data_6DIP # _entry.id 6DIP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.298 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6DIP WWPDB D_1000234725 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2018-09-05 _pdbx_database_PDB_obs_spr.pdb_id 6MAL _pdbx_database_PDB_obs_spr.replace_pdb_id 6DIP _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DIP _pdbx_database_status.recvd_initial_deposition_date 2018-05-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Estrella, M.A.' 1 0000-0002-1721-9418 'Du, J.' 2 ? 'Korennykh, A.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biorxiv _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal Structure of Human Nocturnin Catalytic Domain' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1101/330514 _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Estrella, M.A.' 1 ? primary 'Du, J.' 2 ? primary 'Korennykh, A.' 3 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6DIP _cell.details ? _cell.formula_units_Z ? _cell.length_a 61.400 _cell.length_a_esd ? _cell.length_b 61.400 _cell.length_b_esd ? _cell.length_c 155.300 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Nocturnin 34876.480 1 3.1.13.4 ? 'C-terminal domain' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 37 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Carbon catabolite repression 4-like protein,Circadian deadenylase NOC' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PPRFQRDFVDLRTDCPSTHPPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFD TFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKTNQVAIAQTLECKESGRQFC IAVTHLKARTGWERFRSAQGCDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPY TTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDFSFTEE ; _entity_poly.pdbx_seq_one_letter_code_can ;PPRFQRDFVDLRTDCPSTHPPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFD TFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKTNQVAIAQTLECKESGRQFC IAVTHLKARTGWERFRSAQGCDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPY TTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDFSFTEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 PRO n 1 3 ARG n 1 4 PHE n 1 5 GLN n 1 6 ARG n 1 7 ASP n 1 8 PHE n 1 9 VAL n 1 10 ASP n 1 11 LEU n 1 12 ARG n 1 13 THR n 1 14 ASP n 1 15 CYS n 1 16 PRO n 1 17 SER n 1 18 THR n 1 19 HIS n 1 20 PRO n 1 21 PRO n 1 22 ILE n 1 23 ARG n 1 24 VAL n 1 25 MET n 1 26 GLN n 1 27 TRP n 1 28 ASN n 1 29 ILE n 1 30 LEU n 1 31 ALA n 1 32 GLN n 1 33 ALA n 1 34 LEU n 1 35 GLY n 1 36 GLU n 1 37 GLY n 1 38 LYS n 1 39 ASP n 1 40 ASN n 1 41 PHE n 1 42 VAL n 1 43 GLN n 1 44 CYS n 1 45 PRO n 1 46 VAL n 1 47 GLU n 1 48 ALA n 1 49 LEU n 1 50 LYS n 1 51 TRP n 1 52 GLU n 1 53 GLU n 1 54 ARG n 1 55 LYS n 1 56 CYS n 1 57 LEU n 1 58 ILE n 1 59 LEU n 1 60 GLU n 1 61 GLU n 1 62 ILE n 1 63 LEU n 1 64 ALA n 1 65 TYR n 1 66 GLN n 1 67 PRO n 1 68 ASP n 1 69 ILE n 1 70 LEU n 1 71 CYS n 1 72 LEU n 1 73 GLN n 1 74 GLU n 1 75 VAL n 1 76 ASP n 1 77 HIS n 1 78 TYR n 1 79 PHE n 1 80 ASP n 1 81 THR n 1 82 PHE n 1 83 GLN n 1 84 PRO n 1 85 LEU n 1 86 LEU n 1 87 SER n 1 88 ARG n 1 89 LEU n 1 90 GLY n 1 91 TYR n 1 92 GLN n 1 93 GLY n 1 94 THR n 1 95 PHE n 1 96 PHE n 1 97 PRO n 1 98 LYS n 1 99 PRO n 1 100 TRP n 1 101 SER n 1 102 PRO n 1 103 CYS n 1 104 LEU n 1 105 ASP n 1 106 VAL n 1 107 GLU n 1 108 HIS n 1 109 ASN n 1 110 ASN n 1 111 GLY n 1 112 PRO n 1 113 ASP n 1 114 GLY n 1 115 CYS n 1 116 ALA n 1 117 LEU n 1 118 PHE n 1 119 PHE n 1 120 LEU n 1 121 GLN n 1 122 ASN n 1 123 ARG n 1 124 PHE n 1 125 LYS n 1 126 LEU n 1 127 VAL n 1 128 ASN n 1 129 SER n 1 130 ALA n 1 131 ASN n 1 132 ILE n 1 133 ARG n 1 134 LEU n 1 