HEADER OXYGEN TRANSPORT 22-MAY-18 6DI4 TITLE RATIONAL MODIFICATION OF VANILLIN DERIVATIVES TO STEREOSPECIFICALLY TITLE 2 DESTABILIZE SICKLE HEMOGLOBIN POLYMER FORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: ALPHA-GLOBIN,HEMOGLOBIN ALPHA CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMOGLOBIN SUBUNIT BETA; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: BETA-GLOBIN,HEMOGLOBIN BETA CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS HEMOGLOBIN, RELAXED STATE, SICKLE CELL DISEASE, AROMATIC ALDEHYDE, KEYWDS 2 ANTISICKLING, OXYGEN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR P.P.PAGARE,F.N.MUSAYEV REVDAT 3 04-DEC-19 6DI4 1 REMARK REVDAT 2 17-OCT-18 6DI4 1 JRNL REVDAT 1 05-SEP-18 6DI4 0 JRNL AUTH T.M.DESHPANDE,P.P.PAGARE,M.S.GHATGE,Q.CHEN,F.N.MUSAYEV, JRNL AUTH 2 J.VENITZ,Y.ZHANG,O.ABDULMALIK,M.K.SAFO JRNL TITL RATIONAL MODIFICATION OF VANILLIN DERIVATIVES TO JRNL TITL 2 STEREOSPECIFICALLY DESTABILIZE SICKLE HEMOGLOBIN POLYMER JRNL TITL 3 FORMATION. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 956 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30289405 JRNL DOI 10.1107/S2059798318009919 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1636491.950 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 42867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2127 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6491 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 366 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 218 REMARK 3 SOLVENT ATOMS : 784 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.67000 REMARK 3 B22 (A**2) : 2.94000 REMARK 3 B33 (A**2) : -5.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.940 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 50.28 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234655. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR 2.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43079 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.130 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.68 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG6000, 100MM HEPES PH 7.4, REMARK 280 BATCH MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.34800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.46700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.70200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.46700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.34800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.70200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS D 2 O HOH D 301 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU D 3 CG LEU D 3 CD2 -0.342 REMARK 500 LEU D 3 C LEU D 3 O -0.130 REMARK 500 THR D 4 C THR D 4 O -0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU D 3 CA - CB - CG ANGL. DEV. = -14.5 DEGREES REMARK 500 LEU D 3 CB - CG - CD2 ANGL. DEV. = -31.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 56.52 -149.61 REMARK 500 HIS B 77 51.31 -142.77 REMARK 500 ASN B 80 58.47 -147.41 REMARK 500 CYS B 93 -63.02 -94.98 REMARK 500 LYS B 95 -62.05 -97.72 REMARK 500 ASP C 75 41.46 -152.75 REMARK 500 LEU D 3 112.65 83.67 REMARK 500 ASN D 80 57.24 -140.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 520 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 521 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B 522 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B 523 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH B 524 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH B 525 DISTANCE = 8.06 ANGSTROMS REMARK 525 HOH B 526 DISTANCE = 11.86 ANGSTROMS REMARK 525 HOH C 496 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH D 503 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH D 504 DISTANCE = 7.52 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 