data_6DLQ # _entry.id 6DLQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DLQ pdb_00006dlq 10.2210/pdb6dlq/pdb WWPDB D_1000234879 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-11-14 2 'Structure model' 1 1 2020-01-01 3 'Structure model' 1 2 2020-07-29 4 'Structure model' 1 3 2024-03-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Structure summary' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_chem_comp_identifier 5 3 'Structure model' pdbx_entity_nonpoly 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_conn_type 8 3 'Structure model' struct_site 9 3 'Structure model' struct_site_gen 10 4 'Structure model' chem_comp 11 4 'Structure model' chem_comp_atom 12 4 'Structure model' chem_comp_bond 13 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_chem_comp.mon_nstd_flag' 3 3 'Structure model' '_chem_comp.name' 4 3 'Structure model' '_chem_comp.type' 5 3 'Structure model' '_entity.pdbx_description' 6 3 'Structure model' '_pdbx_entity_nonpoly.name' 7 3 'Structure model' '_struct_conn.conn_type_id' 8 3 'Structure model' '_struct_conn.id' 9 3 'Structure model' '_struct_conn.pdbx_dist_value' 10 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 3 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 12 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 3 'Structure model' '_struct_conn.ptnr2_symmetry' 25 3 'Structure model' '_struct_conn_type.id' 26 4 'Structure model' '_chem_comp.pdbx_synonyms' 27 4 'Structure model' '_database_2.pdbx_DOI' 28 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DLQ _pdbx_database_status.recvd_initial_deposition_date 2018-06-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Peselis, A.' 1 ? 'Serganov, A.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 887 _citation.page_last 894 _citation.title 'ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-018-0114-4 _citation.pdbx_database_id_PubMed 30120360 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Peselis, A.' 1 ? primary 'Serganov, A.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PRPP Riboswitch' 34902.508 1 ? ? ? ? 2 non-polymer syn 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose 390.070 1 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 12 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 4 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 6 water nat water 18.015 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GAAAGUGUGUCUAGGGUUCCGCGUGCUUCGGCACGGACUGGUCCAAGUGACACAGACGCAUUCGUGCGUUACACC GGAGGGAUAGAAGCCCAGGCGGGUAGGUUU(CCC) ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAAAGUGUGUCUAGGGUUCCGCGUGCUUCGGCACGGACUGGUCCAAGUGACACAGACGCAUUCGUGCGUUACACCGGAG GGAUAGAAGCCCAGGCGGGUAGGUUUC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose PRP 3 'MANGANESE (II) ION' MN 4 'SODIUM ION' NA 5 'POTASSIUM ION' K 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 A n 1 4 A n 1 5 A n 1 6 G n 1 7 U n 1 8 G n 1 9 U n 1 10 G n 1 11 U n 1 12 C n 1 13 U n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 U n 1 20 C n 1 21 C n 1 22 G n 1 23 C n 1 24 G n 1 25 U n 1 26 G n 1 27 C n 1 28 U n 1 29 U n 1 30 C n 1 31 G n 1 32 G n 1 33 C n 1 34 A n 1 35 C n 1 36 G n 1 37 G n 1 38 A n 1 39 C n 1 40 U n 1 41 G n 1 42 G n 1 43 U n 1 44 C n 1 45 C n 1 46 A n 1 47 A n 1 48 G n 1 49 U n 1 50 G n 1 51 A n 1 52 C n 1 53 A n 1 54 C n 1 55 A n 1 56 G n 1 57 A n 1 58 C n 1 59 G n 1 60 C n 1 61 A n 1 62 U n 1 63 U n 1 64 C n 1 65 G n 1 66 U n 1 67 G n 1 68 C n 1 69 G n 1 70 U n 1 71 U n 1 72 A n 1 73 C n 1 74 A n 1 75 C n 1 76 C n 1 77 G n 1 78 G n 1 79 A n 1 80 G n 1 81 G n 1 82 G n 1 83 A n 1 84 U n 1 85 A n 1 86 G n 1 87 A n 1 88 A n 1 89 G n 1 90 C n 1 91 C n 1 92 C n 1 93 A n 1 94 G n 1 95 G n 1 96 C n 1 97 G n 1 98 G n 1 99 G n 1 100 U n 1 101 A n 1 102 G n 1 103 G n 1 104 U n 1 105 U n 1 106 U n 1 107 CCC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 107 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Syntrophothermus lipocalidus DSM 12680' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 643648 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PRP D-saccharide n 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose ;ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribose; 1-O-pyrophosphono-5-O-phosphono-D-ribose; 1-O-pyrophosphono-5-O-phosphono-ribose ; 'C5 H13 O14 P3' 390.070 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _pdbx_chem_comp_identifier.comp_id PRP _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier a-D-Ribf1PO35PO3 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 U 13 13 13 U U A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 U 19 19 19 U U A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 G 26 26 26 G G A . n A 1 27 C 27 27 27 C C A . n A 1 28 U 28 28 28 U U A . n A 1 29 U 29 29 29 U U A . n A 1 30 C 30 30 30 C C A . n A 1 31 G 31 31 31 G G A . n A 1 32 G 32 32 32 G G A . n A 1 33 C 33 33 33 C C A . n A 1 34 A 34 34 34 A A A . n A 1 35 C 35 35 35 C C A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 A 38 38 38 A A A . n A 1 39 C 39 39 39 C C A . n A 1 40 U 40 40 40 U U A . n A 1 41 G 41 41 41 G G A . n A 1 42 G 42 42 42 G G A . n A 1 43 U 43 43 43 U U A . n A 1 44 C 44 44 44 C C A . n A 1 45 C 45 45 45 C C A . n A 1 46 A 46 46 46 A A A . n A 1 47 A 47 47 47 A A A . n A 1 48 G 48 48 48 G G A . n A 1 49 U 49 49 49 U U A . n A 1 50 G 50 50 50 G G A . n A 1 51 A 51 51 51 A A A . n A 1 52 C 52 52 52 C C A . n A 1 53 A 53 53 53 A A A . n A 1 54 C 54 54 54 C C A . n A 1 55 A 55 55 55 A A A . n A 1 56 G 56 56 56 G G A . n A 1 57 A 57 57 57 A A A . n A 1 58 C 58 58 58 C C A . n A 1 59 G 59 59 59 G G A . n A 1 60 C 60 60 60 C C A . n A 1 61 A 61 61 61 A A A . n A 1 62 U 62 62 62 U U A . n A 1 63 U 63 63 63 U U A . n A 1 64 C 64 64 64 C C A . n A 1 65 G 65 65 65 G G A . n A 1 66 U 66 66 66 U U A . n A 1 67 G 67 67 67 G G A . n A 1 68 C 68 68 68 C C A . n A 1 69 G 69 69 69 G G A . n A 1 70 U 70 70 70 U U A . n A 1 71 U 71 71 71 U U A . n A 1 72 A 72 72 72 A A A . n A 1 73 C 73 73 73 C C A . n A 1 74 A 74 74 74 A A A . n A 1 75 C 75 75 75 C C A . n A 1 76 C 76 76 76 C C A . n A 1 77 G 