HEADER CELL ADHESION 01-JUN-18 6DLF TITLE CRYSTAL STRUCTURE OF NTRI HOMODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROTRIMIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HNT,IGLON FAMILY MEMBER 2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NTM, IGLON2, NT, UNQ297/PRO337; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS IG, COMPLEX, HOMODIMER, CELL SURFACE, NEURONAL, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR F.M.RANAIVOSON,L.S.TURK,E.OZKAN,G.T.MONTELIONE,D.COMOLETTI REVDAT 4 11-OCT-23 6DLF 1 HETSYN REVDAT 3 29-JUL-20 6DLF 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 27-NOV-19 6DLF 1 REMARK REVDAT 1 10-APR-19 6DLF 0 JRNL AUTH F.M.RANAIVOSON,L.S.TURK,E.OZKAN,G.T.MONTELIONE,D.COMOLETTI JRNL TITL STRUCTURE OF A HETERODIMER OF NEURONAL CELL SURFACE PROTEINS JRNL REF STRUCTURE 2019 JRNL REFN ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. 3.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6685 - 5.8889 1.00 2870 136 0.2846 0.3237 REMARK 3 2 5.8889 - 4.6755 1.00 2739 152 0.2598 0.2572 REMARK 3 3 4.6755 - 4.0848 1.00 2717 125 0.2397 0.2861 REMARK 3 4 4.0848 - 3.7115 1.00 2691 147 0.2842 0.3328 REMARK 3 5 3.7115 - 3.4456 0.99 2649 127 0.3157 0.3746 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3536 REMARK 3 ANGLE : 0.758 4869 REMARK 3 CHIRALITY : 0.051 610 REMARK 3 PLANARITY : 0.004 628 REMARK 3 DIHEDRAL : 12.693 2120 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5836 32.3140 -63.0102 REMARK 3 T TENSOR REMARK 3 T11: 1.0285 T22: 1.0241 REMARK 3 T33: 0.7944 T12: -0.1456 REMARK 3 T13: -0.1274 T23: 0.1362 REMARK 3 L TENSOR REMARK 3 L11: 7.4880 L22: 8.2316 REMARK 3 L33: 2.8190 L12: 0.1974 REMARK 3 L13: -0.2096 L23: 2.3010 REMARK 3 S TENSOR REMARK 3 S11: 0.1564 S12: 0.3850 S13: 0.8637 REMARK 3 S21: -0.3896 S22: -0.0246 S23: 0.9948 REMARK 3 S31: -1.1852 S32: 0.1671 S33: 0.1083 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2448 1.8821 -34.2270 REMARK 3 T TENSOR REMARK 3 T11: 1.0009 T22: 1.3743 REMARK 3 T33: 1.1180 T12: 0.2644 REMARK 3 T13: 0.3702 T23: 0.3340 REMARK 3 L TENSOR REMARK 3 L11: 3.4748 L22: 4.1658 REMARK 3 L33: 9.2528 L12: -1.4057 REMARK 3 L13: -3.5428 L23: -1.7675 REMARK 3 S TENSOR REMARK 3 S11: -1.1242 S12: -0.5032 S13: -1.1127 REMARK 3 S21: 1.3089 S22: 0.7953 S23: 0.0728 REMARK 3 S31: 0.3024 S32: 0.1610 S33: 0.3527 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 211 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2917 -25.1419 -24.8133 REMARK 3 T TENSOR REMARK 3 T11: 2.0220 T22: 1.7337 REMARK 3 T33: 1.7780 T12: -0.0434 REMARK 3 T13: 0.8040 T23: -0.1011 REMARK 3 L TENSOR REMARK 3 L11: 1.9128 L22: 5.7547 REMARK 3 L33: 1.7968 L12: 1.3555 REMARK 3 L13: 1.1386 L23: -1.6384 REMARK 3 S TENSOR REMARK 3 S11: 0.3689 S12: -0.5395 S13: -0.3685 REMARK 3 S21: 0.1629 S22: -1.3710 S23: 0.2737 REMARK 3 S31: 1.5573 S32: -0.0707 S33: 0.7413 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7825 49.4435 -53.1271 REMARK 3 T TENSOR REMARK 3 T11: 1.2717 T22: 1.8886 REMARK 