202 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 HEM A 202 NA 90.2 REMARK 620 3 HEM A 202 NB 89.7 89.2 REMARK 620 4 HEM A 202 NC 92.1 177.7 90.8 REMARK 620 5 HEM A 202 ND 91.0 91.3 179.2 88.8 REMARK 620 6 CMO A 201 C 174.5 95.3 90.1 82.4 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 202 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HEM B 202 NA 92.4 REMARK 620 3 HEM B 202 NB 93.2 90.0 REMARK 620 4 HEM B 202 NC 90.3 177.3 90.0 REMARK 620 5 HEM B 202 ND 88.2 89.4 178.6 90.6 REMARK 620 6 CMO B 201 C 173.8 92.8 90.2 84.5 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 202 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 87 NE2 REMARK 620 2 HEM C 202 NA 90.5 REMARK 620 3 HEM C 202 NB 90.6 89.4 REMARK 620 4 HEM C 202 NC 94.2 175.2 89.8 REMARK 620 5 HEM C 202 ND 91.4 90.8 177.9 89.9 REMARK 620 6 CMO C 201 C 179.2 90.0 89.9 85.2 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 202 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 92 NE2 REMARK 620 2 HEM D 202 NA 90.6 REMARK 620 3 HEM D 202 NB 89.0 89.5 REMARK 620 4 HEM D 202 NC 91.9 177.4 91.4 REMARK 620 5 HEM D 202 ND 89.8 89.2 178.2 89.9 REMARK 620 6 CMO D 201 C 173.5 95.8 91.8 81.7 89.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GJ1 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM D 202 DBREF 6DI4 A 1 141 UNP P69905 HBA_HUMAN 2 142 DBREF 6DI4 B 1 146 UNP P68871 HBB_HUMAN 2 147 DBREF 6DI4 C 1 141 UNP P69905 HBA_HUMAN 2 142 DBREF 6DI4 D 1 146 UNP P68871 HBB_HUMAN 2 147 SEQRES 1 A 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 A 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 A 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 A 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 A 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 A 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 A 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 A 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 A 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 A 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 A 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 B 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 B 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 B 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 B 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 B 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 B 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 B 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 B 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 B 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 B 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 B 146 LYS TYR HIS SEQRES 1 C 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 C 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 C 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 C 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 C 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 C 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 C 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 C 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 C 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 C 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 C 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 D 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 D 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 D 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 D 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 D 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 D 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 D 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 D 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 D 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 