HEADER REPLICATION 21-MAY-18 6DHW TITLE CRYSTAL STRUCTURE OF PRIMASE IRON-SULFUR DOMAIN (266-457) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PRIMASE LARGE SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DNA PRIMASE 58 KDA SUBUNIT,P58; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRIM2, PRIM2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 KEYWDS IRON SULFUR CLUSTER, DNA PRIMASE, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.HOLT,L.E.SALAY,W.J.CHAZIN REVDAT 4 11-OCT-23 6DHW 1 REMARK REVDAT 3 01-JAN-20 6DHW 1 REMARK REVDAT 2 02-JAN-19 6DHW 1 JRNL REVDAT 1 19-DEC-18 6DHW 0 JRNL AUTH M.E.HOLT,L.E.SALAY,E.O'BRIEN,J.K.BARTON,W.J.CHAZIN JRNL TITL FUNCTIONAL AND STRUCTURAL SIMILARITY OF HUMAN DNA PRIMASE JRNL TITL 2 [4FE4S] CLUSTER DOMAIN CONSTRUCTS. JRNL REF PLOS ONE V. 13 09345 2018 JRNL REFN ESSN 1932-6203 JRNL PMID 30562384 JRNL DOI 10.1371/JOURNAL.PONE.0209345 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 27584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2030 - 4.3345 0.99 2963 155 0.1568 0.1730 REMARK 3 2 4.3345 - 3.4412 0.80 2394 108 0.1581 0.1836 REMARK 3 3 3.4412 - 3.0064 0.91 2650 156 0.1837 0.2390 REMARK 3 4 3.0064 - 2.7317 0.93 2713 138 0.1961 0.2346 REMARK 3 5 2.7317 - 2.5359 0.94 2723 145 0.1929 0.2224 REMARK 3 6 2.5359 - 2.3864 0.95 2768 144 0.1990 0.2313 REMARK 3 7 2.3864 - 2.2669 0.95 2722 156 0.1972 0.2417 REMARK 3 8 2.2669 - 2.1683 0.91 2635 139 0.2015 0.2210 REMARK 3 9 2.1683 - 2.0848 0.76 2243 98 0.2044 0.2562 REMARK 3 10 2.0848 - 2.0129 0.84 2415 119 0.2313 0.2395 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 272 THROUGH 279 OR REMARK 3 RESID 281 THROUGH 289 OR RESID 291 REMARK 3 THROUGH 292 OR RESID 294 THROUGH 301 OR REMARK 3 RESID 303 THROUGH 329 OR RESID 346 REMARK 3 THROUGH 350 OR RESID 352 OR (RESID 353 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 361 THROUGH 372 REMARK 3 OR RESID 375 THROUGH 377 OR RESID 379 REMARK 3 THROUGH 391 OR RESID 393 THROUGH 401 OR REMARK 3 RESID 403 THROUGH 408 OR RESID 410 REMARK 3 THROUGH 429 OR RESID 431 THROUGH 432 OR REMARK 3 RESID 434 THROUGH 435 OR RESID 437 REMARK 3 THROUGH 439 OR RESID 441 THROUGH 450 OR REMARK 3 RESID 452 THROUGH 457 OR RESID 500)) REMARK 3 SELECTION : (CHAIN B AND (RESID 272 THROUGH 279 OR REMARK 3 RESID 281 THROUGH 289 OR RESID 291 REMARK 3 THROUGH 292 OR RESID 294 THROUGH 301 OR REMARK 3 RESID 303 THROUGH 329 OR RESID 346 REMARK 3 THROUGH 350 OR RESID 352 THROUGH 353 OR REMARK 3 RESID 361 THROUGH 372 OR RESID 375 REMARK 3 THROUGH 377 OR RESID 379 THROUGH 391 OR REMARK 3 RESID 393 THROUGH 401 OR RESID 403 REMARK 3 THROUGH 408 OR RESID 410 THROUGH 429 OR REMARK 3 RESID 431 THROUGH 432 