HEADER HYDROLASE 18-MAY-18 6DGU TITLE PER-2 CLASS A EXTENDED-SPECTRUM BETA-LACTAMASE CRYSTAL STRUCTURE AT TITLE 2 2.69 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: B, A, C, D; COMPND 4 FRAGMENT: RESIDUES 28-308; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CITROBACTER FREUNDII; SOURCE 3 ORGANISM_TAXID: 546; SOURCE 4 GENE: BLAPER-2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28/PER-2 KEYWDS PENICILLOIL-SERINE-TRANSFERASE, ANTIBIOTIC RESISTANCE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.POWER,M.RUGGIERO,G.GUTKIND,R.BONOMO,S.KLINKE REVDAT 3 11-OCT-23 6DGU 1 REMARK REVDAT 2 03-JUN-20 6DGU 1 JRNL REVDAT 1 22-MAY-19 6DGU 0 JRNL AUTH M.RUGGIERO,K.M.PAPP-WALLACE,F.BRUNETTI,M.D.BARNES, JRNL AUTH 2 R.A.BONOMO,G.GUTKIND,S.KLINKE,P.POWER JRNL TITL STRUCTURAL INSIGHTS INTO THE INHIBITION OF THE JRNL TITL 2 EXTENDED-SPECTRUM BETA-LACTAMASE PER-2 BY AVIBACTAM. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 63 2019 JRNL REFN ESSN 1098-6596 JRNL PMID 31235626 JRNL DOI 10.1128/AAC.00487-19 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 32951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.271 REMARK 3 R VALUE (WORKING SET) : 0.267 REMARK 3 FREE R VALUE : 0.340 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2948 - 6.4784 0.96 2350 152 0.2126 0.2432 REMARK 3 2 6.4784 - 5.1452 0.99 2301 146 0.2561 0.3258 REMARK 3 3 5.1452 - 4.4957 0.99 2285 144 0.2296 0.2835 REMARK 3 4 4.4957 - 4.0851 0.99 2260 145 0.2373 0.3119 REMARK 3 5 4.0851 - 3.7925 0.99 2246 138 0.2514 0.3322 REMARK 3 6 3.7925 - 3.5690 0.98 2236 145 0.2623 0.3629 REMARK 3 7 3.5690 - 3.3904 0.98 2213 141 0.2696 0.3876 REMARK 3 8 3.3904 - 3.2429 0.98 2223 138 0.2722 0.3549 REMARK 3 9 3.2429 - 3.1181 0.98 2229 145 0.2851 0.3912 REMARK 3 10 3.1181 - 3.0105 0.98 2194 144 0.2911 0.3698 REMARK 3 11 3.0105 - 2.9164 0.98 2173 143 0.3003 0.3897 REMARK 3 12 2.9164 - 2.8331 0.98 2183 140 0.3191 0.3573 REMARK 3 13 2.8331 - 2.7585 0.98 2206 136 0.3430 0.4026 REMARK 3 14 2.7585 - 2.6912 0.83 1872 123 0.4142 0.4608 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8597 REMARK 3 ANGLE : 1.357 11677 REMARK 3 CHIRALITY : 0.080 1368 REMARK 3 PLANARITY : 0.010 1501 REMARK 3 DIHEDRAL : 4.858 5203 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 28 THROUGH 293) REMARK 3 SELECTION : (CHAIN B AND RESID 28 THROUGH 293) REMARK 3 ATOM PAIRS NUMBER : 5086 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 28 THROUGH 293) REMARK 3 SELECTION : (CHAIN C AND RESID 28 THROUGH 