HEADER CYTOSOLIC PROTEIN 02-JUN-18 6DLO TITLE CRYSTAL STRUCTURE OF LRRK2 WD40 DOMAIN DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 2; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: WD40 DOMAIN RESIDUES 2142-2527; COMPND 5 SYNONYM: DARDARIN; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LRRK2, PARK8; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PARKINSON'S DISEASE, LRRK2, WD40, CYTOSOLIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.ZHANG,H.RU,L.WANG,H.WU REVDAT 4 13-MAR-24 6DLO 1 REMARK REVDAT 3 13-FEB-19 6DLO 1 JRNL REVDAT 2 23-JAN-19 6DLO 1 JRNL REVDAT 1 09-JAN-19 6DLO 0 JRNL AUTH P.ZHANG,Y.FAN,H.RU,L.WANG,V.G.MAGUPALLI,S.S.TAYLOR, JRNL AUTH 2 D.R.ALESSI,H.WU JRNL TITL CRYSTAL STRUCTURE OF THE WD40 DOMAIN DIMER OF LRRK2. JRNL REF PROC. NATL. ACAD. SCI. V. 116 1579 2019 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30635421 JRNL DOI 10.1073/PNAS.1817889116 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 24181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.290 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 76.2860 - 6.5062 0.99 1838 166 0.2463 0.2648 REMARK 3 2 6.5062 - 5.1645 0.99 1736 160 0.2187 0.2462 REMARK 3 3 5.1645 - 4.5118 0.99 1716 151 0.1734 0.2108 REMARK 3 4 4.5118 - 4.0993 0.99 1727 151 0.1811 0.2212 REMARK 3 5 4.0993 - 3.8055 0.99 1682 153 0.2079 0.2377 REMARK 3 6 3.8055 - 3.5811 0.98 1669 143 0.2172 0.2824 REMARK 3 7 3.5811 - 3.4018 0.97 1658 151 0.2288 0.2960 REMARK 3 8 3.4018 - 3.2537 0.94 1598 142 0.2526 0.2697 REMARK 3 9 3.2537 - 3.1284 0.93 1561 149 0.2508 0.2794 REMARK 3 10 3.1284 - 3.0205 0.89 1533 124 0.2573 0.3207 REMARK 3 11 3.0205 - 2.9260 0.87 1448 142 0.2890 0.3110 REMARK 3 12 2.9260 - 2.8424 0.82 1386 125 0.3043 0.3625 REMARK 3 13 2.8424 - 2.7676 0.79 1354 104 0.3411 0.4143 REMARK 3 14 2.7676 - 2.7000 0.77 1271 143 0.3759 0.4422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4888 REMARK 3 ANGLE : 0.612 6601 REMARK 3 CHIRALITY : 0.047 806 REMARK 3 PLANARITY : 0.003 803 REMARK 3 DIHEDRAL : 10.198 2920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 3.3248 -0.1283 11.1416 REMARK 3 T TENSOR REMARK 3 T11: 0.1554 T22: 0.1674 REMARK 3 T33: 0.1484 T12: -0.0161 REMARK 3 T13: 0.0386 T23: -0.0539 REMARK 3 L TENSOR REMARK 3 L11: 1.0813 L22: 1.2419 REMARK 3 L33: 0.4312 L12: 1.1511 REMARK 3 L13: 0.2753 L23: 0.3451 REMARK 3 S TENSOR REMARK 3 S11: -0.1821 S12: 0.4606 S13: 0.0369 REMARK 3 S21: -0.2333 S22: 0.2405 S23: -0.0792 REMARK 3 S31: -0.0757 S32: 0.1733 S33: -0.0486 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DLO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 103.