HEADER DNA BINDING PROTEIN/DNA 14-MAY-18 6DF9 TITLE KAISO (ZBTB33) E535Q ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH TITLE 2 THE SPECIFIC KAISO BINDING SEQUENCE (KBS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR KAISO; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 471-604; COMPND 5 SYNONYM: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 33; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*TP*GP*CP*TP*TP*CP*CP*TP*GP*CP*CP*AP*AP*TP*AP*AP*CP*G)-3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*CP*GP*TP*TP*AP*TP*TP*GP*GP*CP*AP*GP*GP*AP*AP*GP*CP*A)-3'); COMPND 16 CHAIN: E; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZBTB33, KAISO, ZNF348; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) [DNAY]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606 KEYWDS DNA METHYLATION, ZINC FINGER, TRANSCRIPTIONAL REGULATOR, DNA BINDING KEYWDS 2 PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.N.NIKOLOVA,R.L.STANFIELD,H.J.DYSON,P.E.WRIGHT REVDAT 4 11-OCT-23 6DF9 1 REMARK REVDAT 3 23-MAR-22 6DF9 1 REMARK REVDAT 2 13-MAY-20 6DF9 1 JRNL REVDAT 1 22-MAY-19 6DF9 0 JRNL AUTH E.N.NIKOLOVA,R.L.STANFIELD,H.J.DYSON,P.E.WRIGHT JRNL TITL A CONFORMATIONAL SWITCH IN THE ZINC FINGER PROTEIN KAISO JRNL TITL 2 MEDIATES DIFFERENTIAL READOUT OF SPECIFIC AND METHYLATED DNA JRNL TITL 3 SEQUENCES. JRNL REF BIOCHEMISTRY 2020 JRNL REFN ISSN 0006-2960 JRNL PMID 32352758 JRNL DOI 10.1021/ACS.BIOCHEM.0C00253 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 18785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2052 - 5.4494 1.00 1439 160 0.1522 0.1927 REMARK 3 2 5.4494 - 4.3267 0.99 1356 151 0.1412 0.1827 REMARK 3 3 4.3267 - 3.7801 1.00 1331 148 0.1485 0.1766 REMARK 3 4 3.7801 - 3.4346 1.00 1332 148 0.1637 0.2161 REMARK 3 5 3.4346 - 3.1886 0.99 1323 147 0.1843 0.2723 REMARK 3 6 3.1886 - 3.0006 0.99 1315 146 0.1923 0.2121 REMARK 3 7 3.0006 - 2.8504 0.99 1326 147 0.2141 0.2707 REMARK 3 8 2.8504 - 2.7263 1.00 1318 146 0.2116 0.2894 REMARK 3 9 2.7263 - 2.6214 1.00 1278 142 0.2334 0.2688 REMARK 3 10 2.6214 - 2.5309 1.00 1338 148 0.2221 0.2944 REMARK 3 11 2.5309 - 2.4518 0.98 1273 142 0.2384 0.3068 REMARK 3 12 2.4518 - 2.3817 0.95 1254 140 0.2390 0.2949 REMARK 3 13 2.3817 - 2.3190 0.79 1023 114 0.2460 0.2785 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1898 REMARK 3 ANGLE : 1.015 2693 REMARK 3 CHIRALITY : 0.045 283 REMARK 3 PLANARITY : 0.005 215 REMARK 3 DIHEDRAL : 25.645 749 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 482 THROUGH 517 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6329 -8.8843 27.1007 REMARK 3 T TENSOR REMARK 3 T11: 0.8081 T22: 0.3578 REMARK 3 T33: 0.9666 T12: 0.0136 REMARK 3 T13: -0.0575 T23: -0.0653 REMARK 3 L TENSOR REMARK 3 L11: 6.1353 L22: 5.5214 REMARK 3 L33: 6.5950 L12: 4.6144 REMARK 3 L13: -3.7215 L23: -3.1572 REMARK 3 S TENSOR REMARK 3 S11: 0.2574 S12: -0.1976 S13: 0.9160 REMARK 3 S21: -0.1867 S22: 0.0811 S23: 0.5055 REMARK 3 S31: -1.0474 S32: 0.0658 S33: -0.3924 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 518 THROUGH 527 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0940 -24.4109 30.6400 REMARK 3 T TENSOR REMARK 3 T11: 0.7212 T22: 0.5734 REMARK 3 T33: 1.7320 T12: 0.0326 REMARK 3 T13: 0.1761 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 4.7984 L22: 4.7477 REMARK 3 L33: 4.1678 L12: -2.9594 REMARK 3 L13: 1.5684 L23: -4.2053 REMARK 3 S TENSOR REMARK 3 S11: 0.3340 S12: -0.0225 S13: 1.4111 REMARK 3 S21: 0.4731 S22: 0.0499 S23: 2.8942 REMARK 3 S31: -0.3996 S32: -0.0710 S33: -0.5033 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 528 THROUGH 545 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6526 -29.5108 32.9467 REMARK 3 T TENSOR REMARK 3 T11: 0.5441 T22: 0.4620 REMARK 3 T33: 0.9638 T12: 0.0741 REMARK 3 T13: 0.1245 T23: -0.0634 REMARK 3 L TENSOR REMARK 3 L11: 8.2713 L22: 7.7529 REMARK 3 L33: 7.1840 L12: 4.2271 REMARK 3 L13: 2.7768 L23: -3.5722 REMARK 3 S TENSOR REMARK 3 S11: -0.4697 S12: -0.5098 S13: 0.2679 REMARK 3 S21: 1.0255 S22: 0.9333 S23: 1.9035 REMARK 3 S31: -0.6073 S32: -0.7190 S33: -0.3455 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 546 THROUGH 552 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4033 -42.1729 30.0720 REMARK 3 T TENSOR REMARK 3 T11: 0.3026 T22: 0.4050 REMARK 3 T33: 0.5670 T12: -0.0364 REMARK 3 T13: -0.0489 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 3.1366 L22: 9.8343 REMARK 3 L33: 2.5182 L12: -5.4886 REMARK 3 L13: -1.7509 L23: 2.7910 REMARK 3 S TENSOR REMARK 3 S11: -0.3256 S12: -0.4094 S13: -0.1853 REMARK 3 S21: 0.1248 S22: 0.1550 S23: 0.3377 REMARK 3 S31: 0.0084 S32: -0.5604 S33: 0.1644 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 553 THROUGH 586 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8351 -39.9615 31.4865 REMARK 3 T TENSOR REMARK 3 T11: 0.3807 T22: 0.3650 REMARK 3 T33: 0.4968 T12: -0.0778 REMARK 3 T13: 0.0280 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 6.2147 L22: 3.7493 REMARK 3 L33: 7.8930 L12: -4.5705 REMARK 3 L13: 2.9853 L23: -1.9446 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.1630 S13: 0.1686 REMARK 3 S21: -0.0183 S22: -0.1751 S23: -0.3480 REMARK 3 S31: -0.2463 S32: 0.3089 S33: 0.2209 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 587 THROUGH 597 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4896 -37.5146 21.6388 REMARK 3 T TENSOR REMARK 3 T11: 0.9493 T22: 0.6530 REMARK 3 T33: 0.7548 T12: -0.1036 REMARK 3 T13: -0.1627 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 6.0061 L22: 3.1834 REMARK 3 L33: 9.8291 L12: 1.5149 REMARK 3 L13: -3.7861 L23: -5.2471 REMARK 3 S TENSOR REMARK 3 S11: -0.3567 S12: 1.2345 S13: 0.7746 REMARK 3 S21: -1.4989 S22: 0.9071 S23: 0.2132 REMARK 3 S31: -1.6142 S32: -0.9952 S33: -0.4789 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1171 -24.6855 25.0643 REMARK 3 T TENSOR REMARK 3 T11: 0.5934 T22: 0.3833 REMARK 3 T33: 0.5946 T12: -0.1634 REMARK 3 T13: -0.0948 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 