293) REMARK 3 ATOM PAIRS NUMBER : 5086 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 28 THROUGH 293) REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 5086 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DGU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980100 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED CHANNEL CUT REMARK 200 SI[111] CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : CONVEX PREFOCUSSING MIRROR AND A REMARK 200 KIRKPATRICK-BAEZ PAIR OF REMARK 200 FOCUSSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.691 REMARK 200 RESOLUTION RANGE LOW (A) : 41.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 5.460 REMARK 200 R MERGE (I) : 0.16400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.46 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.12-2829 REMARK 200 STARTING MODEL: 4D2O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6000, 0.05 M IMIDAZOLE PH=8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.18500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.46000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.46000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.18500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 297 REMARK 465 SER B 298 REMARK 465 PRO B 299 REMARK 465 ASP B 300 REMARK 465 LEU A 294 REMARK 465 SER A 295 REMARK 465 ALA A 296 REMARK 465 VAL A 297 REMARK 465 SER A 298 REMARK 465 PRO A 299 REMARK 465 ASP A 300 REMARK 465 SER C 295 REMARK 465 ALA C 296 REMARK 465 VAL C 297 REMARK 465 SER C 298 REMARK 465 PRO C 299 REMARK 465 ASP C 300 REMARK 465 SER D 26 REMARK 465 PRO D 27 REMARK 465 LEU D 294 REMARK 465 SER D 295 REMARK 465 ALA D 296 REMARK 465 VAL D 297 REMARK 465 SER D 298 REMARK 465 PRO D 299 REMARK 465 ASP D 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 52 O HOH B 401 1.99 REMARK 500 O LEU C 207 O HOH C 401 2.02 REMARK 500 O GLY D 217 O HOH D 401 2.03 REMARK 500 O PRO A 67 O HOH A 401 2.04 REMARK 500 O HOH A 436 O HOH A 441 2.06 REMARK 500 OD1 ASN B 165 NE2 GLN B 168 2.07 REMARK 500 O GLY C 39 O HOH C 402 2.08 REMARK 500 O SER A 126 O HOH A 402 2.08 REMARK 500 O HOH A 406 O HOH A 436 2.09 REMARK 500 O SER B 94 O HOH B 402 2.10 REMARK 500 O TRP C 105 O HOH C 403 2.10 REMARK 500 OG1 THR B 35 O HOH B 403 2.10 REMARK 500 O GLU C 64 O HOH C 404 2.11 REMARK 500 ND1 HIS C 82 O HOH C 405 2.11 REMARK 500 NE2 GLN C 284 O HOH C 406 2.12 REMARK 500 O ASP B 111 O HOH B 404 2.13 REMARK 500 O LEU C 59 O HOH C 407 2.14 REMARK 500 SG CYS B 135 O HOH