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL AT PH 8.5, 1 M LICL, REMARK 280 16% POLYETHYLENE GLYCOL (PEG) 6000, AND 10% ADDITIVE OF 30% REMARK 280 GALACTOSE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.64650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.33200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.79500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.33200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.64650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.79500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 2139 REMARK 465 GLY B 2140 REMARK 465 HIS B 2160 REMARK 465 ASN B 2161 REMARK 465 SER B 2162 REMARK 465 ARG B 2163 REMARK 465 ASN B 2164 REMARK 465 SER B 2252 REMARK 465 PHE B 2253 REMARK 465 SER B 2254 REMARK 465 LYS B 2255 REMARK 465 GLN B 2256 REMARK 465 SER B 2257 REMARK 465 LYS B 2258 REMARK 465 GLN B 2259 REMARK 465 GLU B 2305 REMARK 465 SER B 2306 REMARK 465 THR B 2307 REMARK 465 ASN B 2308 REMARK 465 SER B 2309 REMARK 465 THR B 2310 REMARK 465 GLU B 2311 REMARK 465 ARG B 2312 REMARK 465 ASN B 2313 REMARK 465 VAL B 2396 REMARK 465 MET B 2397 REMARK 465 VAL B 2398 REMARK 465 LYS B 2399 REMARK 465 GLU B 2400 REMARK 465 ASN B 2401 REMARK 465 LYS B 2402 REMARK 465 GLU B 2403 REMARK 465 SER B 2404 REMARK 465 LYS B 2405 REMARK 465 HIS B 2406 REMARK 465 LYS B 2407 REMARK 465 LYS B 2421 REMARK 465 ASN B 2422 REMARK 465 THR B 2423 REMARK 465 ARG B 2477 REMARK 465 LYS B 2478 REMARK 465 ASN B 2479 REMARK 465 THR B 2480 REMARK 465 GLU B 2481 REMARK 465 GLY B 2482 REMARK 465 THR B 2483 REMARK 465 GLN B 2484 REMARK 465 LYS B 2485 REMARK 465 GLN B 2486 REMARK 465 LYS B 2487 REMARK 465 ASN B 2499 REMARK 465 LEU B 2500 REMARK 465 PRO B 2501 REMARK 465 HIS B 2502 REMARK 465 GLU B 2503 REMARK 465 VAL B 2504 REMARK 465 GLN B 2505 REMARK 465 ASN B 2506 REMARK 465 LEU B 2507 REMARK 465 GLU B 2508 REMARK 465 LYS B 2509 REMARK 465 HIS B 2510 REMARK 465 ILE B 2511 REMARK 465 GLU B 2512 REMARK 465 VAL B 2513 REMARK 465 ARG B 2514 REMARK 465 LYS B 2515 REMARK 465 GLU B 2516 REMARK 465 LEU B 2517 REMARK 465 ALA B 2518 REMARK 465 GLU B 2519 REMARK 465 LYS B 2520 REMARK 465 MET B 2521 REMARK 465 ARG B 2522 REMARK 465 ARG B 2523 REMARK 465 THR B 2524 REMARK 465 SER B 2525 REMARK 465 VAL B 2526 REMARK 465 GLU B 2527 REMARK 465 GLY A 2139 REMARK 465 GLY A 2140 REMARK 465 HIS A 2159 REMARK 465 HIS A 2160 REMARK 465 ASN A 2161 REMARK 465 SER A 2162 REMARK 465 ARG A 2163 REMARK 465 SER A 2254 REMARK 