3 T33: 1.3642 T12: -0.7922 REMARK 3 T13: 0.5253 T23: -0.5192 REMARK 3 L TENSOR REMARK 3 L11: 1.8972 L22: 8.3347 REMARK 3 L33: 4.0228 L12: 1.9125 REMARK 3 L13: 2.6621 L23: 1.3206 REMARK 3 S TENSOR REMARK 3 S11: 0.7774 S12: 0.7583 S13: -1.0837 REMARK 3 S21: 0.1512 S22: -0.8500 S23: -2.8565 REMARK 3 S31: -1.9588 S32: 1.5643 S33: -0.2360 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5279 43.5920 -62.3456 REMARK 3 T TENSOR REMARK 3 T11: 2.0048 T22: 2.0613 REMARK 3 T33: 1.6627 T12: -0.9246 REMARK 3 T13: 0.7363 T23: -0.7118 REMARK 3 L TENSOR REMARK 3 L11: 3.2664 L22: 4.1656 REMARK 3 L33: 7.3536 L12: 1.8408 REMARK 3 L13: 0.1127 L23: 2.3280 REMARK 3 S TENSOR REMARK 3 S11: -0.1154 S12: 0.3930 S13: 0.1531 REMARK 3 S21: -1.6995 S22: 1.6328 S23: -0.8007 REMARK 3 S31: -1.6465 S32: 1.3468 S33: 0.8213 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5953 69.0310 -24.7042 REMARK 3 T TENSOR REMARK 3 T11: 1.1024 T22: 0.9879 REMARK 3 T33: 0.9702 T12: -0.4611 REMARK 3 T13: 0.1473 T23: -0.1161 REMARK 3 L TENSOR REMARK 3 L11: 0.5642 L22: 7.0560 REMARK 3 L33: 5.9184 L12: 1.5390 REMARK 3 L13: 2.1626 L23: 5.1071 REMARK 3 S TENSOR REMARK 3 S11: -0.2624 S12: 0.5009 S13: -0.3653 REMARK 3 S21: -0.3138 S22: 0.9868 S23: -1.3334 REMARK 3 S31: 0.3661 S32: 0.3852 S33: 0.2877 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 241 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8951 98.2472 -3.1381 REMARK 3 T TENSOR REMARK 3 T11: 2.8396 T22: 1.1309 REMARK 3 T33: 0.9232 T12: -0.2129 REMARK 3 T13: -0.2815 T23: -0.6028 REMARK 3 L TENSOR REMARK 3 L11: 1.3394 L22: 0.0249 REMARK 3 L33: 0.9167 L12: 0.2183 REMARK 3 L13: -1.1498 L23: -0.1398 REMARK 3 S TENSOR REMARK 3 S11: 1.0032 S12: -0.6191 S13: 1.2291 REMARK 3 S21: 2.6956 S22: -0.7407 S23: 0.4014 REMARK 3 S31: -0.6635 S32: 0.6887 S33: -0.5087 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14368 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.446 REMARK 200 RESOLUTION RANGE LOW (A) : 47.664 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.65 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.95100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6DLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA,K-TARTRATE, TRIS-HCL PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.25850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.01250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.99800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.01250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.25850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.99800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 23 REMARK 465 TYR A 24 REMARK 465 LYS A 25 REMARK 465 ASP A 26 REMARK 465 ASP A 27 REMARK 465 ASP A 28 REMARK 465 ASP A 29 REMARK 465 LYS A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 ALA A 33 REMARK 465 GLY A 34 REMARK 465 ASP A 35 REMARK 465 ALA A 36 REMARK 465 THR A 37 REMARK 465 PHE A 38 REMARK 465 PRO A 39 REMARK 465 LYS A 40 REMARK 465 GLU A 227 REMARK 465 