HEADER DNA BINDING PROTEIN/DNA 14-MAY-18 6DF8 TITLE KAISO (ZBTB33) ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH THE TITLE 2 SPECIFIC KAISO BINDING SEQUENCE (KBS), PH 6.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR KAISO; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 471-604; COMPND 5 SYNONYM: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 33; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*TP*GP*CP*TP*TP*CP*CP*TP*GP*CP*CP*AP*AP*TP*AP*AP*CP*G)-3'); COMPND 10 CHAIN: D; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*CP*GP*TP*TP*AP*TP*TP*GP*GP*CP*AP*GP*GP*AP*AP*GP*CP*A)-3'); COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZBTB33, KAISO, ZNF348; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) [DNAY]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606 KEYWDS DNA METHYLATION, ZINC FINGER, TRANSCRIPTIONAL REGULATOR, DNA BINDING KEYWDS 2 PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.N.NIKOLOVA,R.L.STANFIELD,H.J.DYSON,P.E.WRIGHT REVDAT 4 11-OCT-23 6DF8 1 REMARK REVDAT 3 23-MAR-22 6DF8 1 REMARK REVDAT 2 13-MAY-20 6DF8 1 JRNL REVDAT 1 22-MAY-19 6DF8 0 JRNL AUTH E.N.NIKOLOVA,R.L.STANFIELD,H.J.DYSON,P.E.WRIGHT JRNL TITL A CONFORMATIONAL SWITCH IN THE ZINC FINGER PROTEIN KAISO JRNL TITL 2 MEDIATES DIFFERENTIAL READOUT OF SPECIFIC AND METHYLATED DNA JRNL TITL 3 SEQUENCES. JRNL REF BIOCHEMISTRY 2020 JRNL REFN ISSN 0006-2960 JRNL PMID 32352758 JRNL DOI 10.1021/ACS.BIOCHEM.0C00253 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 14547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1442 - 5.4597 0.99 1424 159 0.1475 0.1736 REMARK 3 2 5.4597 - 4.3348 1.00 1349 149 0.1444 0.1914 REMARK 3 3 4.3348 - 3.7873 1.00 1326 147 0.1468 0.1960 REMARK 3 4 3.7873 - 3.4411 1.00 1316 146 0.1766 0.2258 REMARK 3 5 3.4411 - 3.1946 1.00 1326 148 0.1969 0.2490 REMARK 3 6 3.1946 - 3.0063 1.00 1317 147 0.2156 0.2464 REMARK 3 7 3.0063 - 2.8558 1.00 1307 144 0.2660 0.3226 REMARK 3 8 2.8558 - 2.7315 1.00 1313 146 0.3002 0.4046 REMARK 3 9 2.7315 - 2.6263 1.00 1276 140 0.3172 0.3593 REMARK 3 10 2.6263 - 2.5357 0.87 1141 126 0.3269 0.3462 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1882 REMARK 3 ANGLE : 1.214 2672 REMARK 3 CHIRALITY : 0.051 281 REMARK 3 PLANARITY : 0.005 211 REMARK 3 DIHEDRAL : 26.234 740 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 482 THROUGH 488 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3862 187.4518 129.8553 REMARK 3 T TENSOR REMARK 3 T11: 1.5304 T22: 0.4623 REMARK 3 T33: 1.4248 T12: -0.0924 REMARK 3 T13: 0.0438 T23: 0.1158 REMARK 3 L TENSOR REMARK 3 L11: 6.4872 L22: 5.0136 REMARK 3 L33: 8.0847 L12: 4.7189 REMARK 3 L13: -1.8798 L23: -4.8282 REMARK 3 S TENSOR REMARK 3 S11: -1.5557 S12: 0.4071 S13: -1.2115 REMARK 3 S21: 0.7559 S22: 0.2700 S23: -0.3243 REMARK 3 S31: 0.7073 S32: 0.5149 S33: 1.2695 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 489 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4372 191.1500 129.2935 REMARK 3 T TENSOR REMARK 3 T11: 1.3227 T22: 0.4967 REMARK 3 T33: 1.2350 T12: 0.0468 REMARK 3 T13: 0.0592 T23: 0.0515 REMARK 3 L TENSOR REMARK 3 L11: 7.4163 L22: 9.0278 REMARK 3 L33: 8.1839 L12: 7.3557 REMARK 3 L13: 1.2974 L23: 4.7738 REMARK 3 S TENSOR REMARK 3 S11: -0.6059 S12: -0.1914 S13: -1.0993 REMARK 3 S21: -0.3715 S22: -0.0123 S23: -0.9072 REMARK 3 S31: -0.1522 S32: -0.7854 S33: 0.5537 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 497 THROUGH 517 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2251 196.1611 133.7612 REMARK 3 T TENSOR REMARK 3 T11: 0.9074 T22: 0.4753 REMARK 3 T33: 1.2710 T12: 0.0212 REMARK 3 T13: 0.0813 T23: 0.0614 REMARK 3 L TENSOR REMARK 3 L11: 7.8557 L22: 7.2339 REMARK 3 L33: 4.3035 L12: 3.5880 REMARK 3 L13: 3.9314 L23: 4.3412 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: -0.2497 S13: -1.7799 REMARK 3 S21: -0.0684 S22: 0.3722 S23: -0.6768 REMARK 3 S31: 0.7176 S32: 0.1698 S33: -0.4392 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 518 THROUGH 522 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8748 202.4060 133.9450 REMARK 3 T TENSOR REMARK 3 T11: 0.9563 T22: 0.6810 REMARK 3 T33: 2.0300 T12: 0.0351 REMARK 3 T13: -0.1259 T23: -0.0536 REMARK 3 L TENSOR REMARK 3 L11: 7.0607 L22: 4.8803 REMARK 3 L33: 3.7723 L12: -4.0323 REMARK 3 L13: -2.8535 L23: -0.9675 REMARK 3 S TENSOR REMARK 3 S11: 0.3575 S12: 0.7919 S13: -2.4870 REMARK 3 S21: 1.9719 S22: 0.9505 S23: 0.6129 REMARK 3 S31: 1.7489 S32: -0.6027 S33: -1.3824 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 523 THROUGH 533 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4549 212.6474 138.2553 REMARK 3 T TENSOR REMARK 3 T11: 0.8972 T22: 0.6992 REMARK 3 T33: 1.8739 T12: 0.0185 REMARK 3 T13: -0.1357 T23: 0.2292 REMARK 3 L TENSOR REMARK 3 L11: 5.6158 L22: 5.5327 REMARK 3 L33: 8.9110 L12: 5.2709 REMARK 3 L13: 2.1456 L23: 4.1915 REMARK 3 S TENSOR REMARK 3 S11: -0.1611 S12: -0.5371 S13: -1.3190 REMARK 3 S21: 0.4782 S22: -0.2742 S23: -3.8896 REMARK 3 S31: -0.4683 S32: 0.5404 S33: 0.4150 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 534 THROUGH 545 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3327 216.2732 136.4716 REMARK 3 T TENSOR REMARK 3 T11: 0.7597 T22: 0.4921 REMARK 3 T33: 1.1746 T12: 0.0238 REMARK 3 T13: -0.0495 T23: 0.0675 REMARK 3 L TENSOR REMARK 3 L11: 5.6270 L22: 4.0214 REMARK 3 L33: 5.7549 L12: 4.7566 REMARK 3 L13: -3.0545 L23: -2.6738 REMARK 3 S TENSOR REMARK 3 S11: -0.8335 S12: -0.3089 S13: -0.1223 REMARK 3 S21: 0.2360 S22: 0.7817 S23: -0.6636 REMARK 3 S31: 0.5671 S32: 0.2625 S33: 0.0554 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 546 THROUGH 552 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4056 226.6985 134.4523 REMARK 3 T TENSOR REMARK 3 T11: 0.4957 T22: 0.5957 REMARK 3 T33: 0.8771 T12: -0.1617 REMARK 3 T13: 0.0500 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 3.4496 L22: 8.0714 REMARK 3 L33: 4.4540 L12: -5.2793 REMARK 3 L13: 3.6075 L23: -5.4519 REMARK 3 S TENSOR REMARK 3 S11: -1.0730 S12: 0.6546 S13: -0.6956 REMARK 3 S21: 0.6629 S22: 0.0258 S23: 0.2366 REMARK 3 S31: -0.2669 S32: 0.8032 S33: 1.0526 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 553 THROUGH 586 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2607 224.9835 136.7760 REMARK 3 T TENSOR REMARK 3 T11: 0.5212 T22: 0.3590 REMARK 3 T33: 0.7866 T12: -0.1081 REMARK 3 T13: -0.0281 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 8.1030 L22: 6.3793 REMARK 3 L33: 8.3736 L12: -6.3174 REMARK 3 L13: -3.4172 L23: -0.1140 REMARK 3 S TENSOR REMARK 3 S11: 0.0739 S12: 0.1192 S13: -0.3184 REMARK 3 S21: -0.2240 