135 THR n 1 136 ALA n 1 137 MET n 1 138 THR n 1 139 LEU n 1 140 LYS n 1 141 THR n 1 142 ASN n 1 143 GLN n 1 144 VAL n 1 145 ALA n 1 146 ILE n 1 147 ALA n 1 148 GLN n 1 149 THR n 1 150 LEU n 1 151 GLU n 1 152 CYS n 1 153 LYS n 1 154 GLU n 1 155 SER n 1 156 GLY n 1 157 ARG n 1 158 GLN n 1 159 PHE n 1 160 CYS n 1 161 ILE n 1 162 ALA n 1 163 VAL n 1 164 THR n 1 165 HIS n 1 166 LEU n 1 167 LYS n 1 168 ALA n 1 169 ARG n 1 170 THR n 1 171 GLY n 1 172 TRP n 1 173 GLU n 1 174 ARG n 1 175 PHE n 1 176 ARG n 1 177 SER n 1 178 ALA n 1 179 GLN n 1 180 GLY n 1 181 CYS n 1 182 ASP n 1 183 LEU n 1 184 LEU n 1 185 GLN n 1 186 ASN n 1 187 LEU n 1 188 GLN n 1 189 ASN n 1 190 ILE n 1 191 THR n 1 192 GLN n 1 193 GLY n 1 194 ALA n 1 195 LYS n 1 196 ILE n 1 197 PRO n 1 198 LEU n 1 199 ILE n 1 200 VAL n 1 201 CYS n 1 202 GLY n 1 203 ASP n 1 204 PHE n 1 205 ASN n 1 206 ALA n 1 207 GLU n 1 208 PRO n 1 209 THR n 1 210 GLU n 1 211 GLU n 1 212 VAL n 1 213 TYR n 1 214 LYS n 1 215 HIS n 1 216 PHE n 1 217 ALA n 1 218 SER n 1 219 SER n 1 220 SER n 1 221 LEU n 1 222 ASN n 1 223 LEU n 1 224 ASN n 1 225 SER n 1 226 ALA n 1 227 TYR n 1 228 LYS n 1 229 LEU n 1 230 LEU n 1 231 SER n 1 232 ALA n 1 233 ASP n 1 234 GLY n 1 235 GLN n 1 236 SER n 1 237 GLU n 1 238 PRO n 1 239 PRO n 1 240 TYR n 1 241 THR n 1 242 THR n 1 243 TRP n 1 244 LYS n 1 245 ILE n 1 246 ARG n 1 247 THR n 1 248 SER n 1 249 GLY n 1 250 GLU n 1 251 CYS n 1 252 ARG n 1 253 HIS n 1 254 THR n 1 255 LEU n 1 256 ASP n 1 257 TYR n 1 258 ILE n 1 259 TRP n 1 260 TYR n 1 261 SER n 1 262 LYS n 1 263 HIS n 1 264 ALA n 1 265 LEU n 1 266 ASN n 1 267 VAL n 1 268 ARG n 1 269 SER n 1 270 ALA n 1 271 LEU n 1 272 ASP n 1 273 LEU n 1 274 LEU n 1 275 THR n 1 276 GLU n 1 277 GLU n 1 278 GLN n 1 279 ILE n 1 280 GLY n 1 281 PRO n 1 282 ASN n 1 283 ARG n 1 284 LEU n 1 285 PRO n 1 286 SER n 1 287 PHE n 1 288 ASN n 1 289 TYR n 1 290 PRO n 1 291 SER n 1 292 ASP n 1 293 HIS n 1 294 LEU n 1 295 SER n 1 296 LEU n 1 297 VAL n 1 298 CYS n 1 299 ASP n 1 300 PHE n 1 301 SER n 1 302 PHE n 1 303 THR n 1 304 GLU n 1 305 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 305 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NOCT, CCR4, CCRN4L, NOC' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NOCT_HUMAN _struct_ref.pdbx_db_accession Q9UK39 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PPRFQRDFVDLRTDCPSTHPPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFD TFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKTNQVAIAQTLECKESGRQFC IAVTHLKARTGWERFRSAQGCDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPY TTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDFSFTEE ; _struct_ref.pdbx_align_begin 122 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6DIP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 305 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UK39 _struct_ref_seq.db_align_beg 122 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 426 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 122 _struct_ref_seq.pdbx_auth_seq_align_end 426 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DIP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'magnesium chloride, HEPES, PEG 400' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 80 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 300K' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-11-03 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6DIP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.6 _reflns.d_resolution_low 30.