B 453 2.17 REMARK 500 O LEU C 79 O HOH C 408 2.17 REMARK 500 OE2 GLU A 159 O HOH A 403 2.18 REMARK 500 O LEU C 199 O HOH C 409 2.19 REMARK 500 O VAL B 249 O HOH B 405 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP D 105 CB TRP D 105 CG -0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 28 CB - CG - CD2 ANGL. DEV. = 14.0 DEGREES REMARK 500 LEU C 57 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 GLN C 124 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 TRP D 105 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 TRP D 105 N - CA - CB ANGL. DEV. = -12.1 DEGREES REMARK 500 TRP D 105 CB - CG - CD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 27 22.69 -69.02 REMARK 500 GLN B 69 -134.00 53.79 REMARK 500 ARG B 220 -105.65 -106.72 REMARK 500 SER B 295 -71.78 -52.35 REMARK 500 PRO A 27 4.42 -58.97 REMARK 500 ASN A 61 68.72 60.92 REMARK 500 GLN A 69 -135.69 47.55 REMARK 500 THR A 104 -145.40 -67.08 REMARK 500 SER A 106 81.47 4.66 REMARK 500 MET A 109 0.83 -69.23 REMARK 500 ARG A 220 -106.05 -105.68 REMARK 500 GLN C 69 -132.48 50.82 REMARK 500 ASN C 103B -88.57 -139.80 REMARK 500 TRP C 105 147.52 -26.45 REMARK 500 ARG C 220 -108.02 -108.81 REMARK 500 GLN D 69 -131.73 50.31 REMARK 500 ASN D 103B -44.10 -145.30 REMARK 500 ASP D 113 -12.91 -24.10 REMARK 500 ASP D 173 3.56 -69.21 REMARK 500 ARG D 220 -109.10 -109.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 103A ASN A 103B 146.58 REMARK 500 TRP D 105 SER D 106 -139.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 448 DISTANCE = 6.69 ANGSTROMS DBREF 6DGU B 26 300 UNP A2RP81 A2RP81_CITFR 28 308 DBREF 6DGU A 26 300 UNP A2RP81 A2RP81_CITFR 28 308 DBREF 6DGU C 26 300 UNP A2RP81 A2RP81_CITFR 28 308 DBREF 6DGU D 26 300 UNP A2RP81 A2RP81_CITFR 28 308 SEQRES 1 B 281 SER PRO LEU LEU LYS GLU GLN ILE GLU THR ILE VAL THR SEQRES 2 B 281 GLY LYS LYS ALA THR VAL GLY VAL ALA VAL TRP GLY PRO SEQRES 3 B 281 ASP ASP LEU GLU PRO LEU LEU LEU ASN PRO PHE GLU LYS SEQRES 4 B 281 PHE PRO MET GLN SER VAL PHE LYS LEU HIS LEU ALA MET SEQRES 5 B 281 LEU VAL LEU HIS GLN VAL ASP GLN GLY LYS LEU ASP LEU SEQRES 6 B 281 ASN GLN SER VAL THR VAL ASN ARG ALA ALA VAL LEU GLN SEQRES 7 B 281 ASN THR TRP SER PRO MET MET LYS ASP HIS GLN GLY ASP SEQRES 8 B 281 GLU PHE THR VAL ALA VAL GLN GLN LEU LEU GLN TYR SER SEQRES 9 B 281 VAL SER HIS SER ASP ASN VAL ALA CYS ASP LEU LEU PHE SEQRES 10 B 281 GLU LEU VAL GLY GLY PRO GLN ALA LEU HIS ALA TYR ILE SEQRES 11 B 281 GLN SER LEU GLY VAL LYS GLU ALA ALA VAL VAL ALA