HEADER RNA BINDING PROTEIN 16-MAY-18 6DG1 TITLE NMR STRUCTURE OF THE SECOND QRRM2 DOMAIN OF HUMAN HNRNP H COMPND MOL_ID: 1; COMPND 2 MOLECULE: QRRM2 DOMAIN OF HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HNRNP H2,FTP-3,HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H', COMPND 5 HNRNP H'; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HNRNPH2, FTP3, HNRPH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HNRNP H, HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H, HQRRM2, QRRM2, KEYWDS 2 RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR R.P.SRINIVASA REVDAT 3 14-JUN-23 6DG1 1 REMARK REVDAT 2 11-DEC-19 6DG1 1 REMARK REVDAT 1 05-SEP-18 6DG1 0 JRNL AUTH S.PENUMUTCHU,L.Y.CHIU,J.L.MEAGHER,A.L.HANSEN,J.A.STUCKEY, JRNL AUTH 2 B.S.TOLBERT JRNL TITL DIFFERENTIAL CONFORMATIONAL DYNAMICS ENCODED BY THE JRNL TITL 2 INTER-QRRM LINKER OF HNRNP H. JRNL REF J. AM. CHEM. SOC. 2018 JRNL REFN ESSN 1520-5126 JRNL PMID 30122033 JRNL DOI 10.1021/JACS.8B05366 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000231674. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 40 REMARK 210 PRESSURE : 760 MMHG REMARK 210 SAMPLE CONTENTS : 1.5 MM C13_N15 QRRM2 DOMAIN OF REMARK 210 HNRNP H, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H-15N HSQC; HNCA; HN(CO)CA; REMARK 210 HNCACB; CBCA(CO)NH; HNCO; HN(CA) REMARK 210 CO; HBHA(CO)NH; (H)CCCH-TOCSY; REMARK 210 H(C)CCH-TOCSY; 3D NOESY-(13C-1H)- REMARK 210 HSQC; 3D NOESY-(15N-1H)-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 800 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 146 H GLN A 148 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP A 110 N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 5 ASP A 110 N - CA - CB ANGL. DEV. = -11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 91 76.15 30.49 REMARK 500 1 MET A 93 -62.50 -102.22 REMARK 500 1 ASP A 94 -50.02 -135.29 REMARK 500 1 TRP A 95 17.55 -149.76 REMARK 500 1 LEU A 97 -112.41 -95.94 REMARK 500 1 ASN A 103 82.95 169.77 REMARK 500 1 SER A 104 148.97 82.21 REMARK 500 1 ASN A 109 -43.90 -145.10 REMARK 500 1 ASP A 110 -64.20 -139.80 REMARK 500 1 PRO A 119 -120.02 -76.79 REMARK 500 1 LYS A 124 -77.66 -40.20 REMARK 500 1 PHE A 131 54.89 -97.35 REMARK 500 1 SER A 132 120.92 -38.88 REMARK 500 1 PRO A 138 100.00 -60.02 REMARK 500 1 ASN A 139 28.21 87.70 REMARK 500 1 PRO A 144 90.30 -56.00 REMARK 500 1 ARG A 150 47.22 -94.44 REMARK 500 1 THR A 152 -87.09 -147.10 REMARK 500 1 LYS A 173 25.76 84.13 REMARK 500 1 HIS A 178 76.43 166.90 REMARK 500 1 TYR A 180 104.67 -53.51 REMARK 500 1 LYS A 185 89.93 -63.32 REMARK 500 1 SER A 186 159.69 -37.36 REMARK 500 1 ARG A 192 178.72 59.79 REMARK 500 2 ASN A 91 90.44 -161.89 REMARK 500 2 ASP A 94 -43.84 -134.06 REMARK 500 2 TRP A 95 18.61 -148.95 REMARK 500 2 LEU A 97 -107.32 -93.70 REMARK 500 2 ASN A 103 81.28 176.30 REMARK 500 2 SER A 104 149.76 85.15 REMARK 500 2 ASN A 109 -44.28 -141.80 REMARK 500 2 ASP A 110 -68.16 -133.76 REMARK 500 2 PHE A 120 102.04 -59.98 REMARK 500 2 SER A 123 -132.96 -151.90 REMARK 500 2 LYS A 124 -87.39 -67.63 REMARK 500 2 SER A 132 114.94 -38.24 REMARK 500 2 GLU A 135 48.26 -90.53 REMARK 500 2 PRO A 138 103.54 -59.98 REMARK 500 2 ASN A 139 26.97 86.81 REMARK 500 2 PRO A 144 85.54 -58.10 REMARK 500 2 THR A 152 -164.59 -102.85 REMARK 500 2 LYS A 173 14.44 81.88 REMARK 500 2 HIS A 178 61.93 163.12 REMARK 500 2 TYR A 180 105.89 -49.87 REMARK 500 2 SER A 186 154.27 -41.51 REMARK 500 2 ARG A 188 -27.43 -37.83 REMARK 500 2 ARG A 192 162.08 59.59 REMARK 500 2 THR A 193 20.57 -147.64 REMARK 500 3 ASN A 91 78.84 37.98 REMARK 500 3 MET A 93 -62.47 -103.43 REMARK 500 REMARK 500 THIS ENTRY HAS 240 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30469 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF THE SECOND QRRM2 DOMAIN OF HUMAN HNRNP H DBREF 6DG1 A 94 194 UNP P55795 HNRH2_HUMAN 94 194 SEQADV 6DG1 SER A 90 UNP P55795 EXPRESSION TAG SEQADV 6DG1 ASN A 91 UNP P55795 EXPRESSION TAG SEQADV 6DG1 ALA A 92 UNP P55795 EXPRESSION TAG SEQADV 6DG1 MET A 93 UNP P55795 EXPRESSION TAG SEQADV 6DG1 ILE A 141 UNP P55795 MET 141 CONFLICT SEQRES 1 A 105 SER ASN ALA MET ASP TRP VAL LEU LYS HIS THR GLY PRO SEQRES 2 A 105 ASN SER PRO ASP THR ALA ASN ASP GLY PHE VAL ARG LEU SEQRES 3 A 105 ARG GLY LEU PRO PHE GLY CYS SER LYS GLU GLU ILE VAL SEQRES 4 A 105 GLN PHE PHE SER GLY LEU GLU ILE VAL PRO ASN GLY ILE SEQRES 5 A 105 THR LEU PRO VAL ASP PHE GLN GLY ARG SER THR GLY GLU SEQRES 6 A 105 ALA PHE VAL GLN PHE ALA SER GLN GLU ILE ALA GLU LYS SEQRES 7 A 105 ALA LEU LYS LYS HIS LYS GLU ARG ILE GLY HIS ARG TYR SEQRES 8 A 105 ILE GLU ILE PHE LYS SER SER ARG ALA GLU VAL ARG THR SEQRES 9 A 105 HIS HELIX 1 AA1 SER A 123 PHE A 131 1 9 HELIX 2 AA2 SER A 161 LYS A 170 1 10 SHEET 1 AA1 2 PHE A 112 ARG A 116 0 SHEET 2 AA1 2 GLU A 154 GLN A 158 -1 O ALA A 155 N LEU A 115 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1