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9820 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.53 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.063 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.954 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.69 _reflns_shell.d_res_low 2.74 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DIP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.600 _refine.ls_d_res_low 28.941 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9659 _refine.ls_number_reflns_R_free 481 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.09 _refine.ls_percent_reflns_R_free 4.98 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2482 _refine.ls_R_factor_R_free 0.3055 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2452 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3NGO _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.19 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.43 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2427 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 2465 _refine_hist.d_res_high 2.600 _refine_hist.d_res_low 28.941 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.003 ? 2491 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.822 ? 3391 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 21.732 ? 1515 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.058 ? 372 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 443 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.6000 2.9759 . . 156 2986 100.00 . . . 0.3740 . 0.2921 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9759 3.7481 . . 158 3011 99.00 . . . 0.3268 . 0.2454 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7481 28.9428 . . 167 3181 99.00 . . . 0.2667 . 0.2277 . . . . . . . . . . # _struct.entry_id 6DIP _struct.title 'Structure of human Nocturnin C-terminal domain' _struct.pdbx_descriptor 'Nocturnin (E.C.3.1.13.4)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DIP _struct_keywords.text 'Nocturnin, CCRN4L, Noct, CCR4, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 31 ? GLY A 37 ? ALA A 152 GLY A 158 1 ? 7 HELX_P HELX_P2 AA2 LYS A 50 ? GLN A 66 ? LYS A 171 GLN A 187 1 ? 17 HELX_P HELX_P3 AA3 THR A 81 ? ARG A 88 ? THR A 202 ARG A 209 1 ? 8 HELX_P HELX_P4 AA4 SER A 101 ? VAL A 106 ? SER A 222 VAL A 227 5 ? 6 HELX_P HELX_P5 AA5 TRP A 172 ? THR A 191 ? TRP A 293 THR A 312 1 ? 20 HELX_P HELX_P6 AA6 GLU A 210 ? SER A 218 ? GLU A 331 SER A 339 1 ? 9 HELX_P HELX_P7 AA7 TYR A 227 ? SER A 231 ? TYR A 348 SER A 352 5 ? 5 HELX_P HELX_P8 AA8 THR A 275 ? GLY A 280 ? THR A 396 GLY A 401 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id metalc1 _struct_conn.conn_type_id metalc _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 74 _struct_conn.ptnr1_label_atom_id OE2 _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id MG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 195 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.311 _struct_conn.pdbx_value_order ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 284 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 405 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 285 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 406 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -7.26 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 3 ? AA3 ? 