ALA A 228 REMARK 465 LYS A 229 REMARK 465 GLY A 230 REMARK 465 THR A 231 REMARK 465 GLY A 232 REMARK 465 VAL A 233 REMARK 465 PRO A 234 REMARK 465 VAL A 235 REMARK 465 GLY A 236 REMARK 465 GLN A 237 REMARK 465 LYS A 238 REMARK 465 GLY A 239 REMARK 465 ASP A 258 REMARK 465 ASP A 259 REMARK 465 LYS A 260 REMARK 465 ARG A 261 REMARK 465 LEU A 262 REMARK 465 ILE A 263 REMARK 465 GLU A 264 REMARK 465 GLY A 265 REMARK 465 LYS A 266 REMARK 465 LYS A 267 REMARK 465 GLY A 268 REMARK 465 VAL A 269 REMARK 465 PHE A 282 REMARK 465 PHE A 283 REMARK 465 ASN A 284 REMARK 465 VAL A 285 REMARK 465 SER A 286 REMARK 465 GLU A 287 REMARK 465 HIS A 288 REMARK 465 ASP A 289 REMARK 465 TYR A 290 REMARK 465 PHE A 311 REMARK 465 GLY A 312 REMARK 465 PRO A 313 REMARK 465 GLY A 314 REMARK 465 ALA A 315 REMARK 465 VAL A 316 REMARK 465 SER A 317 REMARK 465 GLU A 318 REMARK 465 VAL A 319 REMARK 465 SER A 320 REMARK 465 ASN A 321 REMARK 465 GLY A 322 REMARK 465 LEU A 323 REMARK 465 GLU A 324 REMARK 465 VAL A 325 REMARK 465 LEU A 326 REMARK 465 PHE A 327 REMARK 465 GLN A 328 REMARK 465 ASP B 23 REMARK 465 TYR B 24 REMARK 465 LYS B 25 REMARK 465 ASP B 26 REMARK 465 ASP B 27 REMARK 465 ASP B 28 REMARK 465 ASP B 29 REMARK 465 LYS B 30 REMARK 465 ALA B 31 REMARK 465 ALA B 32 REMARK 465 ALA B 33 REMARK 465 GLY B 34 REMARK 465 ASP B 35 REMARK 465 ALA B 36 REMARK 465 THR B 37 REMARK 465 PHE B 38 REMARK 465 PRO B 39 REMARK 465 LYS B 40 REMARK 465 ALA B 41 REMARK 465 GLU B 227 REMARK 465 ALA B 228 REMARK 465 LYS B 229 REMARK 465 GLY B 230 REMARK 465 THR B 231 REMARK 465 GLY B 232 REMARK 465 VAL B 233 REMARK 465 PRO B 234 REMARK 465 VAL B 235 REMARK 465 GLY B 236 REMARK 465 GLN B 237 REMARK 465 LYS B 238 REMARK 465 GLY B 239 REMARK 465 ASP B 258 REMARK 465 ASP B 259 REMARK 465 LYS B 260 REMARK 465 ARG B 261 REMARK 465 LEU B 262 REMARK 465 ILE B 263 REMARK 465 GLU B 264 REMARK 465 GLY B 265 REMARK 465 LYS B 266 REMARK 465 LYS B 267 REMARK 465 GLY B 268 REMARK 465 VAL B 269 REMARK 465 PHE B 282 REMARK 465 PHE B 283 REMARK 465 ASN B 284 REMARK 465 VAL B 285 REMARK 465 SER B 286 REMARK 465 GLU B 287 REMARK 465 HIS B 288 REMARK 465 ASP B 289 REMARK 465 TYR B 290 REMARK 465 GLY B 291 REMARK 465 PHE B 311 REMARK 465 GLY B 312 REMARK 465 PRO B 313 REMARK 465 GLY B 314 REMARK 465 ALA B 315 REMARK 465 VAL B 316 REMARK 465 SER B 317 REMARK 465 GLU B 318 REMARK 465 VAL B 319 REMARK 465 SER B 320 REMARK 465 ASN B 321 REMARK 465 GLY B 322 REMARK 465 LEU B 323 REMARK 465 GLU B 324 REMARK 465 VAL B 325 REMARK 465 LEU B 326 REMARK 465 PHE B 327 REMARK 465 GLN B 328 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 62 CD NE CZ NH1 NH2 REMARK 470 ASP A 120 CG OD1 OD2 REMARK 470 ASN A 121 CG OD1 ND2 REMARK 470 HIS A 122 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 127 CD NE CZ NH1 NH2 REMARK 470 LYS A 137 CE NZ REMARK 470 ILE A 172 CG1 CG2 CD1 REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 VAL A 177 CG1 CG2 REMARK 470 PHE A 179 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 