ASN SEQRES 12 B 281 GLU ALA GLN MET HIS ALA ASP ASP GLN VAL GLN TYR GLN SEQRES 13 B 281 ASN TRP THR SER MET LYS ALA ALA ALA GLN VAL LEU GLN SEQRES 14 B 281 LYS PHE GLU GLN LYS LYS GLN LEU SER GLU THR SER GLN SEQRES 15 B 281 ALA LEU LEU TRP LYS TRP MET VAL GLU THR THR THR GLY SEQRES 16 B 281 PRO GLN ARG LEU LYS GLY LEU LEU PRO ALA GLY THR ILE SEQRES 17 B 281 VAL ALA HIS LYS THR GLY THR SER GLY VAL ARG ALA GLY SEQRES 18 B 281 LYS THR ALA ALA THR ASN ASP ALA GLY VAL ILE MET LEU SEQRES 19 B 281 PRO ASP GLY ARG PRO LEU LEU VAL ALA VAL PHE VAL LYS SEQRES 20 B 281 ASP SER ALA GLU SER GLU ARG THR ASN GLU ALA ILE ILE SEQRES 21 B 281 ALA GLN VAL ALA GLN ALA ALA TYR GLN PHE GLU LEU LYS SEQRES 22 B 281 LYS LEU SER ALA VAL SER PRO ASP SEQRES 1 A 281 SER PRO LEU LEU LYS GLU GLN ILE GLU THR ILE VAL THR SEQRES 2 A 281 GLY LYS LYS ALA THR VAL GLY VAL ALA VAL TRP GLY PRO SEQRES 3 A 281 ASP ASP LEU GLU PRO LEU LEU LEU ASN PRO PHE GLU LYS SEQRES 4 A 281 PHE PRO MET GLN SER VAL PHE LYS LEU HIS LEU ALA MET SEQRES 5 A 281 LEU VAL LEU HIS GLN VAL ASP GLN GLY LYS LEU ASP LEU SEQRES 6 A 281 ASN GLN SER VAL THR VAL ASN ARG ALA ALA VAL LEU GLN SEQRES 7 A 281 ASN THR TRP SER PRO MET MET LYS ASP HIS GLN GLY ASP SEQRES 8 A 281 GLU PHE THR VAL ALA VAL GLN GLN LEU LEU GLN TYR SER SEQRES 9 A 281 VAL SER HIS SER ASP ASN VAL ALA CYS ASP LEU LEU PHE SEQRES 10 A 281 GLU LEU VAL GLY GLY PRO GLN ALA LEU HIS ALA TYR ILE SEQRES 11 A 281 GLN SER LEU GLY VAL LYS GLU ALA ALA VAL VAL ALA ASN SEQRES 12 A 281 GLU ALA GLN MET HIS ALA ASP ASP GLN VAL GLN TYR GLN SEQRES 13 A 281 ASN TRP THR SER MET LYS ALA ALA ALA GLN VAL LEU GLN SEQRES 14 A 281 LYS PHE GLU GLN LYS LYS GLN LEU SER GLU THR SER GLN SEQRES 15 A 281 ALA LEU LEU TRP LYS TRP MET VAL GLU THR THR THR GLY SEQRES 16 A 281 PRO GLN ARG LEU LYS GLY LEU LEU PRO ALA GLY THR ILE SEQRES 17 A 281 VAL ALA HIS LYS THR GLY THR SER GLY VAL ARG ALA GLY SEQRES 18 A 281 LYS THR ALA ALA THR ASN ASP ALA GLY VAL ILE MET LEU SEQRES 19 A 281 PRO ASP GLY ARG PRO LEU LEU VAL ALA VAL PHE VAL LYS SEQRES 20 A 281 ASP SER ALA GLU SER GLU ARG THR ASN GLU ALA ILE ILE SEQRES 21 A 281 ALA GLN VAL ALA GLN ALA ALA TYR GLN PHE GLU LEU LYS SEQRES 22 A 281 LYS LEU SER ALA VAL SER PRO ASP SEQRES 1 C 281 SER PRO LEU LEU LYS GLU GLN ILE GLU THR ILE VAL THR SEQRES 2 C 281 GLY LYS LYS ALA THR VAL GLY VAL ALA VAL TRP GLY PRO SEQRES 3 C 281 ASP ASP LEU GLU PRO LEU LEU LEU ASN PRO PHE GLU LYS SEQRES 4 C 281 PHE PRO MET GLN SER VAL PHE LYS LEU HIS LEU ALA MET SEQRES 5 C 281 LEU VAL LEU