77 77 77 G G A . n A 1 78 G 78 78 78 G G A . n A 1 79 A 79 79 79 A A A . n A 1 80 G 80 80 80 G G A . n A 1 81 G 81 81 81 G G A . n A 1 82 G 82 82 82 G G A . n A 1 83 A 83 83 83 A A A . n A 1 84 U 84 84 84 U U A . n A 1 85 A 85 85 85 A A A . n A 1 86 G 86 86 86 G G A . n A 1 87 A 87 87 87 A A A . n A 1 88 A 88 88 88 A A A . n A 1 89 G 89 89 89 G G A . n A 1 90 C 90 90 90 C C A . n A 1 91 C 91 91 91 C C A . n A 1 92 C 92 92 92 C C A . n A 1 93 A 93 93 93 A A A . n A 1 94 G 94 94 94 G G A . n A 1 95 G 95 95 95 G G A . n A 1 96 C 96 96 96 C C A . n A 1 97 G 97 97 97 G G A . n A 1 98 G 98 98 98 G G A . n A 1 99 G 99 99 99 G G A . n A 1 100 U 100 100 100 U U A . n A 1 101 A 101 101 101 A A A . n A 1 102 G 102 102 102 G G A . n A 1 103 G 103 103 103 G G A . n A 1 104 U 104 104 104 U U A . n A 1 105 U 105 105 105 U U A . n A 1 106 U 106 106 106 U U A . n A 1 107 CCC 107 107 107 CCC CCC A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PRP 1 201 503 PRP PRP A . C 3 MN 1 202 1 MN MN A . D 3 MN 1 203 2 MN MN A . E 3 MN 1 204 3 MN MN A . F 3 MN 1 205 4 MN MN A . G 3 MN 1 206 5 MN MN A . H 3 MN 1 207 6 MN MN A . I 3 MN 1 208 7 MN MN A . J 3 MN 1 209 8 MN MN A . K 3 MN 1 210 9 MN MN A . L 3 MN 1 211 10 MN MN A . M 3 MN 1 212 11 MN MN A . N 3 MN 1 213 12 MN MN A . O 4 NA 1 214 13 NA NA A . P 4 NA 1 215 14 NA NA A . Q 4 NA 1 216 15 NA NA A . R 4 NA 1 217 16 NA NA A . S 5 K 1 218 17 K K A . T 6 HOH 1 301 3 HOH HOH A . T 6 HOH 2 302 2 HOH HOH A . T 6 HOH 3 303 8 HOH HOH A . T 6 HOH 4 304 5 HOH HOH A . T 6 HOH 5 305 4 HOH HOH A . T 6 HOH 6 306 6 HOH HOH A . T 6 HOH 7 307 1 HOH HOH A . T 6 HOH 8 308 7 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? '(1.12_2829: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 122.52 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6DLQ _cell.details ? _cell.formula_units_Z ? _cell.length_a 85.321 _cell.length_a_esd ? _cell.length_b 90.506 _cell.length_b_esd ? _cell.length_c 73.482 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DLQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DLQ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.43 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 64.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M NH4-acetate, 0.1 M HEPES-KOH pH 7.4, and 45% 2-methyl-2,4-pentanediol (v/v)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-09-21 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-2 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6DLQ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.8 _reflns.d_resolution_low 20.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21504 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.1 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 28.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.040 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.987 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 20.0 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.518 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.3269 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DLQ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.8 _refine.ls_d_res_low 20.0 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21504 _refine.ls_number_reflns_R_free 2188 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.15 _refine.ls_percent_reflns_R_free 10.17 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2287 _refine.ls_R_factor_R_free 0.2542 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2258 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 33.58 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.43 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2310 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 2357 _refine_hist.d_res_high 2.8 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.002 ? 2606 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.580 ? 4070 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 16.224 ? 1298 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.026 ? 537 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 108 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.7977 2.8584 . . 102 934 73.00 . . . 0.6085 . 0.5863 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8584 2.9247 . . 143 1084 86.00 . . . 0.4206 . 0.4536 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9247 2.9976 . . 118 1134 89.00 . . . 0.3870 . 0.3904 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9976 3.0783 . . 122 1239 93.00 . . . 0.3454 . 0.3522 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0783 3.1686 . . 159 1143 93.00 . . . 0.3392 . 0.3189 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1686 3.2704 . . 116 1271 96.00 . . . 0.3455 . 0.2887 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2704 3.3868 . . 165 1194 96.00 . . . 0.2451 . 0.2571 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3868 3.5217 . . 139 1257 98.00 . . . 0.2909 . 0.2583 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5217 3.6810 . . 135 1285 98.00 . . . 0.3293 . 0.2506 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6810 3.8738 . . 138 1264 99.00 . . . 0.2512 . 0.2267 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.8738 4.1145 . . 145 1250 99.00 . . . 0.2299 . 0.2130 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.1145 4.4290 . . 145 1228 98.00 . . . 0.2288 . 0.2033 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.4290 4.8688 . . 136 1287 98.00 . . . 0.2120 . 0.2030 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.8688 5.5601 . . 154 1230 98.00 . . . 0.1990 . 0.1726 . . . . . . . . . . 'X-RAY DIFFRACTION' 5.5601 6.9556 . . 137 1281 98.00 . . . 0.2228 . 0.1894 . . . . . . . . . . 'X-RAY DIFFRACTION' 6.9556 19.9838 . . 134 1235 96.00 . . . 0.2181 . 