GLU A 184 CD OE1 OE2 REMARK 470 ARG A 193 NE CZ NH1 NH2 REMARK 470 ARG A 214 NE CZ NH1 NH2 REMARK 470 TYR A 224 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 225 CG1 CG2 CD1 REMARK 470 SER A 226 OG REMARK 470 THR A 240 OG1 CG2 REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 GLN A 254 CG CD OE1 NE2 REMARK 470 TYR A 256 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 ARG A 274 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 276 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 277 CG CD1 CD2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 ASN A 292 CG OD1 ND2 REMARK 470 TYR A 293 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 294 OG1 CG2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 ILE A 308 CG1 CG2 CD1 REMARK 470 MET A 309 CG SD CE REMARK 470 LEU A 310 CG CD1 CD2 REMARK 470 MET B 42 CG SD CE REMARK 470 ARG B 62 CD NE CZ NH1 NH2 REMARK 470 LYS B 81 CE NZ REMARK 470 LEU B 91 CG CD1 CD2 REMARK 470 GLN B 95 CG CD OE1 NE2 REMARK 470 ILE B 102 CG1 CG2 CD1 REMARK 470 GLU B 110 CD OE1 OE2 REMARK 470 GLN B 118 CG CD OE1 NE2 REMARK 470 ASP B 120 CG OD1 OD2 REMARK 470 ASN B 121 CG OD1 ND2 REMARK 470 HIS B 122 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 ARG B 127 CD NE CZ NH1 NH2 REMARK 470 LYS B 137 CE NZ REMARK 470 ARG B 162 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 172 CG1 CG2 CD1 REMARK 470 LYS B 175 CG CD CE NZ REMARK 470 VAL B 177 CG1 CG2 REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 ILE B 225 CG1 CG2 CD1 REMARK 470 THR B 240 OG1 CG2 REMARK 470 LEU B 241 CG CD1 CD2 REMARK 470 GLN B 242 CG CD OE1 NE2 REMARK 470 GLU B 244 CD OE1 OE2 REMARK 470 GLU B 252 CG CD OE1 OE2 REMARK 470 GLN B 254 CG CD OE1 NE2 REMARK 470 LYS B 257 CG CD CE NZ REMARK 470 LYS B 270 CG CD CE NZ REMARK 470 GLU B 272 CD OE1 OE2 REMARK 470 ARG B 274 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 276 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 277 CG CD1 CD2 REMARK 470 LYS B 279 CG CD CE NZ REMARK 470 ILE B 281 CG1 CG2 CD1 REMARK 470 TYR B 293 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR B 294 OG1 CG2 REMARK 470 SER B 298 OG REMARK 470 LYS B 300 CG CD CE NZ REMARK 470 LEU B 301 CD1 CD2 REMARK 470 HIS B 303 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 308 CG1 CG2 CD1 REMARK 470 MET B 309 CG SD CE REMARK 470 LEU B 310 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 61 -125.72 55.11 REMARK 500 ARG A 71 -122.45 56.77 REMARK 500 ASN B 61 -124.47 53.75 REMARK 500 ARG B 71 -122.11 56.17 REMARK 500 ASP B 206 -1.23 69.41 REMARK 500 REMARK 500 REMARK: NULL DBREF 6DLF A 34 322 UNP Q9P121 NTRI_HUMAN 34 322 DBREF 6DLF B 34 322 UNP Q9P121 NTRI_HUMAN 34 322 SEQADV 6DLF ASP A 23 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF TYR A 24 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF LYS A 25 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ASP A 26 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ASP A 27 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ASP