6 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 8 ? ASP A 10 ? PHE A 129 ASP A 131 AA1 2 LEU A 265 ? LEU A 271 ? LEU A 386 LEU A 392 AA1 3 LEU A 296 ? PHE A 302 ? LEU A 417 PHE A 423 AA1 4 ILE A 22 ? ASN A 28 ? ILE A 143 ASN A 149 AA1 5 ILE A 69 ? VAL A 75 ? ILE A 190 VAL A 196 AA1 6 GLY A 114 ? LEU A 120 ? GLY A 235 LEU A 241 AA1 7 TYR A 91 ? PRO A 97 ? TYR A 212 PRO A 218 AA2 1 PHE A 124 ? ASN A 128 ? PHE A 245 ASN A 249 AA2 2 LEU A 139 ? CYS A 152 ? LEU A 260 CYS A 273 AA2 3 ASN A 131 ? ALA A 136 ? ASN A 252 ALA A 257 AA3 1 PHE A 124 ? ASN A 128 ? PHE A 245 ASN A 249 AA3 2 LEU A 139 ? CYS A 152 ? LEU A 260 CYS A 273 AA3 3 GLN A 158 ? HIS A 165 ? GLN A 279 HIS A 286 AA3 4 LEU A 198 ? ASP A 203 ? LEU A 319 ASP A 324 AA3 5 ASP A 256 ? SER A 261 ? ASP A 377 SER A 382 AA3 6 LEU A 223 ? SER A 225 ? LEU A 344 SER A 346 AA4 1 THR A 242 ? ILE A 245 ? THR A 363 ILE A 366 AA4 2 GLU A 250 ? HIS A 253 ? GLU A 371 HIS A 374 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 9 ? N VAL A 130 O ALA A 270 ? O ALA A 391 AA1 2 3 N ASN A 266 ? N ASN A 387 O SER A 301 ? O SER A 422 AA1 3 4 O LEU A 296 ? O LEU A 417 N GLN A 26 ? N GLN A 147 AA1 4 5 N MET A 25 ? N MET A 146 O CYS A 71 ? O CYS A 192 AA1 5 6 N LEU A 70 ? N LEU A 191 O PHE A 118 ? O PHE A 239 AA1 6 7 O PHE A 119 ? O PHE A 240 N GLN A 92 ? N GLN A 213 AA2 1 2 N VAL A 127 ? N VAL A 248 O THR A 149 ? O THR A 270 AA2 2 3 O ALA A 145 ? O ALA A 266 N ILE A 132 ? N ILE A 253 AA3 1 2 N VAL A 127 ? N VAL A 248 O THR A 149 ? O THR A 270 AA3 2 3 N LEU A 150 ? N LEU A 271 O PHE A 159 ? O PHE A 280 AA3 3 4 N CYS A 160 ? N CYS A 281 O ILE A 199 ? O ILE A 320 AA3 4 5 N VAL A 200 ? N VAL A 321 O TRP A 259 ? O TRP A 380 AA3 5 6 O TYR A 260 ? O TYR A 381 N ASN A 224 ? N ASN A 345 AA4 1 2 N LYS A 244 ? N LYS A 365 O CYS A 251 ? O CYS A 372 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 501 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'binding site for residue MG A 501' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id GLU _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 74 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id GLU _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 195 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _atom_sites.entry_id 6DIP _atom_sites.fract_transf_matrix[1][1] 0.016287 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016287 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006439 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 122 122 PRO PRO A . n A 1 2 PRO 2 123 123 PRO PRO A . n A 1 3 ARG 3 124 124 ARG ARG A . n A 1 4 PHE 4 125 125 PHE PHE A . n A 1 5 GLN 5 126 126 GLN GLN A . n A 1 6 ARG 6 127 127 ARG ARG A . n A 1 7 ASP 7 128 128 ASP ASP A . n A 1 8 PHE 8 129 129 PHE PHE A . n A 1 9 VAL 9 130 130 VAL VAL A . n A 1 10 ASP 10 131 131 ASP ASP A . n A 1 11 LEU 11 132 132 LEU LEU A . n A 1 12 ARG 12 133 133 ARG ARG A . n A 1 13 THR 13 134 134 THR THR A . n A 1 14 ASP 14 135 135 ASP ASP A . n A 1 15 CYS 15 136 136 CYS CYS A . n A 1 16 PRO 16 137 137 PRO PRO A . n A 1 17 SER 17 138 138 SER SER A . n A 1 18 THR 18 139 139 THR THR A . n A 1 19 HIS 19 140 140 HIS HIS A . n A 1 20 PRO 20 141 141 PRO PRO A . n A 1 21 PRO 21 142 142 PRO PRO A . n A 1 22 ILE 22 143 143 ILE ILE A . n A 1 23 ARG 23 144 144 ARG ARG A . n A 1 24 VAL 24 145 145 VAL VAL A . n A 1 25 MET 25 146 146 MET MET A . n A 1 26 GLN 26 147 147 GLN GLN A . n A 1 27 TRP 27 148 148 TRP TRP A . n A 1 28 ASN 28 149 149 ASN ASN A . n A 1 29 ILE 29 150 150 ILE ILE A . n A 1 30 LEU 30 151 151 LEU LEU A . n A 1 31 ALA 31 152 152 ALA ALA A . n A 1 32 GLN 32 153 153 GLN GLN A . n A 1 33 ALA 33 154 154 ALA ALA A . n A 1 34 LEU 34 155 155 LEU LEU A . n A 1 35 GLY 35 156 156 GLY GLY A . n A 1 36 GLU 36 157 157 GLU GLU A . n A 1 37 GLY 37 158 158 GLY GLY A . n A 1 38 LYS 38 159 159 LYS LYS A . n A 1 39 ASP 39 160 160 ASP ASP A . n A 1 40 ASN 40 161 161 ASN ASN A . n A 1 41 PHE 41 162 162 PHE PHE A . n A 1 42 VAL 42 163 163 VAL VAL A . n A 1 43 GLN 43 