OR RESID 434 REMARK 3 THROUGH 435 OR RESID 437 THROUGH 439 OR REMARK 3 RESID 441 THROUGH 450 OR RESID 452 REMARK 3 THROUGH 457 OR RESID 500)) REMARK 3 ATOM PAIRS NUMBER : 1276 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: OMITTED RESIDUES 315-360 OF CHAINS A REMARK 3 AND B IN THE MOLECULAR REPLACEMENT MODEL 3L9Q REMARK 4 REMARK 4 6DHW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0781 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27613 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.64800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 3L9Q REMARK 200 REMARK 200 REMARK: 2-DIMENSIONAL PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.5, 400 MM LISO4, REMARK 280 18% PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.09650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.09650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 266 REMARK 465 ASN A 267 REMARK 465 VAL A 268 REMARK 465 GLY A 269 REMARK 465 GLU A 330 REMARK 465 PHE A 331 REMARK 465 ILE A 332 REMARK 465 LYS A 333 REMARK 465 GLY A 334 REMARK 465 LYS A 335 REMARK 465 MET A 336 REMARK 465 ASP A 337 REMARK 465 PRO A 338 REMARK 465 ASP A 339 REMARK 465 LYS A 340 REMARK 465 GLY A 354 REMARK 465 LYS A 355 REMARK 465 GLU A 356 REMARK 465 GLY A 357 REMARK 465 LYS A 358 REMARK 465 ARG A 359 REMARK 465 THR A 360 REMARK 465 GLY B 266 REMARK 465 ASN B 267 REMARK 465 VAL B 268 REMARK 465 GLY B 269 REMARK 465 LYS B 270 REMARK 465 ILE B 271 REMARK 465 PHE B 331 REMARK 465 ILE B 332 REMARK 465 LYS B 333 REMARK 465 GLY B 334 REMARK 465 LYS B 335 REMARK 465 MET B 336 REMARK 465 ASP B 337 REMARK 465 PRO B 338 REMARK 465 ASP B 339 REMARK 465 LYS B 340 REMARK 465 PHE B 341 REMARK 465 ASP B 342 REMARK 465 LYS B 343 REMARK 465 GLY B 344 REMARK 465 TYR B 345 REMARK 465 GLY B 354 REMARK 465 LYS B 355 REMARK 465 GLU B 356 REMARK 465 GLY B 357 REMARK 465 LYS B 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 PHE B 353 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 359 CB CG CD NE CZ NH1 NH2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 287 SG REMARK 620 2 SF4 A 501 S2 120.1 REMARK 620 3 SF4 A 501 S3 108.1 104.1 REMARK 620 4 SF4 A 501 S4 113.9 104.3 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 367 SG REMARK 620 2 SF4 A 501 S1 119.9 REMARK 620 3 SF4 A 501 S2 101.6 104.7 REMARK 620 4 SF4 A 501 S4 120.4 103.8 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 384 SG REMARK 620 2 SF4 A 501 S1 118.2 REMARK 620 3 SF4 A 501 S3 113.2 104.4 REMARK 620 4 SF4 A 501 S4 111.2 104.0 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 424 SG REMARK 620 2 SF4 A 501 S1 111.7 REMARK 620 3 SF4 A 501 S2 117.7 104.9 REMARK 620 4 SF4 