465 LYS A 2255 REMARK 465 GLN A 2256 REMARK 465 SER A 2257 REMARK 465 LYS A 2258 REMARK 465 SER A 2306 REMARK 465 THR A 2307 REMARK 465 ASN A 2308 REMARK 465 SER A 2309 REMARK 465 THR A 2310 REMARK 465 GLU A 2311 REMARK 465 ARG A 2312 REMARK 465 ASN A 2313 REMARK 465 VAL A 2396 REMARK 465 MET A 2397 REMARK 465 VAL A 2398 REMARK 465 LYS A 2399 REMARK 465 GLU A 2400 REMARK 465 ASN A 2401 REMARK 465 LYS A 2402 REMARK 465 GLU A 2403 REMARK 465 SER A 2404 REMARK 465 LYS A 2405 REMARK 465 HIS A 2406 REMARK 465 LYS A 2407 REMARK 465 LEU A 2463 REMARK 465 GLY A 2464 REMARK 465 SER A 2465 REMARK 465 LEU A 2466 REMARK 465 LYS A 2467 REMARK 465 LYS A 2478 REMARK 465 ASN A 2479 REMARK 465 THR A 2480 REMARK 465 GLU A 2481 REMARK 465 GLY A 2482 REMARK 465 THR A 2483 REMARK 465 GLN A 2484 REMARK 465 LYS A 2485 REMARK 465 GLN A 2486 REMARK 465 LYS A 2487 REMARK 465 ASP A 2497 REMARK 465 ILE A 2498 REMARK 465 ASN A 2499 REMARK 465 LEU A 2500 REMARK 465 PRO A 2501 REMARK 465 HIS A 2502 REMARK 465 GLU A 2503 REMARK 465 VAL A 2504 REMARK 465 GLN A 2505 REMARK 465 ASN A 2506 REMARK 465 LEU A 2507 REMARK 465 GLU A 2508 REMARK 465 LYS A 2509 REMARK 465 HIS A 2510 REMARK 465 ILE A 2511 REMARK 465 GLU A 2512 REMARK 465 VAL A 2513 REMARK 465 ARG A 2514 REMARK 465 LYS A 2515 REMARK 465 GLU A 2516 REMARK 465 LEU A 2517 REMARK 465 ALA A 2518 REMARK 465 GLU A 2519 REMARK 465 LYS A 2520 REMARK 465 MET A 2521 REMARK 465 ARG A 2522 REMARK 465 ARG A 2523 REMARK 465 THR A 2524 REMARK 465 SER A 2525 REMARK 465 VAL A 2526 REMARK 465 GLU A 2527 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B2210 -8.80 74.58 REMARK 500 SER B2327 -52.92 -123.15 REMARK 500 ASP B2329 -5.39 72.91 REMARK 500 SER B2345 -54.01 72.28 REMARK 500 ASP B2351 51.56 -93.76 REMARK 500 ASP B2360 -63.00 -122.70 REMARK 500 THR B2361 -39.11 -130.05 REMARK 500 SER B2454 118.07 -161.49 REMARK 500 GLU A2210 -8.82 75.99 REMARK 500 ASP A2351 51.16 -92.40 REMARK 500 ASN A2422 -35.97 -144.26 REMARK 500 SER A2454 118.98 -162.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B2142 0.22 SIDE CHAIN REMARK 500 ARG B2143 0.21 SIDE CHAIN REMARK 500 ARG A2142 0.20 SIDE CHAIN REMARK 500 ARG A2143 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 6DLO B 2142 2527 UNP Q5S007 LRRK2_HUMAN 2142 2527 DBREF 6DLO A 2142 2527 UNP Q5S007 LRRK2_HUMAN 2142 2527 SEQADV 6DLO GLY B 2139 UNP Q5S007 EXPRESSION TAG SEQADV 6DLO GLY B 2140 UNP Q5S007 EXPRESSION TAG SEQADV 6DLO SER B 2141 UNP Q5S007 EXPRESSION TAG SEQADV 6DLO GLY A 2139 UNP Q5S007 EXPRESSION TAG SEQADV 6DLO GLY A 2140 UNP Q5S007 