HIS GLN VAL ASP GLN GLY LYS LEU ASP LEU SEQRES 6 C 281 ASN GLN SER VAL THR VAL ASN ARG ALA ALA VAL LEU GLN SEQRES 7 C 281 ASN THR TRP SER PRO MET MET LYS ASP HIS GLN GLY ASP SEQRES 8 C 281 GLU PHE THR VAL ALA VAL GLN GLN LEU LEU GLN TYR SER SEQRES 9 C 281 VAL SER HIS SER ASP ASN VAL ALA CYS ASP LEU LEU PHE SEQRES 10 C 281 GLU LEU VAL GLY GLY PRO GLN ALA LEU HIS ALA TYR ILE SEQRES 11 C 281 GLN SER LEU GLY VAL LYS GLU ALA ALA VAL VAL ALA ASN SEQRES 12 C 281 GLU ALA GLN MET HIS ALA ASP ASP GLN VAL GLN TYR GLN SEQRES 13 C 281 ASN TRP THR SER MET LYS ALA ALA ALA GLN VAL LEU GLN SEQRES 14 C 281 LYS PHE GLU GLN LYS LYS GLN LEU SER GLU THR SER GLN SEQRES 15 C 281 ALA LEU LEU TRP LYS TRP MET VAL GLU THR THR THR GLY SEQRES 16 C 281 PRO GLN ARG LEU LYS GLY LEU LEU PRO ALA GLY THR ILE SEQRES 17 C 281 VAL ALA HIS LYS THR GLY THR SER GLY VAL ARG ALA GLY SEQRES 18 C 281 LYS THR ALA ALA THR ASN ASP ALA GLY VAL ILE MET LEU SEQRES 19 C 281 PRO ASP GLY ARG PRO LEU LEU VAL ALA VAL PHE VAL LYS SEQRES 20 C 281 ASP SER ALA GLU SER GLU ARG THR ASN GLU ALA ILE ILE SEQRES 21 C 281 ALA GLN VAL ALA GLN ALA ALA TYR GLN PHE GLU LEU LYS SEQRES 22 C 281 LYS LEU SER ALA VAL SER PRO ASP SEQRES 1 D 281 SER PRO LEU LEU LYS GLU GLN ILE GLU THR ILE VAL THR SEQRES 2 D 281 GLY LYS LYS ALA THR VAL GLY VAL ALA VAL TRP GLY PRO SEQRES 3 D 281 ASP ASP LEU GLU PRO LEU LEU LEU ASN PRO PHE GLU LYS SEQRES 4 D 281 PHE PRO MET GLN SER VAL PHE LYS LEU HIS LEU ALA MET SEQRES 5 D 281 LEU VAL LEU HIS GLN VAL ASP GLN GLY LYS LEU ASP LEU SEQRES 6 D 281 ASN GLN SER VAL THR VAL ASN ARG ALA ALA VAL LEU GLN SEQRES 7 D 281 ASN THR TRP SER PRO MET MET LYS ASP HIS GLN GLY ASP SEQRES 8 D 281 GLU PHE THR VAL ALA VAL GLN GLN LEU LEU GLN TYR SER SEQRES 9 D 281 VAL SER HIS SER ASP ASN VAL ALA CYS ASP LEU LEU PHE SEQRES 10 D 281 GLU LEU VAL GLY GLY PRO GLN ALA LEU HIS ALA TYR ILE SEQRES 11 D 281 GLN SER LEU GLY VAL LYS GLU ALA ALA VAL VAL ALA ASN SEQRES 12 D 281 GLU ALA GLN MET HIS ALA ASP ASP GLN VAL GLN TYR GLN SEQRES 13 D 281 ASN TRP THR SER MET LYS ALA ALA ALA GLN VAL LEU GLN SEQRES 14 D 281 LYS PHE GLU GLN LYS LYS GLN LEU SER GLU THR SER GLN SEQRES 15 D 281 ALA LEU LEU TRP LYS TRP MET VAL GLU THR THR THR GLY SEQRES 16 D 281 PRO GLN ARG LEU LYS GLY LEU LEU PRO ALA GLY THR ILE SEQRES 17 D 281 VAL ALA HIS LYS THR GLY THR SER GLY VAL ARG ALA GLY SEQRES 18 D 281 LYS THR ALA ALA THR ASN ASP ALA GLY VAL ILE MET LEU SEQRES 19 D 281 PRO ASP GLY ARG PRO LEU LEU VAL ALA VAL PHE VAL LYS SEQRES 20 D 281 ASP SER ALA GLU SER GLU