0.1777 . . . . . . . . . . # _struct.entry_id 6DLQ _struct.title 'PRPP Riboswitch bound to PRPP, manganese chloride soaked structure' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DLQ _struct_keywords.text 'riboswitch, non-coding, RNA, yKKC' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 4 ? S N N 5 ? T N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6DLQ _struct_ref.pdbx_db_accession 6DLQ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6DLQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 107 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6DLQ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 107 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 107 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale2 covale both ? A U 106 "O3'" ? ? ? 1_555 A CCC 107 P ? ? A U 106 A CCC 107 1_555 ? ? ? ? ? ? ? 1.606 ? ? metalc1 metalc ? ? A GTP 1 O2G ? ? ? 1_555 N MN . MN ? ? A GTP 1 A MN 213 1_555 ? ? ? ? ? ? ? 2.289 ? ? metalc2 metalc ? ? A A 14 OP2 ? ? ? 1_555 F MN . MN ? ? A A 14 A MN 205 1_555 ? ? ? ? ? ? ? 2.617 ? ? metalc3 metalc ? ? A G 15 N7 ? ? ? 1_555 F MN . MN ? ? A G 15 A MN 205 1_555 ? ? ? ? ? ? ? 2.573 ? ? metalc4 metalc ? ? A U 18 O4 ? ? ? 1_555 K MN . MN ? ? A U 18 A MN 210 1_555 ? ? ? ? ? ? ? 2.652 ? ? metalc5 metalc ? ? A C 30 OP1 ? ? ? 1_555 S K . K ? ? A C 30 A K 218 1_555 ? ? ? ? ? ? ? 2.938 ? ? metalc6 metalc ? ? A G 31 O6 ? ? ? 1_555 S K . K ? ? A G 31 A K 218 1_555 ? ? ? ? ? ? ? 3.378 ? ? metalc7 metalc ? ? A A 38 N7 ? ? ? 1_555 J MN . MN ? ? A A 38 A MN 209 1_555 ? ? ? ? ? ? ? 2.764 ? ? metalc8 metalc ? ? A G 48 OP1 ? ? ? 1_555 C MN . MN ? ? A G 48 A MN 202 1_555 ? ? ? ? ? ? ? 2.389 ? ? metalc9 metalc ? ? A G 48 OP2 ? ? ? 1_555 D MN . MN ? ? A G 48 A MN 203 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc10 metalc ? ? A G 48 O6 ? ? ? 1_555 L MN . MN ? ? A G 48 A MN 211 1_555 ? ? ? ? ? ? ? 2.516 ? ? metalc11 metalc ? ? A U 49 O2 ? ? ? 1_555 H MN . MN ? ? A U 49 A MN 207 1_555 ? ? ? ? ? ? ? 2.175 ? ? metalc12 metalc ? ? A C 75 OP2 ? ? ? 1_555 H MN . MN ? ? A C 75 A MN 207 1_555 ? ? ? ? ? ? ? 2.033 ? ? metalc13 metalc ? ? A U 84 "O3'" ? ? ? 1_555 S K . K ? ? A U 84 A K 218 2_555 ? ? ? ? ? ? ? 3.186 ? ? metalc14 metalc ? ? A U 84 "O2'" ? ? ? 1_555 S K . K ? ? A U 84 A K 218 2_555 ? ? ? ? ? ? ? 3.019 ? ? metalc15 metalc ? ? A C 90 OP1 ? ? ? 1_555 C MN . MN ? ? A C 90 A MN 202 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc16 metalc ? ? A C 91 OP2 ? ? ? 1_555 C MN . MN ? ? A C 91 A MN 202 1_555 ? ? ? ? ? ? ? 2.166 ? ? metalc17 metalc ? ? A C 91 OP1 ? ? ? 1_555 D MN . MN ? ? A C 91 A MN 203 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc18 metalc ? ? A G 94 OP1 ? ? ? 1_555 E MN . MN ? ? A G 94 A MN 204 1_555 ? ? ? ? ? ? ? 2.351 ? ? metalc19 metalc ? ? A G 103 OP2 ? ? ? 1_555 N MN . MN ? ? A G 103 A MN 213 1_555 ? ? ? ? ? ? ? 2.517 ? ? metalc20 metalc ? ? A G 103 N7 ? ? ? 1_555 N MN . MN ? ? A G 103 A MN 213 1_555 ? ? ? ? ? ? ? 2.488 ? ? metalc21 metalc ? ? B PRP . O2P A ? ? 1_555 H MN . MN ? ? A PRP 201 A MN 207 1_555 ? ? ? ? ? ? ? 2.048 ? ? metalc22 metalc ? ? B PRP . O1P A ? ? 1_555 L MN . MN ? ? A PRP 201 A MN 211 1_555 ? ? ? ? ? ? ? 2.478 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A CCC 107 N3 ? ? A G 2 A CCC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A CCC 107 O2 ? ? A G 2 A CCC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A CCC 107 N4 ? ? A G 2 A CCC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 106 N3 ? ? A A 3 A U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 106 O4 ? ? A A 3 A U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 105 N3 ? ? A A 4 A U 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 105 O4 ? ? A A 4 A U 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 104 N3 ? ? A A 5 A U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 104 O4 ? ? A A 5 A U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 6 N2 ? ? ? 1_555 A A 72 N1 ? ? A G 6 A A 72 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog11 hydrog ? ? A G 6 N3 ? ? ? 1_555 A A 72 N6 ? ? A G 6 A A 72 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog12 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 55 N1 ? ? A U 7 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 55 N6 ? ? A U 7 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 54 N3 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 54 O2 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 54 N4 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 53 N1 ? ? A U 9 A A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 53 N6 ? ? A U 9 A A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 52 N3 ? ? A G 10 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 52 O2 ? ? A G 10 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 52 N4 ? ? A G 10 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 51 N1 ? ? A U 11 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 51 N6 ? ? A U 11 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 50 N1 ? ? A C 12 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 12 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 50 N2 ? ? A C 12 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 47 N7 ? ? A U 13 A A 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog28 hydrog ? ? A U 13 O2 ? ? ? 1_555 A A 47 N6 ? ? A U 13 A A 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog29 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 46 N3 ? ? A A 14 A A 46 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog30 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 15 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 15 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 15 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 16 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 16 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 16 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 N2 ? ? ? 1_555 A U 19 O4 ? ? A G 17 A U 19 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 17 N1 ? ? ? 1_555 A U 43 O4 ? ? A G 17 A U 43 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog38 hydrog ? ? A G 17 N2 ? ? ? 1_555 A A 85 N1 ? ? A G 17 A A 85 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog39 hydrog ? ? A U 18 O2 ? ? ? 1_555 A C 20 N4 ? ? A U 18 A C 20 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog40 hydrog ? ? A U 19 O4 ? ? ? 