GLY A 310 LEU A 312 SITE 1 AC6 8 PHE A 283 ASP A 284 LEU A 321 GLN A 322 SITE 2 AC6 8 HIS A 323 GLY A 324 ILE A 325 HOH A 708 CRYST1 92.677 127.293 131.131 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010790 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007626 0.00000