EXPRESSION TAG SEQADV 6DLO SER A 2141 UNP Q5S007 EXPRESSION TAG SEQRES 1 B 389 GLY GLY SER ARG ARG ILE LEU LEU PRO LYS ASN VAL ILE SEQRES 2 B 389 VAL GLU CYS MET VAL ALA THR HIS HIS ASN SER ARG ASN SEQRES 3 B 389 ALA SER ILE TRP LEU GLY CYS GLY HIS THR ASP ARG GLY SEQRES 4 B 389 GLN LEU SER PHE LEU ASP LEU ASN THR GLU GLY TYR THR SEQRES 5 B 389 SER GLU GLU VAL ALA ASP SER ARG ILE LEU CYS LEU ALA SEQRES 6 B 389 LEU VAL HIS LEU PRO VAL GLU LYS GLU SER TRP ILE VAL SEQRES 7 B 389 SER GLY THR GLN SER GLY THR LEU LEU VAL ILE ASN THR SEQRES 8 B 389 GLU ASP GLY LYS LYS ARG HIS THR LEU GLU LYS MET THR SEQRES 9 B 389 ASP SER VAL THR CYS LEU TYR CYS ASN SER PHE SER LYS SEQRES 10 B 389 GLN SER LYS GLN LYS ASN PHE LEU LEU VAL GLY THR ALA SEQRES 11 B 389 ASP GLY LYS LEU ALA ILE PHE GLU ASP LYS THR VAL LYS SEQRES 12 B 389 LEU LYS GLY ALA ALA PRO LEU LYS ILE LEU ASN ILE GLY SEQRES 13 B 389 ASN VAL SER THR PRO LEU MET CYS LEU SER GLU SER THR SEQRES 14 B 389 ASN SER THR GLU ARG ASN VAL MET TRP GLY GLY CYS GLY SEQRES 15 B 389 THR LYS ILE PHE SER PHE SER ASN ASP PHE THR ILE GLN SEQRES 16 B 389 LYS LEU ILE GLU THR ARG THR SER GLN LEU PHE SER TYR SEQRES 17 B 389 ALA ALA PHE SER ASP SER ASN ILE ILE THR VAL VAL VAL SEQRES 18 B 389 ASP THR ALA LEU TYR ILE ALA LYS GLN ASN SER PRO VAL SEQRES 19 B 389 VAL GLU VAL TRP ASP LYS LYS THR GLU LYS LEU CYS GLY SEQRES 20 B 389 LEU ILE ASP CYS VAL HIS PHE LEU ARG GLU VAL MET VAL SEQRES 21 B 389 LYS GLU ASN LYS GLU SER LYS HIS LYS MET SER TYR SER SEQRES 22 B 389 GLY ARG VAL LYS THR LEU CYS LEU GLN LYS ASN THR ALA SEQRES 23 B 389 LEU TRP ILE GLY THR GLY GLY GLY HIS ILE LEU LEU LEU SEQRES 24 B 389 ASP LEU SER THR ARG ARG LEU ILE ARG VAL ILE TYR ASN SEQRES 25 B 389 PHE CYS ASN SER VAL ARG VAL MET MET THR ALA GLN LEU SEQRES 26 B 389 GLY SER LEU LYS ASN VAL MET LEU VAL LEU GLY TYR ASN SEQRES 27 B 389 ARG LYS ASN THR GLU GLY THR GLN LYS GLN LYS GLU ILE SEQRES 28 B 389 GLN SER CYS LEU THR VAL TRP ASP ILE ASN LEU PRO HIS SEQRES 29 B 389 GLU VAL GLN ASN LEU GLU LYS HIS ILE GLU VAL ARG LYS SEQRES 30 B 389 GLU LEU ALA GLU LYS MET ARG ARG THR SER VAL GLU SEQRES 1 A 389 GLY GLY SER ARG ARG ILE LEU LEU PRO LYS ASN VAL ILE SEQRES 2 A 389 VAL GLU CYS MET VAL ALA THR HIS HIS ASN SER ARG ASN SEQRES 3 A 389 ALA SER ILE TRP LEU GLY CYS GLY HIS THR ASP ARG GLY SEQRES 4 A 389 GLN LEU SER PHE LEU ASP LEU ASN THR GLU GLY TYR THR SEQRES 5 A 389 SER GLU GLU VAL ALA ASP SER ARG ILE LEU CYS LEU ALA SEQRES 6 A 389 LEU VAL HIS LEU PRO VAL GLU LYS GLU SER TRP ILE VAL SEQRES 7 A 389 SER GLY THR GLN SER GLY THR LEU