HEADER DE NOVO PROTEIN 04-JUN-18 6DM9 TITLE DHD15_EXTENDED COMPND MOL_ID: 1; COMPND 2 MOLECULE: DHD15_EXTENDED_A; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DHD15_EXTENDED_B; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPUTATIONAL DESIGN, HETERODIMER, COILED-COIL, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.BICK,Z.CHEN,D.BAKER REVDAT 5 03-APR-24 6DM9 1 REMARK REVDAT 4 20-NOV-19 6DM9 1 REMARK REVDAT 3 16-JAN-19 6DM9 1 JRNL REVDAT 2 02-JAN-19 6DM9 1 JRNL REVDAT 1 19-DEC-18 6DM9 0 JRNL AUTH Z.CHEN,S.E.BOYKEN,M.JIA,F.BUSCH,D.FLORES-SOLIS,M.J.BICK, JRNL AUTH 2 P.LU,Z.L.VANAERNUM,A.SAHASRABUDDHE,R.A.LANGAN,S.BERMEO, JRNL AUTH 3 T.J.BRUNETTE,V.K.MULLIGAN,L.P.CARTER,F.DIMAIO,N.G.SGOURAKIS, JRNL AUTH 4 V.H.WYSOCKI,D.BAKER JRNL TITL PROGRAMMABLE DESIGN OF ORTHOGONAL PROTEIN HETERODIMERS. JRNL REF NATURE V. 565 106 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 30568301 JRNL DOI 10.1038/S41586-018-0802-Y REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3084: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 14150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0304 - 4.3030 0.98 2082 164 0.2462 0.2996 REMARK 3 2 4.3030 - 3.4159 0.99 1975 157 0.2194 0.2706 REMARK 3 3 3.4159 - 2.9842 0.99 1947 155 0.2789 0.3182 REMARK 3 4 2.9842 - 2.7114 0.96 1887 148 0.2997 0.3591 REMARK 3 5 2.7114 - 2.5171 0.95 1818 144 0.3125 0.3552 REMARK 3 6 2.5171 - 2.3687 0.93 1821 134 0.3077 0.3552 REMARK 3 7 2.3687 - 2.2501 0.82 1587 131 0.3171 0.3555 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2454 REMARK 3 ANGLE : 0.411 3267 REMARK 3 CHIRALITY : 0.025 385 REMARK 3 PLANARITY : 0.001 422 REMARK 3 DIHEDRAL : 16.034 1601 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 78 THROUGH 151) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9283 39.6853 61.2390 REMARK 3 T TENSOR REMARK 3 T11: 0.4358 T22: 0.4365 REMARK 3 T33: 0.3831 T12: 0.0569 REMARK 3 T13: -0.0072 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.0434 L22: 0.1876 REMARK 3 L33: 0.6199 L12: 0.2880 REMARK 3 L13: -0.2242 L23: 0.1674 REMARK 3 S TENSOR REMARK 3 S11: -0.0868 S12: 0.0735 S13: 0.0772 REMARK 3 S21: 0.0172 S22: -0.2282 S23: 0.0600 REMARK 3 S31: -0.2450 S32: -0.1410 S33: -0.0371 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 0 THROUGH 77) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8012 30.7311 62.1054 REMARK 3 T TENSOR REMARK 3 T11: 0.4147 T22: 0.2884 REMARK 3 T33: 0.3583 T12: -0.0010 REMARK 3 T13: 0.0096 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 0.1943 L22: 0.3321 REMARK 3 L33: 2.3622 L12: 0.1146 REMARK 3 L13: 0.4052 L23: 0.4822 REMARK 3 S TENSOR REMARK 3 S11: -0.1008 S12: -0.0713 S13: -0.0776 REMARK 3 S21: 0.0512 S22: -0.2789 S23: -0.0260 REMARK 3 S31: 0.8648 S32: 0.3402 S33: -0.0395 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 78 THROUGH 152) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9530 36.2987 65.9131 REMARK 3 T TENSOR REMARK 3 T11: 0.3365 T22: 0.4925 REMARK 3 T33: 0.3703 T12: -0.0200 REMARK 3 T13: -0.0049 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: -0.1006 L22: 0.5706 REMARK 3 L33: 2.1778 L12: 0.0125 REMARK 3 L13: -0.4110 L23: 0.1426 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: -0.0255 S13: -0.0387 REMARK 3 S21: 0.1214 S22: -0.2135 S23: -0.0858 REMARK 3 S31: -0.5348 S32: 0.9171 S33: 0.0119 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 0 THROUGH 77) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2214 33.8280 65.1559 REMARK 3 T TENSOR REMARK 3 T11: 0.3368 T22: 0.4689 REMARK 3 T33: 0.3843 T12: -0.0879 REMARK 3 T13: -0.0001 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 0.1548 L22: 0.5115 REMARK 3 L33: 1.6562 L12: -0.0739 REMARK 3 L13: 0.1670 L23: 0.0221 REMARK 3 S TENSOR REMARK 3 S11: 0.0538 S12: -0.0592 S13: -0.0235 REMARK 3 S21: -0.1098 S22: -0.1850 S23: 0.0002 REMARK 3 S31: 0.3064 S32: -0.5664 S33: 0.0030 