A 28 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ASP A 29 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF LYS A 30 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ALA A 31 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ALA A 32 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ALA A 33 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF LEU A 323 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF GLU A 324 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF VAL A 325 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF LEU A 326 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF PHE A 327 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF GLN A 328 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ASP B 23 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF TYR B 24 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF LYS B 25 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ASP B 26 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ASP B 27 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ASP B 28 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ASP B 29 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF LYS B 30 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ALA B 31 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ALA B 32 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF ALA B 33 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF LEU B 323 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF GLU B 324 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF VAL B 325 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF LEU B 326 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF PHE B 327 UNP Q9P121 EXPRESSION TAG SEQADV 6DLF GLN B 328 UNP Q9P121 EXPRESSION TAG SEQRES 1 A 306 ASP TYR LYS ASP ASP ASP ASP LYS ALA ALA ALA GLY ASP SEQRES 2 A 306 ALA THR PHE PRO LYS ALA MET ASP ASN VAL THR VAL ARG SEQRES 3 A 306 GLN GLY GLU SER ALA THR LEU ARG CYS THR ILE ASP ASN SEQRES 4 A 306 ARG VAL THR ARG VAL ALA TRP LEU ASN ARG SER THR ILE SEQRES 5 A 306 LEU TYR ALA GLY ASN ASP LYS TRP CYS LEU ASP PRO ARG SEQRES 6 A 306 VAL VAL LEU LEU SER ASN THR GLN THR GLN TYR SER ILE SEQRES 7 A 306 GLU ILE GLN ASN VAL ASP VAL TYR ASP GLU GLY PRO TYR SEQRES 8 A 306 THR CYS SER VAL GLN THR ASP ASN HIS PRO LYS THR SER SEQRES 9 A 306 ARG VAL HIS LEU ILE VAL GLN VAL SER PRO LYS ILE VAL SEQRES 10 A 306 GLU ILE SER SER ASP ILE SER ILE ASN GLU GLY ASN ASN SEQRES 11 A 306 ILE SER LEU THR CYS ILE ALA THR GLY ARG PRO GLU PRO SEQRES 12 A 306 THR VAL THR TRP ARG HIS ILE SER PRO LYS ALA VAL GLY SEQRES 13 A 306 PHE VAL SER GLU ASP GLU TYR LEU GLU ILE GLN GLY ILE SEQRES 14 A 306 THR ARG GLU GLN SER GLY ASP TYR GLU CYS SER ALA SER SEQRES 15 A 306 ASN ASP VAL ALA ALA PRO VAL VAL ARG ARG VAL LYS VAL SEQRES 16 A 306 THR VAL ASN TYR PRO PRO TYR ILE SER GLU ALA LYS GLY SEQRES 17 A 306 THR GLY VAL PRO VAL GLY GLN LYS GLY THR LEU GLN CYS SEQRES 18 A 306 GLU ALA SER ALA VAL PRO SER