164 164 GLN GLN A . n A 1 44 CYS 44 165 165 CYS CYS A . n A 1 45 PRO 45 166 166 PRO PRO A . n A 1 46 VAL 46 167 167 VAL VAL A . n A 1 47 GLU 47 168 168 GLU GLU A . n A 1 48 ALA 48 169 169 ALA ALA A . n A 1 49 LEU 49 170 170 LEU LEU A . n A 1 50 LYS 50 171 171 LYS LYS A . n A 1 51 TRP 51 172 172 TRP TRP A . n A 1 52 GLU 52 173 173 GLU GLU A . n A 1 53 GLU 53 174 174 GLU GLU A . n A 1 54 ARG 54 175 175 ARG ARG A . n A 1 55 LYS 55 176 176 LYS LYS A . n A 1 56 CYS 56 177 177 CYS CYS A . n A 1 57 LEU 57 178 178 LEU LEU A . n A 1 58 ILE 58 179 179 ILE ILE A . n A 1 59 LEU 59 180 180 LEU LEU A . n A 1 60 GLU 60 181 181 GLU GLU A . n A 1 61 GLU 61 182 182 GLU GLU A . n A 1 62 ILE 62 183 183 ILE ILE A . n A 1 63 LEU 63 184 184 LEU LEU A . n A 1 64 ALA 64 185 185 ALA ALA A . n A 1 65 TYR 65 186 186 TYR TYR A . n A 1 66 GLN 66 187 187 GLN GLN A . n A 1 67 PRO 67 188 188 PRO PRO A . n A 1 68 ASP 68 189 189 ASP ASP A . n A 1 69 ILE 69 190 190 ILE ILE A . n A 1 70 LEU 70 191 191 LEU LEU A . n A 1 71 CYS 71 192 192 CYS CYS A . n A 1 72 LEU 72 193 193 LEU LEU A . n A 1 73 GLN 73 194 194 GLN GLN A . n A 1 74 GLU 74 195 195 GLU GLU A . n A 1 75 VAL 75 196 196 VAL VAL A . n A 1 76 ASP 76 197 197 ASP ASP A . n A 1 77 HIS 77 198 198 HIS HIS A . n A 1 78 TYR 78 199 199 TYR TYR A . n A 1 79 PHE 79 200 200 PHE PHE A . n A 1 80 ASP 80 201 201 ASP ASP A . n A 1 81 THR 81 202 202 THR THR A . n A 1 82 PHE 82 203 203 PHE PHE A . n A 1 83 GLN 83 204 204 GLN GLN A . n A 1 84 PRO 84 205 205 PRO PRO A . n A 1 85 LEU 85 206 206 LEU LEU A . n A 1 86 LEU 86 207 207 LEU LEU A . n A 1 87 SER 87 208 208 SER SER A . n A 1 88 ARG 88 209 209 ARG ARG A . n A 1 89 LEU 89 210 210 LEU LEU A . n A 1 90 GLY 90 211 211 GLY GLY A . n A 1 91 TYR 91 212 212 TYR TYR A . n A 1 92 GLN 92 213 213 GLN GLN A . n A 1 93 GLY 93 214 214 GLY GLY A . n A 1 94 THR 94 215 215 THR THR A . n A 1 95 PHE 95 216 216 PHE PHE A . n A 1 96 PHE 96 217 217 PHE PHE A . n A 1 97 PRO 97 218 218 PRO PRO A . n A 1 98 LYS 98 219 219 LYS LYS A . n A 1 99 PRO 99 220 220 PRO PRO A . n A 1 100 TRP 100 221 221 TRP TRP A . n A 1 101 SER 101 222 222 SER SER A . n A 1 102 PRO 102 223 223 PRO PRO A . n A 1 103 CYS 103 224 224 CYS CYS A . n A 1 104 LEU 104 225 225 LEU LEU A . n A 1 105 ASP 105 226 226 ASP ASP A . n A 1 106 VAL 106 227 227 VAL VAL A . n A 1 107 GLU 107 228 228 GLU GLU A . n A 1 108 HIS 108 229 229 HIS HIS A . n A 1 109 ASN 109 230 230 ASN ASN A . n A 1 110 ASN 110 231 231 ASN ASN A . n A 1 111 GLY 111 232 232 GLY GLY A . n A 1 112 PRO 112 233 233 PRO PRO A . n A 1 113 ASP 113 234 234 ASP ASP A . n A 1 114 GLY 114 235 235 GLY GLY A . n A 1 115 CYS 115 236 236 CYS CYS A . n A 1 116 ALA 116 237 237 ALA ALA A . n A 1 117 LEU 117 238 238 LEU LEU A . n A 1 118 PHE 118 239 239 PHE PHE A . n A 1 119 PHE 119 240 240 PHE PHE A . n A 1 120 LEU 120 241 241 LEU LEU A . n A 1 121 GLN 121 242 242 GLN GLN A . n A 1 122 ASN 122 243 243 ASN ASN A . n A 1 123 ARG 123 244 244 ARG ARG A . n A 1 124 PHE 124 245 245 PHE PHE A . n A 1 125 LYS 125 246 246 LYS LYS A . n A 1 126 LEU 126 247 247 LEU LEU A . n A 1 127 VAL 127 248 248 VAL VAL A . n A 1 128 ASN 128 249 249 ASN ASN A . n A 1 129 SER 129 250 250 SER SER A . n A 1 130 ALA 130 251 251 ALA ALA A . n A 1 131 ASN 131 252 252 ASN ASN A . n A 1 132 ILE 132 253 253 ILE ILE A . n A 1 133 ARG 133 254 254 ARG ARG A . n A 1 134 LEU 134 255 255 LEU LEU A . n A 1 135 THR 135 256 256 THR THR A . n A 1 136 ALA 136 257 257 ALA ALA A . n A 1 137 MET 137 258 258 MET MET A . n A 1 138 THR 138 259 259 THR THR A . n A 1 139 LEU 139 260 260 LEU LEU A . n A 1 140 LYS 140 261 261 LYS LYS A . n A 1 141 THR 141 262 262 