ARG THR ASN GLU ALA ILE ILE SEQRES 21 D 281 ALA GLN VAL ALA GLN ALA ALA TYR GLN PHE GLU LEU LYS SEQRES 22 D 281 LYS LEU SER ALA VAL SER PRO ASP FORMUL 5 HOH *174(H2 O) HELIX 1 AA1 LEU B 28 THR B 38 1 11 HELIX 2 AA2 GLN B 69 VAL B 71 5 3 HELIX 3 AA3 PHE B 72 GLN B 86 1 15 HELIX 4 AA4 SER B 106 HIS B 112 1 7 HELIX 5 AA5 VAL B 119 HIS B 129 1 11 HELIX 6 AA6 ASP B 131 GLY B 143 1 13 HELIX 7 AA7 GLY B 144 LEU B 155 1 12 HELIX 8 AA8 ASN B 165 ASP B 172 1 8 HELIX 9 AA9 GLN B 174 GLN B 178 5 5 HELIX 10 AB1 SER B 182 GLN B 195 1 14 HELIX 11 AB2 SER B 200 GLU B 213 1 14 HELIX 12 AB3 SER B 271 LYS B 292 1 22 HELIX 13 AB4 PRO A 27 THR A 38 1 12 HELIX 14 AB5 VAL A 71 GLN A 86 1 16 HELIX 15 AB6 PRO A 107 HIS A 112 1 6 HELIX 16 AB7 VAL A 119 HIS A 129 1 11 HELIX 17 AB8 ASP A 131 GLY A 143 1 13 HELIX 18 AB9 GLY A 144 LEU A 155 1 12 HELIX 19 AC1 ASN A 165 ASP A 172 1 8 HELIX 20 AC2 VAL A 175 GLN A 178 5 4 HELIX 21 AC3 SER A 182 GLN A 195 1 14 HELIX 22 AC4 SER A 200 GLU A 213 1 14 HELIX 23 AC5 SER A 271 LYS A 293 1 23 HELIX 24 AC6 PRO C 27 THR C 38 1 12 HELIX 25 AC7 GLN C 69 VAL C 71 5 3 HELIX 26 AC8 PHE C 72 GLN C 86 1 15 HELIX 27 AC9 PRO C 107 HIS C 112 1 6 HELIX 28 AD1 VAL C 119 SER C 128 1 10 HELIX 29 AD2 ASP C 131 GLY C 143 1 13 HELIX 30 AD3 GLY C 143 LEU C 155 1 13 HELIX 31 AD4 ASN C 165 ASP C 172 1 8 HELIX 32 AD5 VAL C 175 GLN C 178 5 4 HELIX 33 AD6 SER C 182 GLN C 195 1 14 HELIX 34 AD7 SER C 200 GLU C 213 1 14 HELIX 35 AD8 SER C 271 LYS C 293 1 23 HELIX 36 AD9 LEU D 29 THR D 38 1 10 HELIX 37 AE1 VAL D 71 GLN D 86 1 16 HELIX 38 AE2 SER D 106 ASP D 111 1 6 HELIX 39 AE3 VAL D 119 SER D 128 1 10 HELIX 40 AE4 ASP D 131 GLY D 143 1 13 HELIX 41 AE5 GLY D 143 LEU D 155 1 13 HELIX 42 AE6 ASN D 165 ASP D 172 1 8 HELIX 43 AE7 GLN D 174 GLN D 178 5 5 HELIX 44 AE8 SER D 182 GLN D 195 1 14 HELIX 45 AE9 SER D 200 GLU D 213 1 14 HELIX 46 AF1 SER D 271 LYS D 293 1 23 SHEET 1 AA1 5 LEU B 57 LEU B 60 0 SHEET 2 AA1 5 THR B 43 TRP B 49 -1 N VAL B 48 O LEU B 57 SHEET 3 AA1 5 PRO B 258 SER B 268 -1 O LYS B 266 N THR B 43 SHEET 4 AA1 5 LYS B 240D MET B 251 -1 N ILE B 250 O LEU B 259 SHEET 5 AA1 5 VAL B 231 THR B 237 -1 N ALA B 232 O VAL B 249 SHEET 1 AA2 5 LEU B 57 LEU B 60 0 SHEET 2 AA2 5 THR B 43 TRP B 49 -1 N VAL B 48 O LEU B 57 SHEET 3 AA2 5 PRO B 258 SER B 268 -1 O LYS B 266 N THR B 43 SHEET 4 AA2 5 LYS B 240D MET B 251 -1 N ILE B 250 O LEU B 259 SHEET 5 AA2 5 VAL B 240 ARG B 240A-1 N ARG B 240A O LYS B 240D SHEET 1 AA3 3 PHE B 66 PRO B 67 0 SHEET 2 AA3 3 TRP B 180 THR B 181 -1 