S22: 0.0201 S23: 0.6390 REMARK 3 S31: 0.3835 S32: -0.4775 S33: -0.0602 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 587 THROUGH 599) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2437 221.6215 125.3211 REMARK 3 T TENSOR REMARK 3 T11: 1.1771 T22: 0.6586 REMARK 3 T33: 1.0530 T12: -0.2107 REMARK 3 T13: 0.1132 T23: -0.0909 REMARK 3 L TENSOR REMARK 3 L11: 7.7335 L22: 3.9191 REMARK 3 L33: 7.8797 L12: -4.4054 REMARK 3 L13: 1.2055 L23: 2.5499 REMARK 3 S TENSOR REMARK 3 S11: 0.3515 S12: 0.8578 S13: -0.2760 REMARK 3 S21: -1.3442 S22: -0.0078 S23: -0.2070 REMARK 3 S31: 1.7719 S32: -0.4399 S33: -0.3150 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0806 209.0547 129.6735 REMARK 3 T TENSOR REMARK 3 T11: 0.7791 T22: 0.4497 REMARK 3 T33: 0.9222 T12: -0.1215 REMARK 3 T13: 0.0860 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 5.5622 L22: 7.2161 REMARK 3 L33: 7.9330 L12: -0.0253 REMARK 3 L13: 0.3736 L23: -3.1088 REMARK 3 S TENSOR REMARK 3 S11: -0.2049 S12: 0.4605 S13: -0.2337 REMARK 3 S21: -0.2774 S22: 0.1994 S23: -0.9245 REMARK 3 S31: 0.2547 S32: 0.6603 S33: -0.0108 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 19 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3218 208.0184 129.2440 REMARK 3 T TENSOR REMARK 3 T11: 0.8608 T22: 0.3241 REMARK 3 T33: 0.8805 T12: -0.0853 REMARK 3 T13: 0.0764 T23: -0.0823 REMARK 3 L TENSOR REMARK 3 L11: 8.6423 L22: 7.3554 REMARK 3 L33: 6.0528 L12: -1.3126 REMARK 3 L13: -0.8054 L23: 0.5207 REMARK 3 S TENSOR REMARK 3 S11: -0.2573 S12: 0.8242 S13: -0.5523 REMARK 3 S21: -0.1924 S22: 0.2338 S23: -0.7490 REMARK 3 S31: 1.1812 S32: -0.1105 S33: 0.0494 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DF8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000230576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03316 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14573 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.536 REMARK 200 RESOLUTION RANGE LOW (A) : 43.138 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.9_1692 REMARK 200 STARTING MODEL: 4F6M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DISODIUM TARTRATE, 20 % PEG REMARK 280 3350, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.18550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 92.13350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.18550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 92.13350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.18550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 92.13350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.18550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 92.13350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 471 REMARK 465 ALA A 472 REMARK 465 ASN A 473 REMARK 465 LYS A 474 REMARK 465 ARG A 475 REMARK 465 MET A 476 REMARK 465 LYS A 477 REMARK 465 VAL A 478 REMARK 465 LYS A 479 REMARK 465 HIS A 480 REMARK 465 ASP A 481 REMARK 465 LEU A 600 REMARK 465 SER A 601 REMARK 465 ASP A 602 REMARK 465 ARG A 603 REMARK 465 SER A 604 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG E 26 O3' DG E 26 C3' -0.055 REMARK 500 DG E 30 O3' DG E 30 C3' -0.052 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 30 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 527 -160.19 -161.18 REMARK 500 CYS A 555 -0.73 -145.