7.2717 L22: 8.3210 REMARK 3 L33: 4.9956 L12: 0.0032 REMARK 3 L13: 0.5615 L23: 4.5019 REMARK 3 S TENSOR REMARK 3 S11: -0.2299 S12: 0.5105 S13: 0.1992 REMARK 3 S21: -0.3903 S22: 0.1333 S23: 1.1683 REMARK 3 S31: 0.3267 S32: -0.5747 S33: -0.2408 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 19 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3385 -23.6936 24.5345 REMARK 3 T TENSOR REMARK 3 T11: 0.6457 T22: 0.3073 REMARK 3 T33: 0.4750 T12: -0.0674 REMARK 3 T13: -0.1321 T23: 0.0665 REMARK 3 L TENSOR REMARK 3 L11: 10.1147 L22: 8.7949 REMARK 3 L33: 1.6486 L12: -0.2201 REMARK 3 L13: -1.2595 L23: 0.2942 REMARK 3 S TENSOR REMARK 3 S11: -0.3186 S12: 0.8604 S13: 0.3171 REMARK 3 S21: -0.4683 S22: 0.2255 S23: 0.9851 REMARK 3 S31: -0.8767 S32: 0.1618 S33: 0.0222 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DF9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000230578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18818 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.319 REMARK 200 RESOLUTION RANGE LOW (A) : 43.198 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.06140 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.9_1692 REMARK 200 STARTING MODEL: 4F6M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DISODIUM TARTRATE, 20 % PEG REMARK 280 3350, PH 7.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.22600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.57100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.22600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.57100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.22600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.57100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.22600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.57100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 704 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 471 REMARK 465 ALA A 472 REMARK 465 ASN A 473 REMARK 465 LYS A 474 REMARK 465 ARG A 475 REMARK 465 MET A 476 REMARK 465 LYS A 477 REMARK 465 VAL A 478 REMARK 465 LYS A 479 REMARK 465 HIS A 480 REMARK 465 ASP A 481 REMARK 465 ALA A 598 REMARK 465 TYR A 599 REMARK 465 LEU A 600 REMARK 465 SER A 601 REMARK 465 ASP A 602 REMARK 465 ARG A 603 REMARK 465 SER A 604 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG E 26 O3' DG E 26 C3' -0.060 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 11 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG E 26 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG E 30 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG E 30 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 555 -5.16 -144.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 496 SG REMARK 620 2 CYS A 499 SG 113.9 REMARK 620 3 HIS A 512 NE2 106.0 107.6 REMARK 620 4 HIS A 516 NE2 109.7 111.1 108.