1_555 A U 43 N3 ? ? A U 19 A U 43 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog41 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 20 N3 ? ? ? 1_555 A U 43 N3 ? ? A C 20 A U 43 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog45 hydrog ? ? A C 20 N4 ? ? ? 1_555 A U 43 O4 ? ? A C 20 A U 43 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog46 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 21 A G 37 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog47 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 21 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 21 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 21 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 22 N2 ? ? ? 1_555 A U 40 O4 ? ? A G 22 A U 40 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog54 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 24 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 24 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 24 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 25 N3 ? ? ? 1_555 A A 34 N1 ? ? A U 25 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 25 O4 ? ? ? 1_555 A A 34 N6 ? ? A U 25 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 26 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 26 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 26 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A U 28 O2 ? ? ? 1_555 A G 31 N1 ? ? A U 28 A G 31 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog69 hydrog ? ? A G 37 N1 ? ? ? 1_555 A G 41 O6 ? ? A G 37 A G 41 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog70 hydrog ? ? A G 37 N2 ? ? ? 1_555 A G 41 N7 ? ? A G 37 A G 41 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog71 hydrog ? ? A G 48 N2 ? ? ? 1_555 A A 74 N3 ? ? A G 48 A A 74 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog72 hydrog ? ? A G 56 N1 ? ? ? 1_555 A U 71 O2 ? ? A G 56 A U 71 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog73 hydrog ? ? A G 56 O6 ? ? ? 1_555 A U 71 N3 ? ? A G 56 A U 71 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog74 hydrog ? ? A A 57 N1 ? ? ? 1_555 A U 70 N3 ? ? A A 57 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 57 N6 ? ? ? 1_555 A U 70 O4 ? ? A A 57 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 69 N1 ? ? A C 58 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 69 O6 ? ? A C 58 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 69 N2 ? ? A C 58 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 59 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 59 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 59 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 59 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 59 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 59 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 60 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 60 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 60 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 60 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 60 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 60 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A A 61 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 61 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A A 61 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 61 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A U 62 O2 ? ? ? 1_555 A G 65 N2 ? ? A U 62 A G 65 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog88 hydrog ? ? A C 73 N3 ? ? ? 1_555 A G 94 N1 ? ? A C 73 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A C 73 N4 ? ? ? 1_555 A G 94 O6 ? ? A C 73 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A C 73 O2 ? ? ? 1_555 A G 94 N2 ? ? A C 73 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A C 73 O2 ? ? ? 1_555 A G 103 N2 ? ? A C 73 A G 103 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog92 hydrog ? ? A C 75 N3 ? ? ? 1_555 A G 98 N1 ? ? A C 75 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A C 75 N4 ? ? ? 1_555 A G 98 O6 ? ? A C 75 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A C 75 O2 ? ? ? 1_555 A G 98 N2 ? ? A C 75 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A C 76 N3 ? ? ? 1_555 A G 97 N1 ? ? A C 76 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A C 76 N4 ? ? ? 1_555 A G 97 O6 ? ? A C 76 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A C 76 O2 ? ? ? 1_555 A G 97 N2 ? ? A C 76 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A G 77 N1 ? ? ? 1_555 A C 96 N3 ? ? A G 77 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A G 77 N2 ? ? ? 1_555 A C 96 O2 ? ? A G 77 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A G 77 O6 ? ? ? 1_555 A C 96 N4 ? ? A G 77 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A G 78 O6 ? ? ? 1_555 A G 95 N1 ? ? A G 78 A G 95 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog102 hydrog ? ? A A 79 N1 ? ? ? 1_555 A A 93 N6 ? ? A A 79 A A 93 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog103 hydrog ? ? A A 79 N6 ? ? ? 1_555 A A 93 N1 ? ? A A 79 A A 93 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog104 hydrog ? ? A G 80 N1 ? ? ? 1_555 A C 92 N3 ? ? A G 80 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A G 80 N2 ? ? ? 1_555 A C 92 O2 ? ? A G 80 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A G 80 O6 ? ? ? 1_555 A C 92 N4 ? ? A G 80 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A G 81 N1 ? ? ? 1_555 A C 91 N3 ? ? A G 81 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A G 81 N2 ? ? ? 1_555 A C 91 O2 ? ? A G 81 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A G 81 O6 ? ? ? 1_555 A C 91 N4 ? ? A G 81 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A G 82 N1 ? ? ? 1_555 A C 90 N3 ? ? A G 82 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A G 82 N2 ? ? ? 1_555 A C 90 O2 ? ? A G 82 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A G 82 O6 ? ? ? 1_555 A C 90 N4 ? ? A G 82 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A A 83 N1 ? ? ? 1_555 A A 88 N6 ? ? A A 83 A A 88 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog114 hydrog ? ? A U 84 N3 ? ? ? 