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 496 SG REMARK 620 2 CYS A 499 SG 115.2 REMARK 620 3 HIS A 512 NE2 108.0 101.0 REMARK 620 4 HIS A 516 NE2 110.9 109.9 111.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 524 SG REMARK 620 2 CYS A 527 SG 111.1 REMARK 620 3 HIS A 540 NE2 111.4 109.2 REMARK 620 4 HIS A 544 NE2 108.5 117.2 98.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 552 SG REMARK 620 2 CYS A 555 SG 112.8 REMARK 620 3 HIS A 568 NE2 110.9 108.3 REMARK 620 4 HIS A 573 NE2 100.7 118.9 104.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6DF5 RELATED DB: PDB DBREF 6DF8 A 471 604 UNP Q86T24 KAISO_HUMAN 471 604 DBREF 6DF8 D 1 18 PDB 6DF8 6DF8 1 18 DBREF 6DF8 E 19 36 PDB 6DF8 6DF8 19 36 SEQRES 1 A 134 MET ALA ASN LYS ARG MET LYS VAL LYS HIS ASP ASP HIS SEQRES 2 A 134 TYR GLU LEU ILE VAL ASP GLY ARG VAL TYR TYR ILE CYS SEQRES 3 A 134 ILE VAL CYS LYS ARG SER TYR VAL CYS LEU THR SER LEU SEQRES 4 A 134 ARG ARG HIS PHE ASN ILE HIS SER TRP GLU LYS LYS TYR SEQRES 5 A 134 PRO CYS ARG TYR CYS GLU LYS VAL PHE PRO LEU ALA GLU SEQRES 6 A 134 TYR ARG THR LYS HIS GLU ILE HIS HIS THR GLY GLU ARG SEQRES 7 A 134 ARG TYR GLN CYS LEU ALA CYS GLY LYS SER PHE ILE ASN SEQRES 8 A 134 TYR GLN PHE MET SER SER HIS ILE LYS SER VAL HIS SER SEQRES 9 A 134 GLN ASP PRO SER GLY ASP SER LYS LEU TYR ARG LEU HIS SEQRES 10 A 134 PRO CYS ARG SER LEU GLN ILE ARG GLN TYR ALA TYR LEU SEQRES 11 A 134 SER ASP ARG SER SEQRES 1 D 18 DT DG DC DT DT DC DC DT DG DC DC DA DA SEQRES 2 D 18 DT DA DA DC DG SEQRES 1 E 18 DC DG DT DT DA DT DT DG DG DC DA DG DG SEQRES 2 E 18 DA DA DG DC DA HET ZN A 701 1 HET ZN A 702 1 HET ZN A 703 1 HET CL A 704 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 4 ZN 3(ZN 2+) FORMUL 7 CL CL 1- FORMUL 8 HOH *9(H2 O) HELIX 1 AA1 CYS A 505 TRP A 518 1 14 HELIX 2 AA2 LEU A 533 GLY A 546 1 14 HELIX 3 AA3 ASN A 561 SER A 574 1 14 SHEET 1 AA1 3 HIS A 483 VAL A 488 0 SHEET 2 AA1 3 ARG A 491 CYS A 496 -1 O TYR A 493 N LEU A 486 SHEET 3 AA1 3 SER A 502 TYR A 503 -1 O TYR A 503 N TYR A 494 SHEET 1 AA2 2 TYR A 522 PRO A 523 0 SHEET 2 AA2 2 VAL A 530 PHE A 531 -1 O PHE A 531 N TYR A 522 SHEET 1 AA3 3 SER A 558 PHE A 559 0 SHEET 2 AA3 3 TYR A 550 CYS A 552 -1 N TYR A 550 O PHE A 559 SHEET 3 AA3 3 TYR A 584 LEU A 586 -1 O ARG A 585 N GLN A 551 LINK SG CYS A 496 ZN ZN A 701 1555 1555 2.24 LINK SG CYS A 499 ZN ZN A 701 1555 1555 2.13 LINK NE2 HIS A 512 ZN ZN A 701 1555 1555 2.08 LINK NE2 HIS A 516 ZN ZN A 701 1555 1555 1.98 LINK SG CYS A 524 ZN ZN A 702 1555 1555 2.32 LINK SG CYS A 527 ZN ZN A 702 1555 1555 2.29 LINK NE2 HIS A 540 ZN ZN A 702 1555 1555 2.06 LINK NE2 HIS A 544 ZN ZN A 702 1555 1555 2.14 LINK SG CYS A 552 ZN ZN A 703 1555 1555 2.34 LINK SG CYS A 555 ZN ZN A 703 1555 1555 2.39 LINK NE2 HIS A 568 ZN ZN A 703 1555 1555 2.03 LINK NE2 HIS A 573 ZN ZN A 703 1555 1555 2.08 SITE 1 AC1 4 CYS A 496 CYS A 499 HIS A 512 HIS A 516 SITE 1 AC2 4 CYS A 524 CYS A 527 HIS A 540 HIS A 544 SITE 1 AC3 4 CYS A 552 CYS A 555 HIS A 568 HIS A 573 SITE 1 AC4 3 GLU A 547 ARG A 548 ARG A 590 CRYST1 44.371 184.267 104.938 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022537 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005427 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009529 0.00000