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 524 SG REMARK 620 2 CYS A 527 SG 111.0 REMARK 620 3 HIS A 540 NE2 107.5 111.0 REMARK 620 4 HIS A 544 NE2 106.4 115.4 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 552 SG REMARK 620 2 CYS A 555 SG 112.8 REMARK 620 3 HIS A 568 NE2 108.4 108.3 REMARK 620 4 HIS A 573 NE2 104.2 118.5 103.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6DF5 RELATED DB: PDB REMARK 900 RELATED ID: 6DF8 RELATED DB: PDB DBREF 6DF9 A 471 604 UNP Q86T24 KAISO_HUMAN 471 604 DBREF 6DF9 D 1 18 PDB 6DF9 6DF9 1 18 DBREF 6DF9 E 19 36 PDB 6DF9 6DF9 19 36 SEQADV 6DF9 GLN A 535 UNP Q86T24 GLU 535 ENGINEERED MUTATION SEQRES 1 A 134 MET ALA ASN LYS ARG MET LYS VAL LYS HIS ASP ASP HIS SEQRES 2 A 134 TYR GLU LEU ILE VAL ASP GLY ARG VAL TYR TYR ILE CYS SEQRES 3 A 134 ILE VAL CYS LYS ARG SER TYR VAL CYS LEU THR SER LEU SEQRES 4 A 134 ARG ARG HIS PHE ASN ILE HIS SER TRP GLU LYS LYS TYR SEQRES 5 A 134 PRO CYS ARG TYR CYS GLU LYS VAL PHE PRO LEU ALA GLN SEQRES 6 A 134 TYR ARG THR LYS HIS GLU ILE HIS HIS THR GLY GLU ARG SEQRES 7 A 134 ARG TYR GLN CYS LEU ALA CYS GLY LYS SER PHE ILE ASN SEQRES 8 A 134 TYR GLN PHE MET SER SER HIS ILE LYS SER VAL HIS SER SEQRES 9 A 134 GLN ASP PRO SER GLY ASP SER LYS LEU TYR ARG LEU HIS SEQRES 10 A 134 PRO CYS ARG SER LEU GLN ILE ARG GLN TYR ALA TYR LEU SEQRES 11 A 134 SER ASP ARG SER SEQRES 1 D 18 DT DG DC DT DT DC DC DT DG DC DC DA DA SEQRES 2 D 18 DT DA DA DC DG SEQRES 1 E 18 DC DG DT DT DA DT DT DG DG DC DA DG DG SEQRES 2 E 18 DA DA DG DC DA HET ZN A 701 1 HET ZN A 702 1 HET ZN A 703 1 HET CL A 704 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 4 ZN 3(ZN 2+) FORMUL 7 CL CL 1- FORMUL 8 HOH *29(H2 O) HELIX 1 AA1 CYS A 505 TRP A 518 1 14 HELIX 2 AA2 LEU A 533 GLY A 546 1 14 HELIX 3 AA3 ASN A 561 SER A 574 1 14 SHEET 1 AA1 3 HIS A 483 VAL A 488 0 SHEET 2 AA1 3 ARG A 491 CYS A 496 -1 O ILE A 495 N TYR A 484 SHEET 3 AA1 3 SER A 502 TYR A 503 -1 O TYR A 503 N TYR A 494 SHEET 1 AA2 2 TYR A 522 PRO A 523 0 SHEET 2 AA2 2 VAL A 530 PHE A 531 -1 O PHE A 531 N TYR A 522 SHEET 1 AA3 3 SER A 558 PHE A 559 0 SHEET 2 AA3 3 TYR A 550 CYS A 552 -1 N TYR A 550 O PHE A 559 SHEET 3 AA3 3 TYR A 584 LEU A 586 -1 O ARG A 585 N GLN A 551 LINK SG CYS A 496 ZN ZN A 701 1555 1555 2.34 LINK SG CYS A 499 ZN ZN A 701 1555 1555 2.20 LINK NE2 HIS A 512 ZN ZN A 701 1555 1555 2.09 LINK NE2 HIS A 516 ZN ZN A 701 1555 1555 2.00 LINK SG CYS A 524 ZN ZN A 702 1555 1555 2.28 LINK SG CYS A 527 ZN ZN A 702 1555 1555 2.27 LINK NE2 HIS A 540 ZN ZN A 702 1555 1555 2.08 LINK NE2 HIS A 544 ZN ZN A 702 1555 1555 2.16 LINK SG CYS A 552 ZN ZN A 703 1555 1555 2.24 LINK SG CYS A 555 ZN ZN A 703 1555 1555 2.35 LINK NE2 HIS A 568 ZN ZN A 703 1555 1555 2.06 LINK NE2 HIS A 573 ZN ZN A 703 1555 1555 2.08 SITE 1 AC1 4 CYS A 496 CYS A 499 HIS A 512 HIS A 516 SITE 1 AC2 4 CYS A 524 CYS A 527 HIS A 540 HIS A 544 SITE 1 AC3 4 CYS A 552 CYS A 555 HIS A 568 HIS A 573 SITE 1 AC4 3 ARG A 548 ARG A 590 HOH A 812 CRYST1 44.452 183.142 105.683 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022496 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009462 0.00000