A 501 S3 113.3 104.1 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 287 SG REMARK 620 2 SF4 B 501 S1 109.1 REMARK 620 3 SF4 B 501 S3 119.4 103.9 REMARK 620 4 SF4 B 501 S4 113.5 105.3 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 367 SG REMARK 620 2 SF4 B 501 S2 116.5 REMARK 620 3 SF4 B 501 S3 103.8 105.0 REMARK 620 4 SF4 B 501 S4 121.7 103.9 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 501 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 384 SG REMARK 620 2 SF4 B 501 S1 112.3 REMARK 620 3 SF4 B 501 S2 117.6 104.3 REMARK 620 4 SF4 B 501 S4 112.6 105.1 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 501 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 424 SG REMARK 620 2 SF4 B 501 S1 112.0 REMARK 620 3 SF4 B 501 S2 114.9 104.2 REMARK 620 4 SF4 B 501 S3 115.6 103.9 105.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L9Q RELATED DB: PDB REMARK 900 SHORTER CONSTRUCT DBREF 6DHW A 266 457 UNP P49643 PRI2_HUMAN 266 457 DBREF 6DHW B 266 457 UNP P49643 PRI2_HUMAN 266 457 SEQRES 1 A 192 GLY ASN VAL GLY LYS ILE SER LEU ASP GLN ILE ASP LEU SEQRES 2 A 192 LEU SER THR LYS SER PHE PRO PRO CYS MET ARG GLN LEU SEQRES 3 A 192 HIS LYS ALA LEU ARG GLU ASN HIS HIS LEU ARG HIS GLY SEQRES 4 A 192 GLY ARG MET GLN TYR GLY LEU PHE LEU LYS GLY ILE GLY SEQRES 5 A 192 LEU THR LEU GLU GLN ALA LEU GLN PHE TRP LYS GLN GLU SEQRES 6 A 192 PHE ILE LYS GLY LYS MET ASP PRO ASP LYS PHE ASP LYS SEQRES 7 A 192 GLY TYR SER TYR ASN ILE ARG HIS SER PHE GLY LYS GLU SEQRES 8 A 192 GLY LYS ARG THR ASP TYR THR PRO PHE SER CYS LEU LYS SEQRES 9 A 192 ILE ILE LEU SER ASN PRO PRO SER GLN GLY ASP TYR HIS SEQRES 10 A 192 GLY CYS PRO PHE ARG HIS SER ASP PRO GLU LEU LEU LYS SEQRES 11 A 192 GLN LYS LEU GLN SER TYR LYS ILE SER PRO GLY GLY ILE SEQRES 12 A 192 SER GLN ILE LEU ASP LEU VAL LYS GLY THR HIS TYR GLN SEQRES 13 A 192 VAL ALA CYS GLN LYS TYR PHE GLU MET ILE HIS ASN VAL SEQRES 14 A 192 ASP ASP CYS GLY PHE SER LEU ASN HIS PRO ASN GLN PHE SEQRES 15 A 192 PHE CYS GLU SER GLN ARG ILE LEU ASN GLY SEQRES 1 B 192 GLY ASN VAL GLY LYS ILE SER LEU ASP GLN ILE ASP LEU SEQRES 2 B 192 LEU SER THR LYS SER PHE PRO PRO CYS MET ARG GLN LEU SEQRES 3 B 192 HIS LYS ALA LEU ARG GLU ASN HIS HIS LEU ARG HIS GLY SEQRES 4 B 192 GLY ARG MET GLN TYR GLY LEU PHE LEU LYS GLY ILE GLY SEQRES 5 B 192 LEU THR LEU GLU GLN ALA LEU GLN PHE TRP LYS GLN GLU SEQRES 6 B 192 PHE ILE LYS GLY LYS MET ASP PRO ASP LYS PHE ASP LYS SEQRES 7 B 192 GLY TYR SER TYR ASN ILE ARG HIS SER PHE GLY LYS GLU SEQRES 8 B 192 GLY LYS ARG THR ASP TYR THR PRO PHE SER CYS LEU LYS SEQRES 9 B 192 ILE ILE LEU SER ASN PRO PRO SER GLN GLY ASP TYR HIS SEQRES 10 B 192 GLY CYS PRO PHE ARG HIS SER ASP PRO GLU LEU LEU LYS SEQRES 11 B 192 GLN LYS LEU GLN SER TYR LYS ILE SER PRO GLY GLY ILE SEQRES 12 B 192 SER GLN ILE LEU ASP LEU VAL LYS GLY THR HIS TYR GLN SEQRES 13 B 192 VAL ALA CYS GLN LYS TYR PHE GLU MET ILE HIS ASN VAL SEQRES 14 B 192 ASP ASP CYS GLY PHE SER LEU ASN HIS PRO ASN GLN PHE SEQRES 15 B 192 PHE CYS GLU SER GLN ARG ILE LEU ASN GLY HET SF4 A 501 8 HET SO4 A 502 5 HET SO4 A 503 5 HET SF4 B 501 8 HET SO4 B 502 5 HET SO4 B 503 5 HET SO4 B 504 5 HET SO4 B 505 5 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM SO4 SULFATE ION FORMUL 3 SF4 2(FE4 S4) FORMUL 4 SO4 6(O4 S 2-) FORMUL 11 HOH *107(H2 O) HELIX 1 AA1 ILE A 276 PHE A 284 1 9 HELIX 2 AA2 PRO A 285 HIS A 299 1 15 HELIX 3 AA3 ARG A 302 ILE A 316 1 15 HELIX 4 AA4 SER A 366 SER A 373 1 8 HELIX 5 AA5 CYS A 384 SER A 389 1 6 HELIX 6 AA6 ASP A 390 TYR A 401 1 12 HELIX 7 AA7 SER A 404 GLY A 417 1 14 HELIX 8 AA8 HIS A 419 ASN A 433 1 15 HELIX 9 AA9 HIS A 443 ASN A 456 1 14 HELIX 10 AB1 SER B 272 GLN B 275 5 4 HELIX 11 AB2 ILE B 276 PHE B 284 1 9 HELIX 12 AB3 PRO B 285 HIS B 299 1 15 HELIX 13 AB4 ARG B 302 GLY B 317 1 16 HELIX 14 AB5 SER B 366 SER B 373 1 8 HELIX 15 AB6 CYS B 384 SER B 389 1 6 HELIX 16 AB7 ASP B 390 TYR B 401 1 12 HELIX 17 AB8 SER B 404 GLY B 417 1 14 HELIX 18 AB9 HIS B 419 HIS B 432 1 14 HELIX 19 AC1 HIS B 443 ASN B 456 1 14 SHEET 1 AA1 3 ILE A 271 SER A 272 0 SHEET 2 AA1 3 TYR A 345 HIS A 351 -1 O ILE A 349 N ILE A 271 SHEET 3 AA1 3 LEU A 318 LEU A 324 -1 N THR A 319 O ARG A 350 SHEET 1 AA2 2 LEU B 318 GLN B 322 0 SHEET 2 AA2 2 TYR B 347 HIS B 351 -1 O ASN B 348 N GLU B 321 SSBOND 1 CYS A 449 CYS B 449 1555 1555 2.05 LINK SG CYS A 287 FE1 SF4 A 501 1555 1555 2.56 LINK SG CYS A 367 FE3 SF4 A 501 1555 1555 2.61 LINK SG CYS A 384 FE2 SF4 A 501 1555 1555 2.58 LINK SG CYS A 424 FE4 SF4 A 501 1555 1555 2.56 LINK SG CYS B 287 FE2 SF4 B 501 1555 1555 2.55 LINK SG CYS B 367 FE1 SF4 B 501 1555 1555 2.54 LINK SG CYS B 384 FE3 SF4 B 501 1555 1555 2.58 LINK SG CYS B 424 FE4 SF4 B 501 1555 1555 2.55 SITE 1 AC1 5 PRO A 285 CYS A 287 CYS A 367 CYS A 384 SITE 2 AC1 5 CYS A 424 SITE 1 AC2 3 THR A 281 ARG A 289 LYS A 293 SITE 1 AC3 4 HIS A 299 TRP A 327 ASP A 342 TYR A 345 SITE 1 AC4 5 PRO B 285 CYS B 287 CYS B 367 CYS B 384 SITE 2 AC4 5 CYS B 424 SITE 1 AC5 5 ARG A 302 HIS A 303 ARG A 306 GLN B 329 SITE 2 AC5 5 GLU B 330 SITE 1 AC6 3 ARG B 302 HIS B 303 ARG B 306 SITE 1 AC7 3 GLN A 275 SER B 352 PHE B 353 SITE 1 AC8 3 THR B 281 ARG B 289 HOH B 602 CRYST1 110.193 52.560 88.774 90.00 115.08 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009075 0.000000 0.004248 0.00000 SCALE2 0.000000 0.019026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012438 0.00000