O THR B 181 N PHE B 66 SHEET 3 AA3 3 ALA B 160 ALA B 161 -1 N ALA B 161 O TRP B 180 SHEET 1 AA4 2 SER B 94 ASN B 98 0 SHEET 2 AA4 2 GLU B 114 ALA B 118 -1 O VAL B 117 N VAL B 95 SHEET 1 AA5 5 LEU A 57 LEU A 60 0 SHEET 2 AA5 5 THR A 43 TRP A 49 -1 N VAL A 48 O LEU A 57 SHEET 3 AA5 5 PRO A 258 SER A 268 -1 O PHE A 264 N GLY A 45 SHEET 4 AA5 5 LYS A 240D MET A 251 -1 N THR A 241 O SER A 268 SHEET 5 AA5 5 VAL A 231 THR A 237 -1 N LYS A 234 O ALA A 247 SHEET 1 AA6 5 LEU A 57 LEU A 60 0 SHEET 2 AA6 5 THR A 43 TRP A 49 -1 N VAL A 48 O LEU A 57 SHEET 3 AA6 5 PRO A 258 SER A 268 -1 O PHE A 264 N GLY A 45 SHEET 4 AA6 5 LYS A 240D MET A 251 -1 N THR A 241 O SER A 268 SHEET 5 AA6 5 VAL A 240 ARG A 240A-1 N ARG A 240A O LYS A 240D SHEET 1 AA7 2 PHE A 66 PRO A 67 0 SHEET 2 AA7 2 TRP A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AA8 2 SER A 94 ASN A 98 0 SHEET 2 AA8 2 GLU A 114 ALA A 118 -1 O VAL A 117 N VAL A 95 SHEET 1 AA9 5 LEU C 57 LEU C 60 0 SHEET 2 AA9 5 THR C 43 TRP C 49 -1 N VAL C 48 O LEU C 57 SHEET 3 AA9 5 PRO C 258 SER C 268 -1 O LYS C 266 N THR C 43 SHEET 4 AA9 5 LYS C 240D MET C 251 -1 N THR C 244 O VAL C 265 SHEET 5 AA9 5 VAL C 231 THR C 237 -1 N GLY C 236 O ASN C 245 SHEET 1 AB1 5 LEU C 57 LEU C 60 0 SHEET 2 AB1 5 THR C 43 TRP C 49 -1 N VAL C 48 O LEU C 57 SHEET 3 AB1 5 PRO C 258 SER C 268 -1 O LYS C 266 N THR C 43 SHEET 4 AB1 5 LYS C 240D MET C 251 -1 N THR C 244 O VAL C 265 SHEET 5 AB1 5 VAL C 240 ARG C 240A-1 N ARG C 240A O LYS C 240D SHEET 1 AB2 2 PHE C 66 PRO C 67 0 SHEET 2 AB2 2 TRP C 180 THR C 181 -1 O THR C 181 N PHE C 66 SHEET 1 AB3 2 SER C 94 ASN C 98 0 SHEET 2 AB3 2 GLU C 114 ALA C 118 -1 O PHE C 115 N VAL C 97 SHEET 1 AB4 5 LEU D 57 LEU D 60 0 SHEET 2 AB4 5 THR D 43 TRP D 49 -1 N VAL D 48 O LEU D 57 SHEET 3 AB4 5 PRO D 258 SER D 268 -1 O LYS D 266 N THR D 43 SHEET 4 AB4 5 LYS D 240D MET D 251 -1 N ALA D 242 O ASP D 267 SHEET 5 AB4 5 VAL D 231 THR D 237 -1 N GLY D 236 O ASN D 245 SHEET 1 AB5 5 LEU D 57 LEU D 60 0 SHEET 2 AB5 5 THR D 43 TRP D 49 -1 N VAL D 48 O LEU D 57 SHEET 3 AB5 5 PRO D 258 SER D 268 -1 O LYS D 266 N THR D 43 SHEET 4 AB5 5 LYS D 240D MET D 251 -1 N ALA D 242 O ASP D 267 SHEET 5 AB5 5 VAL D 240 ARG D 240A-1 N ARG D 240A O LYS D 240D SHEET 1 AB6 2 PHE D 66 PRO D 67 0 SHEET 2 AB6 2 TRP D 180 THR D 181 -1 O THR D 181 N PHE D 66 SHEET 1 AB7 2 SER D 94 ASN D 98 0 SHEET 2 AB7 2 GLU D 114 ALA D 118 -1 O VAL D 117 N VAL D 95 CRYST1 82.370 82.580 174.920 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005717 0.00000