THR THR A . n A 1 142 ASN 142 263 263 ASN ASN A . n A 1 143 GLN 143 264 264 GLN GLN A . n A 1 144 VAL 144 265 265 VAL VAL A . n A 1 145 ALA 145 266 266 ALA ALA A . n A 1 146 ILE 146 267 267 ILE ILE A . n A 1 147 ALA 147 268 268 ALA ALA A . n A 1 148 GLN 148 269 269 GLN GLN A . n A 1 149 THR 149 270 270 THR THR A . n A 1 150 LEU 150 271 271 LEU LEU A . n A 1 151 GLU 151 272 272 GLU GLU A . n A 1 152 CYS 152 273 273 CYS CYS A . n A 1 153 LYS 153 274 274 LYS LYS A . n A 1 154 GLU 154 275 275 GLU GLU A . n A 1 155 SER 155 276 276 SER SER A . n A 1 156 GLY 156 277 277 GLY GLY A . n A 1 157 ARG 157 278 278 ARG ARG A . n A 1 158 GLN 158 279 279 GLN GLN A . n A 1 159 PHE 159 280 280 PHE PHE A . n A 1 160 CYS 160 281 281 CYS CYS A . n A 1 161 ILE 161 282 282 ILE ILE A . n A 1 162 ALA 162 283 283 ALA ALA A . n A 1 163 VAL 163 284 284 VAL VAL A . n A 1 164 THR 164 285 285 THR THR A . n A 1 165 HIS 165 286 286 HIS HIS A . n A 1 166 LEU 166 287 287 LEU LEU A . n A 1 167 LYS 167 288 288 LYS LYS A . n A 1 168 ALA 168 289 289 ALA ALA A . n A 1 169 ARG 169 290 290 ARG ARG A . n A 1 170 THR 170 291 291 THR THR A . n A 1 171 GLY 171 292 292 GLY GLY A . n A 1 172 TRP 172 293 293 TRP TRP A . n A 1 173 GLU 173 294 294 GLU GLU A . n A 1 174 ARG 174 295 295 ARG ARG A . n A 1 175 PHE 175 296 296 PHE PHE A . n A 1 176 ARG 176 297 297 ARG ARG A . n A 1 177 SER 177 298 298 SER SER A . n A 1 178 ALA 178 299 299 ALA ALA A . n A 1 179 GLN 179 300 300 GLN GLN A . n A 1 180 GLY 180 301 301 GLY GLY A . n A 1 181 CYS 181 302 302 CYS CYS A . n A 1 182 ASP 182 303 303 ASP ASP A . n A 1 183 LEU 183 304 304 LEU LEU A . n A 1 184 LEU 184 305 305 LEU LEU A . n A 1 185 GLN 185 306 306 GLN GLN A . n A 1 186 ASN 186 307 307 ASN ASN A . n A 1 187 LEU 187 308 308 LEU LEU A . n A 1 188 GLN 188 309 309 GLN GLN A . n A 1 189 ASN 189 310 310 ASN ASN A . n A 1 190 ILE 190 311 311 ILE ILE A . n A 1 191 THR 191 312 312 THR THR A . n A 1 192 GLN 192 313 313 GLN GLN A . n A 1 193 GLY 193 314 314 GLY GLY A . n A 1 194 ALA 194 315 315 ALA ALA A . n A 1 195 LYS 195 316 316 LYS LYS A . n A 1 196 ILE 196 317 317 ILE ILE A . n A 1 197 PRO 197 318 318 PRO PRO A . n A 1 198 LEU 198 319 319 LEU LEU A . n A 1 199 ILE 199 320 320 ILE ILE A . n A 1 200 VAL 200 321 321 VAL VAL A . n A 1 201 CYS 201 322 322 CYS CYS A . n A 1 202 GLY 202 323 323 GLY GLY A . n A 1 203 ASP 203 324 324 ASP ASP A . n A 1 204 PHE 204 325 325 PHE PHE A . n A 1 205 ASN 205 326 326 ASN ASN A . n A 1 206 ALA 206 327 327 ALA ALA A . n A 1 207 GLU 207 328 328 GLU GLU A . n A 1 208 PRO 208 329 329 PRO PRO A . n A 1 209 THR 209 330 330 THR THR A . n A 1 210 GLU 210 331 331 GLU GLU A . n A 1 211 GLU 211 332 332 GLU GLU A . n A 1 212 VAL 212 333 333 VAL VAL A . n A 1 213 TYR 213 334 334 TYR TYR A . n A 1 214 LYS 214 335 335 LYS LYS A . n A 1 215 HIS 215 336 336 HIS HIS A . n A 1 216 PHE 216 337 337 PHE PHE A . n A 1 217 ALA 217 338 338 ALA ALA A . n A 1 218 SER 218 339 339 SER SER A . n A 1 219 SER 219 340 340 SER SER A . n A 1 220 SER 220 341 341 SER SER A . n A 1 221 LEU 221 342 342 LEU LEU A . n A 1 222 ASN 222 343 343 ASN ASN A . n A 1 223 LEU 223 344 344 LEU LEU A . n A 1 224 ASN 224 345 345 ASN ASN A . n A 1 225 SER 225 346 346 SER SER A . n A 1 226 ALA 226 347 347 ALA ALA A . n A 1 227 TYR 227 348 348 TYR TYR A . n A 1 228 LYS 228 349 349 LYS LYS A . n A 1 229 LEU 229 350 350 LEU LEU A . n A 1 230 LEU 230 351 351 LEU LEU A . n A 1 231 SER 231 352 352 SER SER A . n A 1 232 ALA 232 353 353 ALA ALA A . n A 1 233 ASP 233 354 354 ASP ASP A . n A 1 234 GLY 234 355 355 GLY GLY A . n A 1 235 GLN 235 356 356 GLN GLN A . n A 1 236 SER 236 357 357 SER SER