ALA GLU PHE GLN TRP TYR SEQRES 19 A 306 LYS ASP ASP LYS ARG LEU ILE GLU GLY LYS LYS GLY VAL SEQRES 20 A 306 LYS VAL GLU ASN ARG PRO PHE LEU SER LYS LEU ILE PHE SEQRES 21 A 306 PHE ASN VAL SER GLU HIS ASP TYR GLY ASN TYR THR CYS SEQRES 22 A 306 VAL ALA SER ASN LYS LEU GLY HIS THR ASN ALA SER ILE SEQRES 23 A 306 MET LEU PHE GLY PRO GLY ALA VAL SER GLU VAL SER ASN SEQRES 24 A 306 GLY LEU GLU VAL LEU PHE GLN SEQRES 1 B 306 ASP TYR LYS ASP ASP ASP ASP LYS ALA ALA ALA GLY ASP SEQRES 2 B 306 ALA THR PHE PRO LYS ALA MET ASP ASN VAL THR VAL ARG SEQRES 3 B 306 GLN GLY GLU SER ALA THR LEU ARG CYS THR ILE ASP ASN SEQRES 4 B 306 ARG VAL THR ARG VAL ALA TRP LEU ASN ARG SER THR ILE SEQRES 5 B 306 LEU TYR ALA GLY ASN ASP LYS TRP CYS LEU ASP PRO ARG SEQRES 6 B 306 VAL VAL LEU LEU SER ASN THR GLN THR GLN TYR SER ILE SEQRES 7 B 306 GLU ILE GLN ASN VAL ASP VAL TYR ASP GLU GLY PRO TYR SEQRES 8 B 306 THR CYS SER VAL GLN THR ASP ASN HIS PRO LYS THR SER SEQRES 9 B 306 ARG VAL HIS LEU ILE VAL GLN VAL SER PRO LYS ILE VAL SEQRES 10 B 306 GLU ILE SER SER ASP ILE SER ILE ASN GLU GLY ASN ASN SEQRES 11 B 306 ILE SER LEU THR CYS ILE ALA THR GLY ARG PRO GLU PRO SEQRES 12 B 306 THR VAL THR TRP ARG HIS ILE SER PRO LYS ALA VAL GLY SEQRES 13 B 306 PHE VAL SER GLU ASP GLU TYR LEU GLU ILE GLN GLY ILE SEQRES 14 B 306 THR ARG GLU GLN SER GLY ASP TYR GLU CYS SER ALA SER SEQRES 15 B 306 ASN ASP VAL ALA ALA PRO VAL VAL ARG ARG VAL LYS VAL SEQRES 16 B 306 THR VAL ASN TYR PRO PRO TYR ILE SER GLU ALA LYS GLY SEQRES 17 B 306 THR GLY VAL PRO VAL GLY GLN LYS GLY THR LEU GLN CYS SEQRES 18 B 306 GLU ALA SER ALA VAL PRO SER ALA GLU PHE GLN TRP TYR SEQRES 19 B 306 LYS ASP ASP LYS ARG LEU ILE GLU GLY LYS LYS GLY VAL SEQRES 20 B 306 LYS VAL GLU ASN ARG PRO PHE LEU SER LYS LEU ILE PHE SEQRES 21 B 306 PHE ASN VAL SER GLU HIS ASP TYR GLY ASN TYR THR CYS SEQRES 22 B 306 VAL ALA SER ASN LYS LEU GLY HIS THR ASN ALA SER ILE SEQRES 23 B 306 MET LEU PHE GLY PRO GLY ALA VAL SER GLU VAL SER ASN SEQRES 24 B 306 GLY LEU GLU VAL LEU PHE GLN HET NAG C 1 14 HET NAG C 2 14 HET NAG A 401 14 HET NAG A 402 14 HET NAG A 403 14 HET NAG B 403 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 6(C8 H15 N O6) HELIX 1 AA1 ASP A 106 GLU A 110 5 5 HELIX 2 AA2 THR A 192 SER A 196 5 5 HELIX 3 AA3 ASP B 106 GLU B 110 5 5 HELIX 4 AA4 THR B 192 SER B 196 5 5 SHEET 1 AA1 6 VAL A 45 ARG A 48 0 SHEET 2 AA1 6 THR A 125 ILE A 141 1 O HIS A 129 N VAL A 45 SHEET 3 AA1 6 GLY A 111 VAL A 117 -1 N TYR A 113 O VAL A 128 SHEET 4 AA1 6 VAL A 66 ASN A 70 -1 N LEU A 69 O THR A 114 SHEET 5 AA1 6 THR A 73 ALA A 77 -1 O LEU A 75 N TRP A 68 SHEET 6 AA1 6 ASP A 80 LYS A 81 -1 O ASP A 80 N ALA A 77 SHEET 1 AA2 3 VAL A 45 ARG A 48 0 SHEET 2 AA2 3 THR A 125 ILE A 141 1 O HIS A 129 N VAL A 45 SHEET 3 AA2 3 CYS A 157 ARG A 162 -1 O THR A 160 N LYS A 137 SHEET 1 AA3 3 ALA A 53 LEU A 55 0 SHEET 2 AA3 3 SER A 99 ILE A 102 -1 O ILE A 102 N ALA A 53 SHEET 3 AA3 3 VAL A 88 SER A 92 -1 N LEU A 91 O SER A 99 SHEET 1 AA4 5 ILE A 145 ASN A 148 0 SHEET 2 AA4 5 VAL A 211 ILE A 225 1 O ASN A 220 N ILE A 147 SHEET 3 AA4 5 GLY A 197 SER A 204 -1 N TYR A 199 O VAL A 215 SHEET 4 AA4 5 THR A 166 HIS A 171 -1 N THR A 166 O SER A 204 SHEET 5 AA4 5 VAL A 180 SER A 181 -1 O SER A 181 N TRP A 169 SHEET 1 AA5 5 ILE A 145 ASN A 148 0 SHEET 2 AA5 5 VAL A 211 ILE A 225 1 O ASN A 220 N ILE A 147 SHEET 3 AA5 5 LEU A 241 VAL A 248 -1 O SER A 246 N TYR A 224 SHEET 4 AA5 5 LEU A 277 LEU A 280 -1 O LEU A 280 N LEU A 241 SHEET 5 AA5 5 VAL A 271 ASN A 273 -1 N GLU A 272 O LYS A 279 SHEET 1 AA6 2 ILE A 153 LEU A 155 0 SHEET 2 AA6 2 LEU A 186 ILE A 188 -1 O LEU A 186 N LEU A 155 SHEET 1 AA7 3 GLU A 252 TYR A 256 0 SHEET 2 AA7 3 ASN A 292 SER A 298 -1 O VAL A 296 N GLN A 254 SHEET 3 AA7 3 HIS A 303 MET A 309 -1 O ALA A 306 N CYS A 295 SHEET 1 AA8 6 ASP B 43 ARG B 48 0 SHEET 2 AA8 6 THR B 125 ILE B 141 1 O ILE B 131 N VAL B 47 SHEET 3 AA8 6 GLY B 111 SER B 116 -1 N GLY B 111 O LEU B 130 SHEET 4 AA8 6 ALA B 67 ASN B 70 -1 N LEU B 69 O THR B 114 SHEET 5 AA8 6 THR B 73 ALA B 77 -1 O LEU B 75 N TRP B 68 SHEET 6 AA8 6 ASP B 80 LYS B 81 -1 O ASP B 80 N ALA B 77 SHEET 1 AA9 3 ASP B 43 ARG B 48 0 SHEET 2 AA9 3 THR B 125 ILE B 141 1 O ILE B 131 N VAL B 47 SHEET 3 AA9 3 CYS B 157 ARG B 162 -1 O THR B 160 N LYS B 137 SHEET 1 AB1 3 ALA B 53 THR B 58 0 SHEET 2 AB1 3 GLN B 97 ILE B 102 -1 O ILE B 100 N LEU B 55 SHEET 3 AB1 3 VAL B 88 SER B 92 -1 N LEU B 91 O SER B 99 SHEET 1 AB2 4 ILE B 145 ASN B 148 0 SHEET 2 AB2 4 VAL B 211 ILE B 225 1 O ASN B 220 N ILE B 147 SHEET 3 AB2 4 GLY B 197 SER B 204 -1 N CYS B 201 O ARG B 213 SHEET 4 AB2 4 THR B 166 HIS B 171 -1 N THR B 166 O SER B 204 SHEET 1 AB3 5 ILE B 145 ASN B 148 0 SHEET 2 AB3 5 VAL B 211 ILE B 225 1 O ASN B 220 N ILE B 147 SHEET 3 AB3 5 LEU B 241 VAL B 248 -1 O VAL B 248 N TYR B 221 SHEET 4 AB3 5 LEU B 277 LEU B 280 -1 O SER B 278 N CYS B 243 SHEET 5 AB3 5 VAL B 271 ASN B 273 -1 N GLU B 272 O LYS B 279 SHEET 1 AB4 2 ILE B 153 LEU B 155 0 SHEET 2 AB4 2 LEU B 186 ILE B 188 -1 O LEU B 186 N LEU B 155 SHEET 1 AB5 3 GLU B 252 TYR B 256 0 SHEET 2 AB5 3 TYR B 293 SER B 298 -1 O VAL B 296 N GLN B 254 SHEET 3 AB5 3 HIS B 303 ILE B 308 -1 O ALA B 306 N CYS B 295 SSBOND 1 CYS A 57 CYS A 115 1555 1555 2.03 SSBOND 2 CYS A 157 CYS A 201 1555 1555 2.03 SSBOND 3 CYS A 243 CYS A 295 1555 1555 2.03 SSBOND 4 CYS B 57 CYS B 115 1555 1555 2.03 SSBOND 5 CYS B 157 CYS B 201 1555 1555 2.03 SSBOND 6 CYS B 243 CYS B 295 1555 1555 2.04 LINK ND2 ASN A 44 C1 NAG A 403 1555 1555 1.44 LINK ND2 ASN A 70 C1 NAG A 401 1555 1555 1.45 LINK ND2 ASN A 152 C1 NAG A 402 1555 1555 1.44 LINK ND2 ASN B 70 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 152 C1 NAG B 403 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 CISPEP 1 ARG A 162 PRO A 163 0 -0.82 CISPEP 2 VAL A 248 PRO A 249 0 -1.91 CISPEP 3 ARG B 162 PRO B 163 0 0.02 CISPEP 4 VAL B 248 PRO B 249 0 -2.29 CRYST1 76.517 101.996 134.025 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013069 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007461 0.00000