1_555 A A 87 N7 ? ? A U 84 A A 87 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog115 hydrog ? ? A U 84 O2 ? ? ? 1_555 A A 87 N6 ? ? A U 84 A A 87 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog116 hydrog ? ? A G 99 N2 ? ? ? 1_555 A A 101 N7 ? ? A G 99 A A 101 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2G ? A GTP 1 ? A GTP 1 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 OP2 ? A G 103 ? A G 103 ? 1_555 133.6 ? 2 O2G ? A GTP 1 ? A GTP 1 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 N7 ? A G 103 ? A G 103 ? 1_555 76.1 ? 3 OP2 ? A G 103 ? A G 103 ? 1_555 MN ? N MN . ? A MN 213 ? 1_555 N7 ? A G 103 ? A G 103 ? 1_555 126.1 ? 4 OP2 ? A A 14 ? A A 14 ? 1_555 MN ? F MN . ? A MN 205 ? 1_555 N7 ? A G 15 ? A G 15 ? 1_555 86.3 ? 5 OP1 ? A C 30 ? A C 30 ? 1_555 K ? S K . ? A K 218 ? 1_555 O6 ? A G 31 ? A G 31 ? 1_555 95.0 ? 6 OP1 ? A C 30 ? A C 30 ? 1_555 K ? S K . ? A K 218 ? 1_555 "O3'" ? A U 84 ? A U 84 ? 1_555 131.0 ? 7 O6 ? A G 31 ? A G 31 ? 1_555 K ? S K . ? A K 218 ? 1_555 "O3'" ? A U 84 ? A U 84 ? 1_555 76.5 ? 8 OP1 ? A C 30 ? A C 30 ? 1_555 K ? S K . ? A K 218 ? 1_555 "O2'" ? A U 84 ? A U 84 ? 1_555 127.1 ? 9 O6 ? A G 31 ? A G 31 ? 1_555 K ? S K . ? A K 218 ? 1_555 "O2'" ? A U 84 ? A U 84 ? 1_555 73.1 ? 10 "O3'" ? A U 84 ? A U 84 ? 1_555 K ? S K . ? A K 218 ? 1_555 "O2'" ? A U 84 ? A U 84 ? 1_555 4.9 ? 11 OP1 ? A G 48 ? A G 48 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 OP1 ? A C 90 ? A C 90 ? 1_555 71.4 ? 12 OP1 ? A G 48 ? A G 48 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 OP2 ? A C 91 ? A C 91 ? 1_555 78.5 ? 13 OP1 ? A C 90 ? A C 90 ? 1_555 MN ? C MN . ? A MN 202 ? 1_555 OP2 ? A C 91 ? A C 91 ? 1_555 80.5 ? 14 OP2 ? A G 48 ? A G 48 ? 1_555 MN ? D MN . ? A MN 203 ? 1_555 OP1 ? A C 91 ? A C 91 ? 1_555 80.6 ? 15 O6 ? A G 48 ? A G 48 ? 1_555 MN ? L MN . ? A MN 211 ? 1_555 O1P A B PRP . ? A PRP 201 ? 1_555 71.2 ? 16 O2 ? A U 49 ? A U 49 ? 1_555 MN ? H MN . ? A MN 207 ? 1_555 OP2 ? A C 75 ? A C 75 ? 1_555 85.9 ? 17 O2 ? A U 49 ? A U 49 ? 1_555 MN ? H MN . ? A MN 207 ? 1_555 O2P A B PRP . ? A PRP 201 ? 1_555 85.1 ? 18 OP2 ? A C 75 ? A C 75 ? 1_555 MN ? H MN . ? A MN 207 ? 1_555 O2P A B PRP . ? A PRP 201 ? 1_555 92.4 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CCC PC P N S 73 CCC O1C O N N 74 CCC O2C O N N 75 CCC P P N N 76 CCC OP1 O N N 77 CCC OP2 O N N 78 CCC OP3 O N N 79 CCC "O5'" O N N 80 CCC "C5'" C N N 81 CCC "C4'" C N R 82 CCC "O4'" O N N 83 CCC "C3'" C N R 84 CCC "O3'" O N N 85 CCC "C2'" C N R 86 CCC "O2'" O N N 87 CCC "C1'" C N R 88 CCC N1 N N N 89 CCC C2 C N N 90 CCC O2 O N N 91 CCC N3 N N N 92 CCC C4 C N N 93 CCC N4 N N N 94 CCC C5 C N N 95 CCC C6 C N N 96 CCC HOC2 H N N 97 CCC HOP2 H N N 98 CCC HOP3 H N N 99 CCC "H5'" H N N 100 CCC "H5''" H N N 101 CCC "H4'" H N N 102 CCC "H3'" H N N 103 CCC "H2'" H N N 104 CCC "H1'" H N N 105 CCC H41 H N N 106 CCC H42 H N N 107 CCC H5 H N N 108 CCC H6 H N N 109 G OP3 O N N 110 G P P N N 111 G OP1 O N N 112 G OP2 O N N 113 G "O5'" O N N 114 G "C5'" C N N 115 G "C4'" C N R 116 G "O4'" O N N 117 G "C3'" C N S 118 G "O3'" O N N 119 G "C2'" C N R 120 G "O2'" O N N 121 G "C1'" C N R 122 G N9 N Y N 123 G C8 C Y N 124 G N7 N Y N 125 G C5 C Y N 126 G C6 C N N 127 G O6 O N N 128 G N1 N N N 129 G C2 C N N 130 G N2 N N N 131 G N3 N N N 132 G C4 C Y N 133 G HOP3 H N N 134 G HOP2 H N N 135 G "H5'" H N N 136 G "H5''" H N N 137 G "H4'" H N N 138 G "H3'" H N N 139 G "HO3'" H N N 140 G "H2'" H N N 141 G "HO2'" H N N 142 G "H1'" H N N 143 G H8 H N N 144 G H1 H N N 145 G H21 H N N 146 G H22 H N N 147 GTP PG P N N 148 GTP O1G O N N 149 GTP O2G O N N 150 GTP O3G O N N 151 GTP O3B O N N 152 GTP PB P N N 153 GTP O1B O N N 154 GTP O2B O N N 155 GTP O3A O N N 156 GTP PA P N N 157 GTP O1A O N N 158 GTP O2A O N N 159 GTP "O5'" O N N 160 GTP "C5'" C N N 161 GTP "C4'" C N R 162 GTP "O4'" O N N 163 GTP "C3'" C N S 164 GTP "O3'" O N N 165 GTP "C2'" C N R 166 GTP "O2'" O N N 167 GTP "C1'" C N R 168 GTP N9 N Y N 169 GTP C8 C Y N 170 GTP N7 N Y N 171 GTP C5 C Y N 172 GTP C6 C N N 173 GTP O6 O N N 174 GTP N1 N N N 175 GTP C2 C N N 176 GTP N2 N N N 177 GTP N3 N N N 178 GTP C4 C Y N 179 GTP HOG2 H N N 180 GTP HOG3 H N N 181 GTP HOB2 H N N 182 GTP HOA2 H N N 183 GTP "H5'" H N N 184 GTP "H5''" H N N 185 GTP "H4'" H N N 186 GTP "H3'" H N N 187 GTP "HO3'" H N N 188 GTP "H2'" H N N 189 GTP "HO2'" H N N 190 GTP "H1'" H N N 191 GTP H8 H N N 192 GTP HN1 H N N 193 GTP HN21 H N N 194 GTP HN22 H N N 195 HOH O O N N 196 HOH H1 H N N 197 HOH H2 H N N 198 K K K N N 199 MN MN MN N N 200 NA NA NA N N 201 PRP C1 C N R 202 PRP C2 C N R 203 PRP C3 C N S 204 PRP C4 C N R 205 PRP C5 C N N 206 PRP O1 O N N 207 PRP O2 O N N 208 PRP O3 O N N 209 PRP O4 O N N 210 PRP O5 O N N 211 PRP P P N N 212 PRP O1P O N N 213 PRP O2P O N N 214 PRP O3P O N N 215 PRP PA P N R 216 PRP O1A O N N 217 PRP O2A O N N 218 PRP O3A O N N 219 PRP PB P N N 220 PRP O1B O N N 221 PRP O2B O N N 222 PRP O3B O N N 223 PRP H1 H N N 224 PRP H2 H N N 225 PRP H3 H N N 226 PRP H4 H N N 227 PRP H51 H N N 228 PRP H52 H N N 229 PRP HO2 H N N 230 PRP HO3 H N N 231 PRP HOP2 H N N 232 PRP HOP3 H N N 233 PRP HOA2 H N N 234 PRP HOB2 H N N 235 PRP HOB3 H N N 236 U OP3 O N N 237 U P P N N 238 U OP1 O N N 239 U OP2 O N N 240 U "O5'" O N N 241 U "C5'" C N N 242 U "C4'" C N R 243 U "O4'" O N N 244 U "C3'" C N S 245 U "O3'" O N N 246 U "C2'" C N R 247 U "O2'" O N N 248 U "C1'" C N R 249 U N1 N N N 250 U C2 C N N 251 U O2 O N N 252 U N3 N N N 253 U C4 C N N 254 U O4 O N N 255 U C5 C N N 256 U C6 C N N 257 U HOP3 H N N 258 U HOP2 H N N 259 U "H5'" H N N 260 U "H5''" H N N 261 U "H4'" H N N 262 U "H3'" H N N 263 U "HO3'" H N N 264 U "H2'" H N N 265 U "HO2'" H N N 266 U "H1'" H N N 267 U H3 H N N 268 U H5 H N N 269 U H6 H N N 270 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CCC PC O1C doub N N 76 CCC PC O2C sing N N 77 CCC PC "O3'" sing N N 78 CCC PC "O2'" sing N N 79 CCC O2C HOC2 sing N N 80 CCC P OP1 doub N N 81 CCC P OP2 sing N N 82 CCC P OP3 sing N N 83 CCC P "O5'" sing N N 84 CCC OP2 HOP2 sing N N 85 CCC OP3 HOP3 sing N N 86 CCC "O5'" "C5'" sing N N 87 CCC "C5'" "C4'" sing N N 88 CCC "C5'" "H5'" sing N N 89 CCC "C5'" "H5''" sing N N 90 CCC "C4'" "O4'" sing N N 91 CCC "C4'" "C3'" sing N N 92 CCC "C4'" "H4'" sing N N 93 CCC "O4'" "C1'" sing N N 94 CCC "C3'" "O3'" sing N N 95 CCC "C3'" "C2'" sing N N 96 CCC "C3'" "H3'" sing N N 97 CCC "C2'" "O2'" sing N N 98 CCC "C2'" "C1'" sing N N 99 CCC "C2'" "H2'" sing N N 100 CCC "C1'" N1 sing N N 101 CCC "C1'" "H1'" sing N N 102 CCC N1 C2 sing N N 103 CCC N1 C6 sing N N 104 CCC C2 O2 doub N N 105 CCC C2 N3 sing N N 106 CCC N3 C4 doub N N 107 CCC C4 N4 sing N N 108 CCC C4 C5 sing N N 109 CCC N4 H41 sing N N 110 CCC N4 H42 sing N N 111 CCC C5 C6 doub N N 112 CCC C5 H5 sing N N 113 CCC C6 H6 sing N N 114 G OP3 P sing N N 115 G OP3 HOP3 sing N N 116 G P OP1 doub N N 117 G P OP2 sing N N 118 G P "O5'" sing N N 119 G OP2 HOP2 sing N N 120 G "O5'" "C5'" sing N N 121 G "C5'" "C4'" sing N N 122 G "C5'" "H5'" sing N N 123 G "C5'" "H5''" sing N N 124 G "C4'" "O4'" sing N N 125 G "C4'" "C3'" sing N N 126 G "C4'" "H4'" sing N N 127 G "O4'" "C1'" sing N N 128 G "C3'" "O3'" sing N N 129 G "C3'" "C2'" sing N N 130 G "C3'" "H3'" sing N N 131 G "O3'" "HO3'" sing N N 132 G "C2'" "O2'" sing N N 133 G "C2'" "C1'" sing N N 134 G "C2'" "H2'" sing N N 135 G "O2'" "HO2'" sing N N 136 G "C1'" N9 sing N N 137 G "C1'" "H1'" sing N N 138 G N9 C8 sing Y N 139 G N9 C4 sing Y N 140 G C8 N7 doub Y N 141 G C8 H8 sing N N 142 G N7 C5 sing Y N 143 G C5 C6 sing N N 144 G C5 C4 doub Y N 145 G C6 O6 doub N N 146 G C6 N1 sing N N 147 G N1 C2 sing N N 148 G N1 H1 sing N N 149 G C2 N2 sing N N 150 G C2 N3 doub N N 151 G N2 H21 sing N N 152 G N2 H22 sing N N 153 G N3 C4 sing N N 154 GTP PG O1G doub N N 155 GTP PG O2G sing N N 156 GTP PG O3G sing N N 157 GTP PG O3B sing N N 158 GTP O2G HOG2 sing N N 159 GTP O3G HOG3 sing N N 160 GTP O3B PB sing N N 161 GTP PB O1B doub N N 162 GTP PB O2B sing N N 163 GTP PB O3A sing N N 164 GTP O2B HOB2 sing N N 165 GTP O3A PA sing N N 166 GTP PA O1A doub N N 167 GTP PA O2A sing N N 168 GTP PA "O5'" sing N N 169 GTP O2A HOA2 sing N N 170 GTP "O5'" "C5'" sing N N 171 GTP "C5'" "C4'" sing N N 172 GTP "C5'" "H5'" sing N N 173 GTP "C5'" "H5''" sing N N 174 GTP "C4'" "O4'" sing N N 175 GTP "C4'" "C3'" sing N N 176 GTP "C4'" "H4'" sing N N 177 GTP "O4'" "C1'" sing N N 178 GTP "C3'" "O3'" sing N N 179 GTP "C3'" "C2'" sing N N 180 GTP "C3'" "H3'" sing N N 181 GTP "O3'" "HO3'" sing N N 182 GTP "C2'" "O2'" sing N N 183 GTP "C2'" "C1'" sing N N 184 GTP "C2'" "H2'" sing N N 185 GTP "O2'" "HO2'" sing N N 186 GTP "C1'" N9 sing N N 187 GTP "C1'" "H1'" sing N N 188 GTP N9 C8 sing Y N 189 GTP N9 C4 sing Y N 190 GTP C8 N7 doub Y N 191 GTP C8 H8 sing N N 192 GTP N7 C5 sing Y N 193 GTP C5 C6 sing N N 194 GTP C5 C4 doub Y N 195 GTP C6 O6 doub N N 196 GTP C6 N1 sing N N 197 GTP N1 C2 sing N N 198 GTP N1 HN1 sing N N 199 GTP C2 N2 sing N N 200 GTP C2 N3 doub N N 201 GTP N2 HN21 sing N N 202 GTP N2 HN22 sing N N 203 GTP N3 C4 sing N N 204 HOH O H1 sing N N 205 HOH O H2 sing N N 206 PRP C1 C2 sing N N 207 PRP C1 O1 sing N N 208 PRP C1 O4 sing N N 209 PRP C1 H1 sing N N 210 PRP C2 C3 sing N N 211 PRP C2 O2 sing N N 212 PRP C2 H2 sing N N 213 PRP C3 C4 sing N N 214 PRP C3 O3 sing N N 215 PRP C3 H3 sing N N 216 PRP C4 C5 sing N N 217 PRP C4 O4 sing N N 218 PRP C4 H4 sing N N 219 PRP C5 O5 sing N N 220 PRP C5 H51 sing N N 221 PRP C5 H52 sing N N 222 PRP O1 PA sing N N 223 PRP O2 HO2 sing N N 224 PRP O3 HO3 sing N N 225 PRP O5 P sing N N 226 PRP P O1P doub N N 227 PRP P O2P sing N N 228 PRP P O3P sing N N 229 PRP O2P HOP2 sing N N 230 PRP O3P HOP3 sing N N 231 PRP PA O1A doub N N 232 PRP PA O2A sing N N 233 PRP PA O3A sing N N 234 PRP O2A HOA2 sing N N 235 PRP O3A PB sing N N 236 PRP PB O1B doub N N 237 PRP PB O2B sing N N 238 PRP PB O3B sing N N 239 PRP O2B HOB2 sing N N 240 PRP O3B HOB3 sing N N 241 U OP3 P sing N N 242 U OP3 HOP3 sing N N 243 U P OP1 doub N N 244 U P OP2 sing N N 245 U P "O5'" sing N N 246 U OP2 HOP2 sing N N 247 U "O5'" "C5'" sing N N 248 U "C5'" "C4'" sing N N 249 U "C5'" "H5'" sing N N 250 U "C5'" "H5''" sing N N 251 U "C4'" "O4'" sing N N 252 U "C4'" "C3'" sing N N 253 U "C4'" "H4'" sing N N 254 U "O4'" "C1'" sing N N 255 U "C3'" "O3'" sing N N 256 U "C3'" "C2'" sing N N 257 U "C3'" "H3'" sing N N 258 U "O3'" "HO3'" sing N N 259 U "C2'" "O2'" sing N N 260 U "C2'" "C1'" sing N N 261 U "C2'" "H2'" sing N N 262 U "O2'" "HO2'" sing N N 263 U "C1'" N1 sing N N 264 U "C1'" "H1'" sing N N 265 U N1 C2 sing N N 266 U N1 C6 sing N N 267 U C2 O2 doub N N 268 U C2 N3 sing N N 269 U N3 C4 sing N N 270 U N3 H3 sing N N 271 U C4 O4 doub N N 272 U C4 C5 sing N N 273 U C5 C6 doub N N 274 U C5 H5 sing N N 275 U C6 H6 sing N N 276 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6DLQ 'double helix' 6DLQ 'a-form double helix' 6DLQ 'hairpin loop' 6DLQ tetraloop 6DLQ 'bulge loop' 6DLQ 'mismatched base pair' 6DLQ 'quadruple helix' 6DLQ 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A CCC 107 1_555 -0.627 0.147 0.374 5.901 1.815 -6.743 1 A_G2:CCC107_A A 2 ? A 107 ? 19 1 1 A A 3 1_555 A U 106 1_555 -0.180 0.123 0.265 1.687 -7.908 -1.526 2 A_A3:U106_A A 3 ? A 106 ? 20 1 1 A A 4 1_555 A U 105 1_555 0.272 0.008 0.253 6.632 -25.159 -1.114 3 A_A4:U105_A A 4 ? A 105 ? 20 1 1 A A 5 1_555 A U 104 1_555 0.021 -0.035 0.328 -2.299 -28.315 5.167 4 A_A5:U104_A A 5 ? A 104 ? 20 1 1 A A 72 1_555 A G 6 1_555 -3.401 3.712 -0.732 30.443 4.813 70.212 5 A_A72:G6_A A 72 ? A 6 ? 10 6 1 A C 73 1_555 A G 94 1_555 -0.055 -0.156 0.017 24.623 -33.646 -5.174 6 A_C73:G94_A A 73 ? A 94 ? 19 1 1 A A 74 1_555 A G 48 1_555 2.976 7.173 -1.183 47.784 6.962 156.900 7 A_A74:G48_A A 74 ? A 48 ? ? 12 1 A G 31 1_555 A U 28 1_555 -0.736 4.741 -0.167 7.566 16.247 114.248 8 A_G31:U28_A A 31 ? A 28 ? ? 6 1 A G 32 1_555 A C 27 1_555 -0.449 -0.540 -0.352 -1.064 -10.087 -1.813 9 A_G32:C27_A A 32 ? A 27 ? 19 1 1 A C 33 1_555 A G 26 1_555 0.325 -0.338 -0.370 2.136 -8.848 -9.756 10 A_C33:G26_A A 33 ? A 26 ? 19 1 1 A A 34 1_555 A U 25 1_555 -0.401 -0.247 0.253 0.864 -9.318 -0.471 11 A_A34:U25_A A 34 ? A 25 ? 