A . n A 1 237 GLU 237 358 358 GLU GLU A . n A 1 238 PRO 238 359 359 PRO PRO A . n A 1 239 PRO 239 360 360 PRO PRO A . n A 1 240 TYR 240 361 361 TYR TYR A . n A 1 241 THR 241 362 362 THR THR A . n A 1 242 THR 242 363 363 THR THR A . n A 1 243 TRP 243 364 364 TRP TRP A . n A 1 244 LYS 244 365 365 LYS LYS A . n A 1 245 ILE 245 366 366 ILE ILE A . n A 1 246 ARG 246 367 367 ARG ARG A . n A 1 247 THR 247 368 368 THR THR A . n A 1 248 SER 248 369 369 SER SER A . n A 1 249 GLY 249 370 370 GLY GLY A . n A 1 250 GLU 250 371 371 GLU GLU A . n A 1 251 CYS 251 372 372 CYS CYS A . n A 1 252 ARG 252 373 373 ARG ARG A . n A 1 253 HIS 253 374 374 HIS HIS A . n A 1 254 THR 254 375 375 THR THR A . n A 1 255 LEU 255 376 376 LEU LEU A . n A 1 256 ASP 256 377 377 ASP ASP A . n A 1 257 TYR 257 378 378 TYR TYR A . n A 1 258 ILE 258 379 379 ILE ILE A . n A 1 259 TRP 259 380 380 TRP TRP A . n A 1 260 TYR 260 381 381 TYR TYR A . n A 1 261 SER 261 382 382 SER SER A . n A 1 262 LYS 262 383 383 LYS LYS A . n A 1 263 HIS 263 384 384 HIS HIS A . n A 1 264 ALA 264 385 385 ALA ALA A . n A 1 265 LEU 265 386 386 LEU LEU A . n A 1 266 ASN 266 387 387 ASN ASN A . n A 1 267 VAL 267 388 388 VAL VAL A . n A 1 268 ARG 268 389 389 ARG ARG A . n A 1 269 SER 269 390 390 SER SER A . n A 1 270 ALA 270 391 391 ALA ALA A . n A 1 271 LEU 271 392 392 LEU LEU A . n A 1 272 ASP 272 393 393 ASP ASP A . n A 1 273 LEU 273 394 394 LEU LEU A . n A 1 274 LEU 274 395 395 LEU LEU A . n A 1 275 THR 275 396 396 THR THR A . n A 1 276 GLU 276 397 397 GLU GLU A . n A 1 277 GLU 277 398 398 GLU GLU A . n A 1 278 GLN 278 399 399 GLN GLN A . n A 1 279 ILE 279 400 400 ILE ILE A . n A 1 280 GLY 280 401 401 GLY GLY A . n A 1 281 PRO 281 402 402 PRO PRO A . n A 1 282 ASN 282 403 403 ASN ASN A . n A 1 283 ARG 283 404 404 ARG ARG A . n A 1 284 LEU 284 405 405 LEU LEU A . n A 1 285 PRO 285 406 406 PRO PRO A . n A 1 286 SER 286 407 407 SER SER A . n A 1 287 PHE 287 408 408 PHE PHE A . n A 1 288 ASN 288 409 409 ASN ASN A . n A 1 289 TYR 289 410 410 TYR TYR A . n A 1 290 PRO 290 411 411 PRO PRO A . n A 1 291 SER 291 412 412 SER SER A . n A 1 292 ASP 292 413 413 ASP ASP A . n A 1 293 HIS 293 414 414 HIS HIS A . n A 1 294 LEU 294 415 415 LEU LEU A . n A 1 295 SER 295 416 416 SER SER A . n A 1 296 LEU 296 417 417 LEU LEU A . n A 1 297 VAL 297 418 418 VAL VAL A . n A 1 298 CYS 298 419 419 CYS CYS A . n A 1 299 ASP 299 420 420 ASP ASP A . n A 1 300 PHE 300 421 421 PHE PHE A . n A 1 301 SER 301 422 422 SER SER A . n A 1 302 PHE 302 423 423 PHE PHE A . n A 1 303 THR 303 424 424 THR THR A . n A 1 304 GLU 304 425 425 GLU GLU A . n A 1 305 GLU 305 426 426 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 501 1 MG MG A . C 3 HOH 1 601 38 HOH HOH A . C 3 HOH 2 602 32 HOH HOH A . C 3 HOH 3 603 29 HOH HOH A . C 3 HOH 4 604 10 HOH HOH A . C 3 HOH 5 605 18 HOH HOH A . C 3 HOH 6 606 16 HOH HOH A . C 3 HOH 7 607 13 HOH HOH A . C 3 HOH 8 608 12 HOH HOH A . C 3 HOH 9 609 6 HOH HOH A . C 3 HOH 10 610 1 HOH HOH A . C 3 HOH 11 611 14 HOH HOH A . C 3 HOH 12 612 24 HOH HOH A . C 3 HOH 13 613 9 HOH HOH A . C 3 HOH 14 614 33 HOH HOH A . C 3 HOH 15 615 17 HOH HOH A . C 3 HOH 16 616 36 HOH HOH A . C 3 HOH 17 617 27 HOH HOH A . C 3 HOH 18 618 31 HOH HOH A . C 3 HOH 19 619 35 HOH HOH A . C 3 HOH 20 620 15 HOH HOH A . C 3 HOH 21 621 25 HOH HOH A . C 3 HOH 22 622 19 HOH HOH A . C 3 HOH 23 623 2 HOH HOH A . C 3 HOH 24 624 20 HOH HOH A . C 3 HOH 25 625 7 HOH HOH A . C 3 HOH 26 626 8 HOH HOH A . C 3 HOH 27 627 28 HOH HOH A . C 3 HOH 28 628 39 HOH HOH A . C 3 HOH 29 629 23 HOH HOH A . C 3 HOH 30 630 4 HOH HOH A . C 3 HOH 31 631 40 HOH HOH A . C 3 HOH 32 632 37 