D 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 D 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 D 146 LYS TYR HIS HET CMO A 201 2 HET HEM A 202 43 HET GJ1 A 203 19 HET CMO B 201 2 HET HEM B 202 43 HET CMO C 201 2 HET HEM C 202 43 HET GJ1 C 203 19 HET CMO D 201 2 HET HEM D 202 43 HETNAM CMO CARBON MONOXIDE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GJ1 {6-[(4-METHOXY-2-METHYLPHENOXY)METHYL]PYRIDIN-2- HETNAM 2 GJ1 YL}METHANOL HETSYN HEM HEME FORMUL 5 CMO 4(C O) FORMUL 6 HEM 4(C34 H32 FE N4 O4) FORMUL 7 GJ1 2(C15 H17 N O3) FORMUL 15 HOH *784(H2 O) HELIX 1 AA1 SER A 3 LYS A 16 1 14 HELIX 2 AA2 VAL A 17 ALA A 19 5 3 HELIX 3 AA3 HIS A 20 PHE A 36 1 17 HELIX 4 AA4 PRO A 37 PHE A 43 5 7 HELIX 5 AA5 SER A 52 HIS A 72 1 21 HELIX 6 AA6 ASP A 75 LEU A 80 1 6 HELIX 7 AA7 LEU A 80 HIS A 89 1 10 HELIX 8 AA8 ASP A 94 LEU A 113 1 20 HELIX 9 AA9 THR A 118 SER A 138 1 21 HELIX 10 AB1 THR B 4 GLY B 16 1 13 HELIX 11 AB2 GLU B 22 TYR B 35 1 14 HELIX 12 AB3 PRO B 36 GLY B 46 5 11 HELIX 13 AB4 THR B 50 ASN B 57 1 8 HELIX 14 AB5 ASN B 57 ALA B 76 1 20 HELIX 15 AB6 HIS B 77 ASP B 79 5 3 HELIX 16 AB7 ASN B 80 PHE B 85 1 6 HELIX 17 AB8 PHE B 85 LYS B 95 1 11 HELIX 18 AB9 ASP B 99 GLY B 119 1 21 HELIX 19 AC1 LYS B 120 PHE B 122 5 3 HELIX 20 AC2 THR B 123 ALA B 142 1 20 HELIX 21 AC3 SER C 3 GLY C 18 1 16 HELIX 22 AC4 HIS C 20 PHE C 36 1 17 HELIX 23 AC5 PRO C 37 PHE C 43 5 7 HELIX 24 AC6 SER C 52 HIS C 72 1 21 HELIX 25 AC7 ASP C 75 LEU C 80 1 6 HELIX 26 AC8 LEU C 80 HIS C 89 1 10 HELIX 27 AC9 ASP C 94 LEU C 113 1 20 HELIX 28 AD1 THR C 118 SER C 138 1 21 HELIX 29 AD2 THR D 4 GLY D 16 1 13 HELIX 30 AD3 GLU D 22 TYR D 35 1 14 HELIX 31 AD4 PRO D 36 GLY D 46 5 11 HELIX 32 AD5 THR D 50 ASN D 57 1 8 HELIX 33 AD6 ASN D 57 ALA D 76 1 20 HELIX 34 AD7 ASN D 80 PHE D 85 1 6 HELIX 35 AD8 PHE D 85 ASP D 94 1 10 HELIX 36 AD9 PRO D 100 GLY D 119 1 20 HELIX 37 AE1 LYS D 120 PHE D 122 5 3 HELIX 38 AE2 THR D 123 ALA D 142 1 20 HELIX 39 AE3 HIS D 143 HIS D 146 5 4 LINK N VAL A 1 C1 GJ1 A 203 1555 1555 1.39 LINK NE2 HIS A 87 FE HEM A 202 1555 1555 2.03 LINK NE2 HIS B 92 FE HEM B 202 1555 1555 2.02 LINK N VAL C 1 C1 GJ1 C 203 1555 1555 1.39 LINK NE2 HIS C 87 FE HEM C 202 1555 1555 2.05 LINK NE2 HIS D 92 FE HEM D 202 1555 1555 2.03 LINK C CMO A 201 FE HEM A 202 1555 1555 1.85 LINK C CMO D 201 FE HEM D 202 1555 1555 1.86 LINK C CMO B 201 FE HEM B 202 1555 1555 1.86 LINK C CMO C 201 FE HEM C 202 1555 1555 1.87 SITE 1 AC1 3 HIS A 58 VAL A 62 HEM A 202 SITE 1 AC2 20 TYR A 42 PHE A 43 HIS A 45 PHE A 46 SITE 2 AC2 20 HIS A 58 LYS A 61 ALA A 65 LEU A 86 SITE 3 AC2 20 HIS A 87 LEU A 91 ASN A 97 PHE A 98 SITE 4 AC2 20 LEU A 101 VAL A 132 CMO A 201 HOH A 311 SITE 5 AC2 20 HOH A 324 HOH A 332 HOH A 333 HOH A 361 SITE 1 AC3 6 VAL A 1 PRO A 77 SER A 131 THR A 134 SITE 2 AC3 6 THR C 134 GJ1 C 203 SITE 1 AC4 3 HIS B 63 VAL B 67 HEM B 202 SITE 1 AC5 19 THR B 38 PHE B 41 PHE B 42 HIS B 63 SITE 2 AC5 19 LYS B 66 LEU B 88 HIS B 92 LEU B 96 SITE 3 AC5 19 VAL B 98 ASN B 102 PHE B 103 LEU B 106 SITE 4 AC5 19 LEU B 141 CMO B 201 HOH B 302 HOH B 311 SITE 5 AC5 19 HOH B 314 HOH B 319 HOH B 392 SITE 1 AC6 4 LEU C 29 HIS C 58 VAL C 62 HEM C 202 SITE 1 AC7 19 TYR C 42 PHE C 43 PHE C 46 HIS C 58 SITE 2 AC7 19 LYS C 61 LEU C 86 HIS C 87 LEU C 91 SITE 3 AC7 19 VAL C 93 ASN C 97 PHE C 98 LEU C 101 SITE 4 AC7 19 CMO C 201 HOH C 307 HOH C 308 HOH C 327 SITE 5 AC7 19 HOH C 331 HOH C 413 HOH C 415 SITE 1 AC8 4 LEU D 28 HIS D 63 VAL D 67 HEM D 202 SITE 1 AC9 19 LYS C 90 ARG C 141 HOH C 387 PHE D 41 SITE 2 AC9 19 PHE D 42 HIS D 63 LYS D 66 LEU D 91 SITE 3 AC9 19 HIS D 92 LEU D 96 VAL D 98 ASN D 102 SITE 4 AC9 19 LEU D 106 LEU D 141 CMO D 201 HOH D 304 SITE 5 AC9 19 HOH D 313 HOH D 322 HOH D 368 CRYST1 62.696 83.404 104.934 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009530 0.00000