LEU VAL ILE ASN THR SEQRES 8 A 389 GLU ASP GLY LYS LYS ARG HIS THR LEU GLU LYS MET THR SEQRES 9 A 389 ASP SER VAL THR CYS LEU TYR CYS ASN SER PHE SER LYS SEQRES 10 A 389 GLN SER LYS GLN LYS ASN PHE LEU LEU VAL GLY THR ALA SEQRES 11 A 389 ASP GLY LYS LEU ALA ILE PHE GLU ASP LYS THR VAL LYS SEQRES 12 A 389 LEU LYS GLY ALA ALA PRO LEU LYS ILE LEU ASN ILE GLY SEQRES 13 A 389 ASN VAL SER THR PRO LEU MET CYS LEU SER GLU SER THR SEQRES 14 A 389 ASN SER THR GLU ARG ASN VAL MET TRP GLY GLY CYS GLY SEQRES 15 A 389 THR LYS ILE PHE SER PHE SER ASN ASP PHE THR ILE GLN SEQRES 16 A 389 LYS LEU ILE GLU THR ARG THR SER GLN LEU PHE SER TYR SEQRES 17 A 389 ALA ALA PHE SER ASP SER ASN ILE ILE THR VAL VAL VAL SEQRES 18 A 389 ASP THR ALA LEU TYR ILE ALA LYS GLN ASN SER PRO VAL SEQRES 19 A 389 VAL GLU VAL TRP ASP LYS LYS THR GLU LYS LEU CYS GLY SEQRES 20 A 389 LEU ILE ASP CYS VAL HIS PHE LEU ARG GLU VAL MET VAL SEQRES 21 A 389 LYS GLU ASN LYS GLU SER LYS HIS LYS MET SER TYR SER SEQRES 22 A 389 GLY ARG VAL LYS THR LEU CYS LEU GLN LYS ASN THR ALA SEQRES 23 A 389 LEU TRP ILE GLY THR GLY GLY GLY HIS ILE LEU LEU LEU SEQRES 24 A 389 ASP LEU SER THR ARG ARG LEU ILE ARG VAL ILE TYR ASN SEQRES 25 A 389 PHE CYS ASN SER VAL ARG VAL MET MET THR ALA GLN LEU SEQRES 26 A 389 GLY SER LEU LYS ASN VAL MET LEU VAL LEU GLY TYR ASN SEQRES 27 A 389 ARG LYS ASN THR GLU GLY THR GLN LYS GLN LYS GLU ILE SEQRES 28 A 389 GLN SER CYS LEU THR VAL TRP ASP ILE ASN LEU PRO HIS SEQRES 29 A 389 GLU VAL GLN ASN LEU GLU LYS HIS ILE GLU VAL ARG LYS SEQRES 30 A 389 GLU LEU ALA GLU LYS MET ARG ARG THR SER VAL GLU FORMUL 3 HOH *66(H2 O) HELIX 1 AA1 LYS B 2278 LEU B 2282 5 5 HELIX 2 AA2 ARG B 2339 PHE B 2344 5 6 HELIX 3 AA3 TYR B 2346 ASP B 2351 1 6 HELIX 4 AA4 CYS B 2389 ARG B 2394 1 6 HELIX 5 AA5 LYS A 2278 LEU A 2282 5 5 HELIX 6 AA6 TYR A 2346 ASP A 2351 1 6 HELIX 7 AA7 CYS A 2389 ARG A 2394 1 6 SHEET 1 AA1 4 ARG B2142 LEU B2145 0 SHEET 2 AA1 4 SER B2491 ASP B2497 -1 O LEU B2493 N ILE B2144 SHEET 3 AA1 4 ASN B2468 TYR B2475 -1 N MET B2470 O TRP B2496 SHEET 4 AA1 4 SER B2454 GLN B2462 -1 N MET B2459 O LEU B2471 SHEET 1 AA2 4 VAL B2152 THR B2158 0 SHEET 2 AA2 4 SER B2166 CYS B2171 -1 O TRP B2168 N VAL B2156 SHEET 3 AA2 4 GLY B2177 ASP B2183 -1 O SER B2180 N LEU B2169 SHEET 4 AA2 4 TYR B2189 ALA B2195 -1 O THR B2190 N PHE B2181 SHEET 1 AA3 4 ILE B2199 LEU B2207 0 SHEET 2 AA3 4 GLU B2212 THR B2219 -1 O VAL B2216 N ALA B2203 SHEET 3 AA3 4 LEU B2224 ASN B2228 -1 O ILE B2227 N ILE B2215 SHEET 4 AA3 4 ARG B2235 THR B2237 -1 O HIS B2236 N VAL B2226 SHEET 1 AA4 4 VAL B2245 