HOH HOH A . C 3 HOH 33 633 21 HOH HOH A . C 3 HOH 34 634 34 HOH HOH A . C 3 HOH 35 635 3 HOH HOH A . C 3 HOH 36 636 22 HOH HOH A . C 3 HOH 37 637 30 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-06-06 2 'Structure model' 1 1 2018-09-05 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_database_PDB_obs_spr 2 2 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_status.status_code' 2 2 'Structure model' '_pdbx_database_status.status_code_sf' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -23.6183 _pdbx_refine_tls.origin_y -1.0461 _pdbx_refine_tls.origin_z -9.8051 _pdbx_refine_tls.T[1][1] 0.2931 _pdbx_refine_tls.T[2][2] 0.2989 _pdbx_refine_tls.T[3][3] 0.2187 _pdbx_refine_tls.T[1][2] 0.0116 _pdbx_refine_tls.T[1][3] -0.0161 _pdbx_refine_tls.T[2][3] -0.0363 _pdbx_refine_tls.L[1][1] 1.7654 _pdbx_refine_tls.L[2][2] 1.8526 _pdbx_refine_tls.L[3][3] 1.2206 _pdbx_refine_tls.L[1][2] 0.2565 _pdbx_refine_tls.L[1][3] 0.1305 _pdbx_refine_tls.L[2][3] 0.5526 _pdbx_refine_tls.S[1][1] 0.0043 _pdbx_refine_tls.S[1][2] 0.0212 _pdbx_refine_tls.S[1][3] 0.0442 _pdbx_refine_tls.S[2][1] -0.0593 _pdbx_refine_tls.S[2][2] 0.0033 _pdbx_refine_tls.S[2][3] 0.0112 _pdbx_refine_tls.S[3][1] -0.0266 _pdbx_refine_tls.S[3][2] -0.0780 _pdbx_refine_tls.S[3][3] -0.0027 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8_1069 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A PRO 122 ? ? N A PRO 123 ? ? CA A PRO 123 ? ? 133.41 119.30 14.11 1.50 Y 2 1 C A PRO 122 ? ? N A PRO 123 ? ? CD A PRO 123 ? ? 112.99 128.40 -15.41 2.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 123 ? ? 15.68 178.68 2 1 LEU A 132 ? ? -121.97 -151.93 3 1 ASP A 135 ? ? 62.58 -2.54 4 1 SER A 138 ? ? 57.11 88.96 5 1 LEU A 151 ? ? 64.73 118.84 6 1 PHE A 162 ? ? -61.30 94.18 7 1 THR A 202 ? ? -129.89 -58.15 8 1 HIS A 229 ? ? -99.81 54.38 9 1 ALA A 251 ? ? -167.19 92.73 10 1 THR A 259 ? ? 71.94 -19.01 11 1 ALA A 289 ? ? -73.55 -73.48 12 1 GLU A 398 ? ? -78.02 48.78 13 1 GLN A 399 ? ? -159.59 -39.38 14 1 ARG A 404 ? ? 58.94 -160.78 15 1 SER A 407 ? ? -163.82 -165.95 16 1 GLU A 425 ? ? 62.31 123.73 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 124 ? CG ? A ARG 3 CG 2 1 Y 1 A ARG 124 ? CD ? A ARG 3 CD 3 1 Y 1 A ARG 124 ? NE ? A ARG 3 NE 4 1 Y 1 A ARG 124 ? CZ ? A ARG 3 CZ 5 1 Y 1 A ARG 124 ? NH1 ? A ARG 3 NH1 6 1 Y 1 A ARG 124 ? NH2 ? A ARG 3 NH2 7 1 Y 1 A GLN 126 ? CG ? A GLN 5 CG 8 1 Y 1 A GLN 126 ? CD ? A GLN 5 CD 9 1 Y 1 A GLN 126 ? OE1 ? A GLN 5 OE1 10 1 Y 1 A GLN 126 ? NE2 ? A GLN 5 NE2 11 1 Y 1 A ARG 209 ? CG ? A ARG 88 CG 12 1 Y 1 A ARG 209 ? CD ? A ARG 88 CD 13 1 Y 1 A ARG 209 ? NE ? A ARG 88 NE 14 1 Y 1 A ARG 209 ? CZ ? A ARG 88 CZ 15 1 Y 1 A ARG 209 ? NH1 ? A ARG 88 NH1 16 1 Y 1 A ARG 209 ? NH2 ? A ARG 88 NH2 17 1 Y 1 A ARG 389 ? CG ? A ARG 268 CG 18 1 Y 1 A ARG 389 ? CD ? A ARG 268 CD 19 1 Y 1 A ARG 389 ? NE ? A ARG 268 NE 20 1 Y 1 A ARG 389 ? CZ ? A ARG 268 CZ 21 1 Y 1 A ARG 389 ? NH1 ? A ARG 268 NH1 22 1 Y 1 A ARG 389 ? NH2 ? A ARG 268 NH2 23 1 Y 1 A GLU 398 ? CG ? A GLU 277 CG 24 1 Y 1 A GLU 398 ? CD ? A GLU 277 CD 25 1 Y 1 A GLU 398 ? OE1 ? A GLU 277 OE1 26 1 Y 1 A GLU 398 ? OE2 ? A GLU 277 OE2 # loop_ _pdbx_audit_support.country _pdbx_audit_support.funding_organization _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'United States' 'National Institutes of Health/National Institute of General Medical Sciences' 1R01GM110161-01 1 'United States' 'Other private' 1013579 2 'United States' 'Other private' ? 3 'United States' 'Other private' ? 4 'United States' 'Other private' AWD1004002 5 'United States' 'Other private' ? 6 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #