HEADER MEMBRANE PROTEIN 01-JUN-18 6DLN TITLE OLIGOMERIC STRUCTURE OF THE HIV GP41 MPER-TMD IN PHOSPHOLIPID BILAYERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE PROTEIN GP41; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 665-703; COMPND 5 SYNONYM: ENVELOPE GLYCOPROTEIN GP160, ENV POLYPROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 4 SUBTYPE B; SOURCE 5 ORGANISM_COMMON: ISOLATE HXB2; SOURCE 6 ORGANISM_TAXID: 11706 KEYWDS HIV, MPER-TMD, MEMBRANE PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR B.KWON,M.LEE,A.J.WARING,M.HONG REVDAT 3 01-MAY-24 6DLN 1 REMARK REVDAT 2 18-DEC-19 6DLN 1 REMARK REVDAT 1 08-AUG-18 6DLN 0 JRNL AUTH B.KWON,M.LEE,A.J.WARING,M.HONG JRNL TITL OLIGOMERIC STRUCTURE AND THREE-DIMENSIONAL FOLD OF THE HIV JRNL TITL 2 GP41 MEMBRANE-PROXIMAL EXTERNAL REGION AND TRANSMEMBRANE JRNL TITL 3 DOMAIN IN PHOSPHOLIPID BILAYERS. JRNL REF J. AM. CHEM. SOC. V. 140 8246 2018 JRNL REFN ESSN 1520-5126 JRNL PMID 29888593 JRNL DOI 10.1021/JACS.8B04010 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GROMACS, CHARMM-GUI REMARK 3 AUTHORS : UNIVERSITY OF GRONINGENROYAL INSTITUTE OF REMARK 3 TECHNOLOGYUPPSALA UNIVERSITY (GROMACS), LEHIGH REMARK 3 UNIVERSITY / DEPARTMENT OF BIOLOGICAL SCIENCES / REMARK 3 DEPARTMENT OF BIOENGINEERING/ IM LAB (CHARMM-GUI) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DLN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234854. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 263; 233 REMARK 210 PH : 7.5; 7.5 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 33 % W/W 4-19F-F699 HIV GP41 REMARK 210 MPER-TMD, RECONSTITUTED INTO THE REMARK 210 VIRUS MIMETIC MEMBRANE (POPC: REMARK 210 POPE:POPS:SPHINGOMYELIN: REMARK 210 CHOLESTEROL = 30:15:15:10:30), REMARK 210 10 MM HEPES BUFFER PH 7.5; 33 % REMARK 210 W/W [U-13C; U-15N]-L669,I686, REMARK 210 A700, 13C'-G694, 19F-5F-W680 HIV REMARK 210 GP41 MPER-TMD, RECONSTITUTED REMARK 210 INTO THE VIRUS MIMETIC MEMBRANE REMARK 210 (POPC:POPE:POPS:SPHINGOMYELIN: REMARK 210 CHOLESTEROL = 30:15:15:10:30), REMARK 210 10 MM HEPES BUFFER PH 7.5; 33 % REMARK 210 W/W [U-13C; U-15N]-L684,I686, REMARK 210 G694, 19F-5F-W678, 19F-4F-F699 REMARK 210 HIV GP41 MPER-TMD, RECONSTITUTED REMARK 210 INTO THE VIRUS MIMETIC MEMBRANE REMARK 210 (POPC:POPE:POPS:SPHINGOMYELIN: REMARK 210 CHOLESTEROL = 30:15:15:10:30), REMARK 210 10 MM HEPES BUFFER PH 7.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 13C-13C DARR; 2D WATER EDITED REMARK 210 DARR; 13C-19F REDOR; 19F CODEX REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : BRUKER REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, MATLAB, GROMACS, CHARMM REMARK 210 -GUI REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 59 H ILE B 63 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 TRP A 16 NE1 TRP A 16 CE2 -0.112 REMARK 500 2 SER A 39 CA SER A 39 CB 0.127 REMARK 500 3 TRP A 6 CA TRP A 6 CB 0.135 REMARK 500 3 PHE A 35 CE1 PHE A 35 CZ 0.124 REMARK 500 3 TRP B 47 NE1 TRP B 47 CE2 0.088 REMARK 500 3 TYR B 56 CZ TYR B 56 CE2 0.088 REMARK 500 4 SER A 39 CA SER A 39 CB 0.112 REMARK 500 4 TRP B 53 NE1 TRP B 53 CE2 -0.081 REMARK 500 5 SER A 39 CA SER A 39 CB 0.125 REMARK 500 5 SER B 78 CA SER B 78 CB 0.095 REMARK 500 5 TRP C 80 CG TRP C 80 CD1 0.087 REMARK 500 6 PHE A 21 CG PHE A 21 CD2 0.093 REMARK 500 6 TRP B 47 CE2 TRP B 47 CD2 0.089 REMARK 500 8 TRP A 6 CG TRP A 6 CD1 0.085 REMARK 500 8 TYR A 17 CZ TYR A 17 CE2 0.085 REMARK 500 8 VAL B 68 CB VAL B 68 CG1 0.131 REMARK 500 10 LEU C 116 CA LEU C 116 CB 0.147 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TRP A 2 CE3 - CZ3 - CH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 1 TRP A 14 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 1 TYR A 17 CG - CD1 - CE1 ANGL. DEV. = 5.1 DEGREES REMARK 500 1 PHE A 21 CB - CG - CD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 1 ARG A 32 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 1 TYR B 56 CB - CG - CD2 ANGL. DEV. = -9.3 DEGREES REMARK 500 1 TYR B 56 CB - CG - CD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 1 TYR B 56 CD1 - CE1 - CZ ANGL. DEV. = -5.8 DEGREES REMARK 500 1 ARG B 71 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 1 ARG B 71 NE - CZ - NH2 ANGL. DEV. = 7.9 DEGREES REMARK 500 1 VAL B 73 CA - CB - CG1 ANGL. DEV. = 9.2 DEGREES REMARK 500 1 TRP C 84 CB - CG - CD2 ANGL. DEV. = 9.3 DEGREES REMARK 500 1 TRP C 84 CB - CG - CD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 2 ARG A 32 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 2 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 2 PHE B 48 CB - CG - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 2 TYR B 56 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 2 TYR B 56 CG - CD2 - CE2 ANGL. DEV. = -5.4 DEGREES REMARK 500 2 TRP C 84 CG - CD1 - NE1 ANGL. DEV. = 6.3 DEGREES REMARK 500 2 TRP C 86 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 2 PHE C 87 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 2 THR C 90 CA - CB - CG2 ANGL. DEV. = -9.8 DEGREES REMARK 500 2 TYR C 95 CB - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 2 PHE C 99 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 2 PHE C 99 CD1 - CE1 - CZ ANGL. DEV. = -8.7 DEGREES REMARK 500 2 ARG C 110 NE - CZ - NH1 ANGL. DEV. = 9.4 DEGREES REMARK 500 2 ARG C 110 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 2 PHE C 113 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 2 SER C 117 N - CA - CB ANGL. DEV. = 9.3 DEGREES REMARK 500 3 TRP A 16 CB - CG - CD2 ANGL. DEV. = 9.6 DEGREES REMARK 500 3 LEU B 77 O - C - N ANGL. DEV. = -11.2 DEGREES REMARK 500 3 TRP C 94 CH2 - CZ2 - CE2 ANGL. DEV. = -6.1 DEGREES REMARK 500 4 TRP A 16 CB - CG - CD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 4 TYR A 17 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 4 TYR A 17 CG - CD2 - CE2 ANGL. DEV. = -5.0 DEGREES REMARK 500 4 PHE A 21 CB - CG - CD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 4 ARG A 32 NE - CZ - NH1 ANGL. DEV. = 8.3 DEGREES REMARK 500 4 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 4 PHE A 35 CB - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 4 PHE A 35 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 4 LEU B 44 CB - CG - CD2 ANGL. DEV. = -11.0 DEGREES REMARK 500 4 TRP B 53 CD1 - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 4 TYR B 56 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 4 TYR B 56 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 4 ARG B 71 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 4 ARG B 71 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 4 SER C 82 N - CA - CB ANGL. DEV. = 9.9 DEGREES REMARK 500 4 PHE C 99 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 4 MET C 101 CG - SD - CE ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 140 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 2 24.10 -157.50 REMARK 500 1 TRP A 14 83.01 143.24 REMARK 500 1 TYR A 17 125.92 3.58 REMARK 500 1 ILE A 18 -99.52 76.41 REMARK 500 1 LYS A 19 -155.26 54.60 REMARK 500 1 TRP B 53 109.29 165.28 REMARK 500 1 TYR B 56 89.30 72.17 REMARK 500 1 ILE B 57 -83.75 77.17 REMARK 500 1 LYS B 58 -154.61 47.96 REMARK 500 1 ASN C 91 -89.45 -81.53 REMARK 500 1 TRP C 92 63.16 -150.85 REMARK 500 1 ILE C 96 -85.81 76.46 REMARK 500 1 LYS C 97 -166.53 53.20 REMARK 500 2 TRP A 2 41.69 -168.71 REMARK 500 2 TRP A 14 108.85 150.40 REMARK 500 2 TYR A 17 149.31 -39.34 REMARK 500 2 ILE A 18 -93.79 77.39 REMARK 500 2 LYS A 19 -164.77 34.77 REMARK 500 2 TRP B 41 -10.07 -170.76 REMARK 500 2 TRP B 53 109.17 147.32 REMARK 500 2 TYR B 56 74.32 65.92 REMARK 500 2 ILE B 57 -73.15 86.25 REMARK 500 2 LYS B 58 -150.13 29.44 REMARK 500 2 ASN C 91 -62.82 -92.74 REMARK 500 2 TRP C 92 89.25 -167.91 REMARK 500 2 ILE C 96 -78.10 72.71 REMARK 500 2 LYS C 97 -156.95 42.61 REMARK 500 3 TRP A 2 32.85 177.95 REMARK 500 3 ASN A 13 -72.07 -56.27 REMARK 500 3 TRP A 14 108.90 166.64 REMARK 500 3 TYR A 17 114.46 -5.13 REMARK 500 3 ILE A 18 -90.00 89.29 REMARK 500 3 LYS A 19 -153.17 41.70 REMARK 500 3 TRP B 41 1.40 -160.45 REMARK 500 3 TRP B 53 102.54 163.71 REMARK 500 3 TYR B 56 108.78 63.37 REMARK 500 3 ILE B 57 -71.80 65.39 REMARK 500 3 LYS B 58 -129.80 23.17 REMARK 500 3 TRP C 92 100.84 172.38 REMARK 500 3 TYR C 95 137.20 -20.74 REMARK 500 3 ILE C 96 -90.42 100.50 REMARK 500 3 LYS C 97 -153.43 45.67 REMARK 500 4 TRP A 2 30.24 -159.42 REMARK 500 4 TRP A 14 95.85 172.41 REMARK 500 4 TYR A 17 140.50 -12.68 REMARK 500 4 ILE A 18 -98.57 89.74 REMARK 500 4 LYS A 19 -155.40 62.35 REMARK 500 4 TRP B 41 -4.03 -140.63 REMARK 500 4 TRP B 53 111.73 154.47 REMARK 500 4 TYR B 56 73.49 52.76 REMARK 500 REMARK 500 THIS ENTRY HAS 144 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 16 TYR A 17 2 -148.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 17 0.09 SIDE CHAIN REMARK 500 1 PHE C 113 0.07 SIDE CHAIN REMARK 500 4 TYR A 17 0.10 SIDE CHAIN REMARK 500 6 TYR A 17 0.09 SIDE CHAIN REMARK 500 6 ARG A 32 0.10 SIDE CHAIN REMARK 500 7 PHE A 9 0.10 SIDE CHAIN REMARK 500 7 ARG B 71 0.10 SIDE CHAIN REMARK 500 7 TYR C 95 0.09 SIDE CHAIN REMARK 500 7 PHE C 99 0.07 SIDE CHAIN REMARK 500 8 TYR B 56 0.08 SIDE CHAIN REMARK 500 9 ARG A 32 0.12 SIDE CHAIN REMARK 500 9 ARG B 71 0.10 SIDE CHAIN REMARK 500 10 TYR A 17 0.07 SIDE CHAIN REMARK 500 10 TYR B 56 0.08 SIDE CHAIN REMARK 500 10 PHE B 60 0.08 SIDE CHAIN REMARK 500 10 ARG B 71 0.08 SIDE CHAIN REMARK 500 10 TYR C 95 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 7 VAL C 115 -10.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30472 RELATED DB: BMRB REMARK 900 OLIGOMERIC STRUCTURE OF THE HIV GP41 MPER-TMD IN PHOSPHOLIPID REMARK 900 BILAYERS DBREF 6DLN A 1 39 UNP P04578 ENV_HV1H2 665 703 DBREF 6DLN B 40 78 UNP P04578 ENV_HV1H2 665 703 DBREF 6DLN C 79 117 UNP P04578 ENV_HV1H2 665 703 SEQRES 1 A 39 LYS TRP ALA SER LEU TRP ASN TRP PHE ASN ILE THR ASN SEQRES 2 A 39 TRP LEU TRP TYR ILE LYS LEU PHE ILE MET ILE VAL GLY SEQRES 3 A 39 GLY LEU VAL GLY LEU ARG ILE VAL PHE ALA VAL LEU SER SEQRES 1 B 39 LYS TRP ALA SER LEU TRP ASN TRP PHE ASN ILE THR ASN SEQRES 2 B 39 TRP LEU TRP TYR ILE LYS LEU PHE ILE MET ILE VAL GLY SEQRES 3 B 39 GLY LEU VAL GLY LEU ARG ILE VAL PHE ALA VAL LEU SER SEQRES 1 C 39 LYS TRP ALA SER LEU TRP ASN TRP PHE ASN ILE THR ASN SEQRES 2 C 39 TRP LEU TRP TYR ILE LYS LEU PHE ILE MET ILE VAL GLY SEQRES 3 C 39 GLY LEU VAL GLY LEU ARG ILE VAL PHE ALA VAL LEU SER HELIX 1 AA1 TRP A 2 LEU A 15 1 14 HELIX 2 AA2 ILE A 18 SER A 39 1 22 HELIX 3 AA3 TRP B 41 LEU B 54 1 14 HELIX 4 AA4 ILE B 57 LEU B 77 1 21 HELIX 5 AA5 TRP C 80 ASN C 91 1 12 HELIX 6 AA6 ILE C 96 SER C 117 1 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1