ASN B2251 0 SHEET 2 AA4 4 PHE B2262 THR B2267 -1 O LEU B2264 N TYR B2249 SHEET 3 AA4 4 LYS B2271 GLU B2276 -1 O ALA B2273 N VAL B2265 SHEET 4 AA4 4 LYS B2289 ASN B2292 -1 O LEU B2291 N LEU B2272 SHEET 1 AA5 4 LEU B2300 SER B2304 0 SHEET 2 AA5 4 MET B2315 CYS B2319 -1 O TRP B2316 N SER B2304 SHEET 3 AA5 4 LYS B2322 PHE B2326 -1 O PHE B2326 N MET B2315 SHEET 4 AA5 4 LEU B2335 GLU B2337 -1 O ILE B2336 N ILE B2323 SHEET 1 AA6 4 ILE B2354 VAL B2359 0 SHEET 2 AA6 4 LEU B2363 LYS B2367 -1 O ALA B2366 N ILE B2355 SHEET 3 AA6 4 VAL B2372 TRP B2376 -1 O TRP B2376 N LEU B2363 SHEET 4 AA6 4 LEU B2383 ASP B2388 -1 O CYS B2384 N VAL B2375 SHEET 1 AA7 4 VAL B2414 CYS B2418 0 SHEET 2 AA7 4 LEU B2425 THR B2429 -1 O TRP B2426 N CYS B2418 SHEET 3 AA7 4 ILE B2434 LEU B2437 -1 O LEU B2435 N ILE B2427 SHEET 4 AA7 4 LEU B2444 ILE B2448 -1 O ILE B2448 N ILE B2434 SHEET 1 AA8 4 ARG A2142 LEU A2145 0 SHEET 2 AA8 4 GLN A2490 TRP A2496 -1 O VAL A2495 N ARG A2142 SHEET 3 AA8 4 VAL A2469 ASN A2476 -1 N GLY A2474 O CYS A2492 SHEET 4 AA8 4 VAL A2455 ALA A2461 -1 N MET A2459 O LEU A2471 SHEET 1 AA9 4 VAL A2152 THR A2158 0 SHEET 2 AA9 4 SER A2166 CYS A2171 -1 O TRP A2168 N VAL A2156 SHEET 3 AA9 4 GLY A2177 ASP A2183 -1 O SER A2180 N LEU A2169 SHEET 4 AA9 4 TYR A2189 ALA A2195 -1 O THR A2190 N PHE A2181 SHEET 1 AB1 4 ILE A2199 LEU A2207 0 SHEET 2 AB1 4 GLU A2212 THR A2219 -1 O VAL A2216 N ALA A2203 SHEET 3 AB1 4 LEU A2224 ASN A2228 -1 O LEU A2225 N SER A2217 SHEET 4 AB1 4 ARG A2235 THR A2237 -1 O HIS A2236 N VAL A2226 SHEET 1 AB2 4 VAL A2245 SER A2252 0 SHEET 2 AB2 4 ASN A2261 THR A2267 -1 O LEU A2264 N TYR A2249 SHEET 3 AB2 4 LYS A2271 GLU A2276 -1 O ALA A2273 N VAL A2265 SHEET 4 AB2 4 LYS A2289 ASN A2292 -1 O LEU A2291 N LEU A2272 SHEET 1 AB3 4 LEU A2300 SER A2304 0 SHEET 2 AB3 4 MET A2315 CYS A2319 -1 O TRP A2316 N SER A2304 SHEET 3 AB3 4 LYS A2322 PHE A2326 -1 O LYS A2322 N CYS A2319 SHEET 4 AB3 4 ILE A2332 GLU A2337 -1 O ILE A2336 N ILE A2323 SHEET 1 AB4 4 ILE A2354 VAL A2359 0 SHEET 2 AB4 4 LEU A2363 LYS A2367 -1 O ALA A2366 N ILE A2355 SHEET 3 AB4 4 VAL A2372 TRP A2376 -1 O TRP A2376 N LEU A2363 SHEET 4 AB4 4 LEU A2383 ASP A2388 -1 O CYS A2384 N VAL A2375 SHEET 1 AB5 4 VAL A2414 LEU A2419 0 SHEET 2 AB5 4 ALA A2424 THR A2429 -1 O TRP A2426 N CYS A2418 SHEET 3 AB5 4 ILE A2434 ASP A2438 -1 O LEU A2435 N ILE A2427 SHEET 4 AB5 4 LEU A2444 ILE A2448 -1 O ILE A2445 N LEU A2436 CRYST1 79.293 103.590 112.664 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012611 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008876 0.00000