20 1 1 A C 35 1_555 A G 24 1_555 0.399 -0.213 -0.095 3.110 -12.407 -6.287 12 A_C35:G24_A A 35 ? A 24 ? 19 1 1 A G 36 1_555 A C 23 1_555 0.360 -0.078 0.011 -7.404 -17.287 -5.997 13 A_G36:C23_A A 36 ? A 23 ? 19 1 1 A C 39 1_555 A G 22 1_555 0.179 0.035 -0.081 -5.659 -6.880 8.281 14 A_C39:G22_A A 39 ? A 22 ? 19 1 1 A G 41 1_555 A C 21 1_555 -0.359 -0.053 -0.421 4.527 -8.131 0.455 15 A_G41:C21_A A 41 ? A 21 ? 19 1 1 A G 42 1_555 A C 20 1_555 -0.153 -0.180 -0.780 -11.318 4.845 -2.026 16 A_G42:C20_A A 42 ? A 20 ? 19 1 1 A U 43 1_555 A U 19 1_555 2.394 -1.112 -1.221 -10.495 -8.746 -16.337 17 A_U43:U19_A A 43 ? A 19 ? ? ? 1 A G 17 1_555 A A 85 1_555 3.694 4.128 1.125 -23.960 -53.808 93.186 18 A_G17:A85_A A 17 ? A 85 ? ? ? 1 A C 44 1_555 A G 16 1_555 -0.217 -0.029 -0.693 21.822 -24.604 0.003 19 A_C44:G16_A A 44 ? A 16 ? 19 1 1 A C 45 1_555 A G 15 1_555 0.070 -0.327 0.071 8.863 -7.959 -2.360 20 A_C45:G15_A A 45 ? A 15 ? 19 1 1 A A 46 1_555 A A 14 1_555 6.636 -4.475 -0.064 1.704 -12.760 -24.322 21 A_A46:A14_A A 46 ? A 14 ? ? 10 1 A A 47 1_555 A U 13 1_555 -4.494 -2.339 -0.352 7.951 -7.194 -89.584 22 A_A47:U13_A A 47 ? A 13 ? 24 4 1 A G 50 1_555 A C 12 1_555 -0.099 0.090 -0.391 -4.255 -5.524 3.396 23 A_G50:C12_A A 50 ? A 12 ? 19 1 1 A A 51 1_555 A U 11 1_555 -0.422 -0.139 -0.138 -6.099 -8.022 2.785 24 A_A51:U11_A A 51 ? A 11 ? 20 1 1 A C 52 1_555 A G 10 1_555 0.464 -0.140 0.049 1.966 -6.568 -1.047 25 A_C52:G10_A A 52 ? A 10 ? 19 1 1 A A 53 1_555 A U 9 1_555 0.003 -0.242 -0.003 -4.836 -3.818 -3.766 26 A_A53:U9_A A 53 ? A 9 ? 20 1 1 A C 54 1_555 A G 8 1_555 0.411 -0.272 -0.130 1.972 -2.871 1.693 27 A_C54:G8_A A 54 ? A 8 ? 19 1 1 A A 55 1_555 A U 7 1_555 -0.094 0.184 0.160 3.925 -1.422 6.383 28 A_A55:U7_A A 55 ? A 7 ? 20 1 1 A G 56 1_555 A U 71 1_555 -2.482 -0.668 0.032 0.610 -4.403 -7.236 29 A_G56:U71_A A 56 ? A 71 ? 28 1 1 A A 57 1_555 A U 70 1_555 -0.093 -0.297 -0.041 3.532 -21.518 1.929 30 A_A57:U70_A A 57 ? A 70 ? 20 1 1 A C 58 1_555 A G 69 1_555 0.150 -0.217 -0.250 6.627 -20.776 -2.095 31 A_C58:G69_A A 58 ? A 69 ? 19 1 1 A G 59 1_555 A C 68 1_555 0.071 0.146 -0.158 -6.267 -11.628 -3.351 32 A_G59:C68_A A 59 ? A 68 ? 19 1 1 A C 60 1_555 A G 67 1_555 0.232 0.235 -0.143 6.102 -8.292 -1.638 33 A_C60:G67_A A 60 ? A 67 ? 19 1 1 A A 61 1_555 A U 66 1_555 0.266 0.115 0.073 2.779 -7.614 0.534 34 A_A61:U66_A A 61 ? A 66 ? 20 1 1 A U 62 1_555 A G 65 1_555 -0.235 -6.507 -0.090 -10.239 4.629 -120.054 35 A_U62:G65_A A 62 ? A 65 ? ? 6 1 A A 87 1_555 A U 84 1_555 -4.461 -2.165 -1.174 -26.718 -13.695 -95.988 36 A_A87:U84_A A 87 ? A 84 ? 24 4 1 A A 88 1_555 A A 83 1_555 -5.155 -0.107 -0.009 5.055 -3.668 -90.747 37 A_A88:A83_A A 88 ? A 83 ? ? ? 1 A C 90 1_555 A G 82 1_555 -0.486 -0.308 0.044 20.049 -14.108 -5.408 38 A_C90:G82_A A 90 ? A 82 ? 19 1 1 A C 91 1_555 A G 81 1_555 0.249 -0.277 -0.057 3.931 -14.418 3.604 39 A_C91:G81_A A 91 ? A 81 ? 19 1 1 A C 92 1_555 A G 80 1_555 0.419 -0.296 0.066 3.786 -4.817 -0.104 40 A_C92:G80_A A 92 ? A 80 ? 19 1 1 A A 93 1_555 A A 79 1_555 -1.376 -1.632 0.248 11.136 -12.400 176.463 41 A_A93:A79_A A 93 ? A 79 ? 1 2 1 A G 95 1_555 A G 78 1_555 3.633 1.020 -0.320 16.980 -9.366 -66.359 42 A_G95:G78_A A 95 ? A 78 ? ? 1 1 A C 96 1_555 A G 77 1_555 -0.343 -0.208 -0.056 13.727 -17.232 -4.003 43 A_C96:G77_A A 96 ? A 77 ? 19 1 1 A G 97 1_555 A C 76 1_555 0.197 -0.181 0.303 1.844 -14.868 3.591 44 A_G97:C76_A A 97 ? A 76 ? 19 1 1 A G 98 1_555 A C 75 1_555 0.239 0.019 -0.231 -19.720 -22.305 0.812 45 A_G98:C75_A A 98 ? A 75 ? 19 1 1 A G 99 1_555 A A 101 1_555 7.554 3.366 0.257 -60.048 1.101 21.009 46 A_G99:A101_A A 99 ? A 101 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A CCC 107 1_555 A A 3 1_555 A U 106 1_555 0.364 -1.594 3.250 -1.034 15.499 36.654 -3.975 -0.645 2.399 23.398 1.561 39.705 1 AA_G2A3:U106CCC107_AA A 2 ? A 107 ? A 3 ? A 106 ? 1 A A 3 1_555 A U 106 1_555 A A 4 1_555 A U 105 1_555 0.307 -1.076 3.050 1.808 8.063 38.156 -2.491 -0.262 2.786 12.160 -2.727 39.008 2 AA_A3A4:U105U106_AA A 3 ? A 106 ? A 4 ? A 105 ? 1 A A 4 1_555 A U 105 1_555 A A 5 1_555 A U 104 1_555 0.295 -1.818 3.279 -1.151 10.158 28.885 -5.272 -0.766 2.497 19.606 2.222 30.604 3 AA_A4A5:U104U105_AA A 4 ? A 105 ? A 5 ? A 104 ? 1 A A 5 1_555 A U 104 1_555 A A 72 1_555 A G 6 1_555 0.279 -0.315 3.592 11.093 3.475 97.138 -0.273 0.018 3.593 2.311 -7.378 97.657 4 AA_A5A72:G6U104_AA A 5 ? A 104 ? A 72 ? A 6 ? 1 A A 72 1_555 A G 6 1_555 A C 73 1_555 A G 94 1_555 1.389 0.972 2.441 4.008 -6.607 82.119 0.860 -0.980 2.426 -5.019 -3.045 82.418 5 AA_A72C73:G94G6_AA A 72 ? A 6 ? A 73 ? A 94 ? 1 A C 73 1_555 A G 94 1_555 A A 74 1_555 A G 48 1_555 -0.088 -2.537 4.757 -9.751 1.945 -24.299 4.813 -4.097 4.566 -4.393 -22.023 -26.226 6 AA_C73A74:G48G94_AA A 73 ? A 94 ? A 74 ? A 48 ? 1 A G 31 1_555 A U 28 1_555 A G 32 1_555 A C 27 1_555 1.782 2.971 1.174 -116.650 129.800 -165.157 -1.539 0.843 1.033 -64.917 -58.340 -179.292 7 AA_G31G32:C27U28_AA A 31 ? A 28 ? A 32 ? A 27 ? 1 A G 32 1_555 A C 27 1_555 A C 33 1_555 A G 26 1_555 -0.625 -1.847 3.244 -0.596 2.597 37.920 -3.157 0.886 3.124 3.991 0.917 38.010 8 AA_G32C33:G26C27_AA A 32 ? A 27 ? A 33 ? A 26 ? 1 A C 33 1_555 A G 26 1_555 A A 34 1_555 A U 25 1_555 -0.221 -1.713 3.178 -4.851 17.038 27.650 -5.501 -0.309 1.852 31.845 9.066 32.745 9 AA_C33A34:U25G26_AA A 33 ? A 26 ? A 34 ? A 25 ? 1 A A 34 1_555 A U 25 1_555 A C 35 1_555 A G 24 1_555 -0.136 -1.600 3.232 2.616 8.979 35.979 -3.627 0.539 2.752 14.243 -4.149 37.136 10 AA_A34C35:G24U25_AA A 34 ? A 25 ? A 35 ? A 24 ? 1 A C 35 1_555 A G 24 1_555 A G 36 1_555 A C 23 1_555 0.494 -1.959 3.287 3.397 18.023 32.232 -5.197 -0.382 1.992 29.659 -5.590 36.964 11 AA_C35G36:C23G24_AA A 35 ? A 24 ? A 36 ? A 23 ? 1 A G 36 1_555 A C 23 1_555 A C 39 1_555 A G 22 1_555 -1.353 -1.270 3.034 1.679 7.509 52.925 -1.837 1.600 2.802 8.375 -1.872 53.441 12 AA_G36C39:G22C23_AA A 36 ? A 23 ? A 39 ? A 22 ? 1 A C 39 1_555 A G 22 1_555 A G 41 1_555 A C 21 1_555 -2.608 -1.152 3.348 10.537 8.681 45.361 -2.081 4.034 2.470 10.966 -13.312 47.267 13 AA_C39G41:C21G22_AA A 39 ? A 22 ? A 41 ? A 21 ? 1 A G 41 1_555 A C 21 1_555 A G 42 1_555 A C 20 1_555 -1.027 -1.887 3.490 -2.852 12.708 38.824 -4.088 1.159 2.827 18.495 4.151 40.870 14 AA_G41G42:C20C21_AA A 41 ? A 21 ? A 42 ? A 20 ? 1 A G 42 1_555 A C 20 1_555 A U 43 1_555 A U 19 1_555 -0.686 -2.109 3.532 5.498 9.279 38.682 -4.129 1.625 2.852 13.687 -8.110 40.102 15 AA_G42U43:U19C20_AA A 42 ? A 20 ? A 43 ? A 19 ? 1 A U 43 1_555 A U 19 1_555 A G 17 1_555 A A 85 1_555 -0.677 -3.921 -1.519 -115.385 -111.299 159.391 -2.037 0.417 -0.929 -55.758 57.805 176.496 16 AA_U43G17:A85U19_AA A 43 ? A 19 ? A 17 ? A 85 ? 1 A G 17 1_555 A A 85 1_555 A C 44 1_555 A G 16 1_555 4.478 -1.393 1.007 152.629 42.075 82.267 -0.983 -1.251 3.619 22.010 -79.843 163.715 17 AA_G17C44:G16A85_AA A 17 ? A 85 ? A 44 ? A 16 ? 1 A C 44 1_555 A G 16 1_555 A C 45 1_555 A G 15 1_555 -0.471 -2.017 3.514 -9.646 15.874 38.034 -4.407 -0.320 2.555 22.775 13.840 42.176 18 AA_C44C45:G15G16_AA A 44 ? A 16 ? A 45 ? A 15 ? 1 A C 45 1_555 A G 15 1_555 A A 46 1_555 A A 14 1_555 -2.323 -1.563 3.576 0.550 7.630 56.950 -2.067 2.450 3.339 7.962 -0.574 57.419 19 AA_C45A46:A14G15_AA A 45 ? A 15 ? A 46 ? A 14 ? 1 A A 46 1_555 A A 14 1_555 A A 47 1_555 A U 13 1_555 -3.830 -0.206 3.269 1.006 3.280 -7.992 -7.436 -22.562 3.524 -22.236 6.816 -8.697 20 AA_A46A47:U13A14_AA A 46 ? A 14 ? A 47 ? A 13 ? 1 A A 47 1_555 A U 13 1_555 A G 50 1_555 A C 12 1_555 2.733 -2.326 3.771 -1.271 4.436 76.730 -2.017 -2.240 3.614 3.570 1.023 76.847 21 AA_A47G50:C12U13_AA A 47 ? A 13 ? A 50 ? A 12 ? 1 A G 50 1_555 A C 12 1_555 A A 51 1_555 A U 11 1_555 -0.600 -2.367 3.223 -2.376 9.328 28.536 -6.245 0.727 2.388 18.279 4.656 30.083 22 AA_G50A51:U11C12_AA A 50 ? A 12 ? A 51 ? A 11 ? 1 A A 51 1_555 A U 11 1_555 A C 52 1_555 A G 10 1_555 -0.137 -1.392 3.003 -0.224 4.537 34.682 -2.926 0.199 2.805 7.570 0.373 34.969 23 AA_A51C52:G10U11_AA A 51 ? A 11 ? A 52 ? A 10 ? 1 A C 52 1_555 A G 10 1_555 A A 53 1_555 A U 9 1_555 0.169 -1.915 3.214 2.181 10.275 29.840 -5.214 0.050 2.442 19.219 -4.080 31.595 24 AA_C52A53:U9G10_AA A 52 ? A 10 ? A 53 ? A 9 ? 1 A A 53 1_555 A U 9 1_555 A C 54 1_555 A G 8 1_555 0.455 -1.548 3.178 1.753 0.963 32.487 -2.925 -0.516 3.151 1.719 -3.129 32.547 25 AA_A53C54:G8U9_AA A 53 ? A 9 ? A 54 ? A 8 ? 1 A C 54 1_555 A G 8 1_555 A A 55 1_555 A U 7 1_555 0.545 -2.069 3.198 -3.570 2.695 27.286 -4.944 -1.952 2.890 5.664 7.504 27.643 26 AA_C54A55:U7G8_AA A 54 ? A 8 ? A 55 ? A 7 ? 1 A A 55 1_555 A U 7 1_555 A G 56 1_555 A U 71 1_555 2.609 -0.736 3.573 -1.607 -3.271 51.663 -0.603 -3.105 3.533 -3.748 1.841 51.783 27 AA_A55G56:U71U7_AA A 55 ? A 7 ? A 56 ? A 71 ? 1 A G 56 1_555 A U 71 1_555 A A 57 1_555 A U 70 1_555 -0.050 -1.319 3.237 -5.310 9.201 40.874 -2.734 -0.450 2.872 12.914 7.453 42.175 28 AA_G56A57:U70U71_AA A 56 ? A 71 ? A 57 ? A 70 ? 1 A A 57 1_555 A U 70 1_555 A C 58 1_555 A G 69 1_555 -0.242 -1.463 3.053 0.445 5.469 35.713 -3.056 0.447 2.803 8.854 -0.720 36.118 29 AA_A57C58:G69U70_AA A 57 ? A 70 ? A 58 ? A 69 ? 1 A C 58 1_555 A G 69 1_555 A G 59 1_555 A C 68 1_555 -0.253 -1.559 3.609 -1.382 12.199 29.675 -5.054 0.206 2.777 22.636 2.565 32.062 30 AA_C58G59:C68G69_AA A 58 ? A 69 ? A 59 ? A 68 ? 1 A G 59 1_555 A C 68 1_555 A C 60 1_555 A G 67 1_555 0.105 -1.262 2.897 -0.684 2.226 33.792 -2.480 -0.277 2.808 3.824 1.174 33.870 31 AA_G59C60:G67C68_AA A 59 ? A 68 ? A 60 ? A 67 ? 1 A C 60 1_555 A G 67 1_555 A A 61 1_555 A U 66 1_555 0.747 -1.583 3.395 2.187 3.584 31.652 -3.540 -0.953 3.244 6.534 -3.988 31.923 32 AA_C60A61:U66G67_AA A 60 ? A 67 ? A 61 ? A 66 ? 1 A A 61 1_555 A U 66 1_555 A U 62 1_555 A G 65 1_555 -1.085 -0.692 3.879 12.462 5.393 102.945 -0.531 0.899 3.743 3.437 -7.942 103.583 33 AA_A61U62:G65U66_AA A 61 ? A 66 ? A 62 ? A 65 ? 1 A A 87 1_555 A U 84 1_555 A A 88 1_555 A A 83 1_555 -1.043 -0.028 2.507 -9.630 -5.268 26.408 0.930 0.308 2.672 -10.949 20.016 28.561 34 AA_A87A88:A83U84_AA A 87 ? A 84 ? A 88 ? A 83 ? 1 A A 88 1_555 A A 83 1_555 A C 90 1_555 A G 82 1_555 3.126 -1.965 3.000 -0.629 -5.696 68.746 -1.540 -2.783 3.109 -5.036 0.556 68.955 35 AA_A88C90:G82A83_AA A 88 ? A 83 ? A 90 ? A 82 ? 1 A C 90 1_555 A G 82 1_555 A C 91 1_555 A G 81 1_555 0.225 -1.831 3.513 -1.330 7.661 41.934 -3.311 -0.447 3.138 10.595 1.840 42.617 36 AA_C90C91:G81G82_AA A 90 ? A 82 ? A 91 ? A 81 ? 1 A C 91 1_555 A G 81 1_555 A C 92 1_555 A G 80 1_555 -0.235 -1.979 3.201 2.549 8.031 29.781 -5.110 0.884 2.564 15.245 -4.838 30.924 37 AA_C91C92:G80G81_AA A 91 ? A 81 ? A 92 ? A 80 ? 1 A C 92 1_555 A G 80 1_555 A A 93 1_555 A A 79 1_555 -0.454 -3.435 1.450 -142.947 94.576 -79.179 1.260 -0.923 2.093 -48.147 -72.772 -173.376 38 AA_C92A93:A79G80_AA A 92 ? A 80 ? A 93 ? A 79 ? 1 A A 93 1_555 A A 79 1_555 A G 95 1_555 A G 78 1_555 -1.735 -3.193 -0.173 107.580 -134.999 129.146 -1.573 0.887 0.451 -67.779 -54.012 176.834 39 AA_A93G95:G78A79_AA A 93 ? A 79 ? A 95 ? A 78 ? 1 A G 95 1_555 A G 78 1_555 A C 96 1_555 A G 77 1_555 2.499 -2.488 3.137 -3.849 2.711 22.424 -7.083 -7.454 2.367 6.875 9.760 22.907 40 AA_G95C96:G77G78_AA A 95 ? A 78 ? A 96 ? A 77 ? 1 A C 96 1_555 A G 77 1_555 A G 97 1_555 A C 76 1_555 0.208 -1.761 3.461 -5.841 9.868 36.941 -3.864 -1.027 2.851 15.132 8.956 38.620 41 AA_C96G97:C76G77_AA A 96 ? A 77 ? A 97 ? A 76 ? 1 A G 97 1_555 A C 76 1_555 A G 98 1_555 A C 75 1_555 0.219 -2.285 3.650 5.953 10.584 31.854 -5.618 0.590 2.767 18.467 -10.387 34.034 42 AA_G97G98:C75C76_AA A 97 ? A 76 ? A 98 ? A 75 ? 1 A G 98 1_555 A C 75 1_555 A G 99 1_555 A A 101 1_555 -0.246 -2.332 3.279 15.608 9.187 44.755 -3.533 1.443 2.565 11.523 -19.577 48.106 43 AA_G98G99:A101C75_AA A 98 ? A 75 ? A 99 ? A 101 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R01GM112940 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' F31GM119357 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' T32GM88118 3 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id PRP _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id PRP _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 6DLQ _atom_sites.fract_transf_matrix[1][1] 0.011720 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007472 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011049 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016139 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K MN N NA O P # loop_