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ITERATIVE ROUNDS OF MANUAL MODEL REMARK 3 BUILDING IN COOT AND REFINEMENT WITH PHENIX REFINE. ULTIMATELY, REMARK 3 RESOLUTION WAS TRIMMED TO 2.25 FROM THE HIGH OF THE 1.83 REMARK 3 DIFFRACTION DATA, AS THE HIGH RESOLUTION DATA, AS EVIDENCED BY REMARK 3 THE REFINEMENT R-FACTORS, WAS DEEMED TOO WEAK TO BE USEFUL. REMARK 4 REMARK 4 6DM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) AND REMARK 200 MULTILAYER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JUNE 17, 2015 REMARK 200 DATA SCALING SOFTWARE : XDS JUNE 17, 2015 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27334 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 46.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 2.74700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2. REMARK 200 STARTING MODEL: COMPUTATIONAL DESIGN MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M BIS-TRIS REMARK 280 PH 6.5, 18% (V/V) PEG 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 13.92700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.66650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.36950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.66650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 13.92700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.36950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 77 REMARK 465 GLU B 153 REMARK 465 GLU B 154 REMARK 465 GLY D 77 REMARK 465 LYS D 152 REMARK 465 GLU D 153 REMARK 465 GLU D 154 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 GLU A 18 CD OE1 OE2 REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 GLU A 35 CD OE1 OE2 REMARK 470 LYS A 46 CD CE NZ REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 61 CD NE CZ NH1 NH2 REMARK 470 LYS A 67 CE NZ REMARK 470 GLU A 75 CD OE1 OE2 REMARK 470 THR B 78 OG1 CG2 REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 GLU B 84 CD OE1 OE2 REMARK 470 ARG B 85 CZ NH1 NH2 REMARK 470 ARG B 87 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 88 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 106 CZ NH1 NH2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 LYS B 113 CD CE NZ REMARK 470 GLU B 119 CD OE1 OE2 REMARK 470 LYS B 127 CE NZ REMARK 470 TYR B 151 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 ARG C 7 CD NE CZ NH1 NH2 REMARK 470 GLU C 11 CD OE1 OE2 REMARK 470 ARG C 21 CD NE CZ NH1 NH2 REMARK 470 LEU C 24 CG CD1 CD2 REMARK 470 LYS C 29 CD CE NZ REMARK 470 LYS C 67 CD CE NZ REMARK 470 ARG D 80 CD NE CZ NH1 NH2 REMARK 470 LYS D 81 CG CD CE NZ REMARK 470 ARG D 85 CZ NH1 NH2 REMARK 470 ARG D 88 CD NE CZ NH1 NH2 REMARK 470 LYS D 94 CE NZ REMARK 470 ARG D 95 NE CZ NH1 NH2 REMARK 470 ARG D 105 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 109 CD CE NZ REMARK 470 LYS D 112 CG CD CE NZ REMARK 470 LYS D 120 CG CD CE NZ REMARK 470 ARG D 140 CD NE CZ NH1 NH2 REMARK 470 TYR D 151 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 108 O HOH B 301 2.17 REMARK 500 NH2 ARG B 115 OE1 GLU D 119 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ2 LYS D 108 OE2 GLU D 148 2664 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide FME C 0 and THR C 1 DBREF 6DM9 A 0 77 PDB 6DM9 6DM9 0 77 DBREF 6DM9 B 77 154 PDB 6DM9 6DM9 77 154 DBREF 6DM9 C 0 77 PDB 6DM9 6DM9 0 77 DBREF 6DM9 D 77 154 PDB 6DM9 6DM9 77 154 SEQRES 1 A 78 FME THR ARG GLU GLU LEU LEU ARG GLU ASN ILE GLU LEU SEQRES 2 A 78 ALA LYS GLU HIS ILE GLU ILE MET ARG GLU ILE LEU GLU SEQRES 3 A 78 LEU LEU GLN LYS MET GLU GLU LEU LEU GLU LYS ALA ARG SEQRES 4 A 78 GLY ALA ASP GLU ASP VAL ALA LYS THR ILE LYS GLU LEU SEQRES 5 A 78 LEU ARG ARG LEU LYS GLU ILE ILE GLU ARG ASN GLN ARG SEQRES 6 A 78 ILE ALA LYS GLU HIS GLU TYR ILE ALA ARG GLU ARG SER SEQRES 1 B 78 GLY THR GLU ARG LYS LEU LEU GLU ARG SER ARG ARG LEU SEQRES 2 B 78 GLN GLU GLU SER LYS ARG LEU LEU ASP GLU MET ALA GLU SEQRES 3 B 78 ILE MET ARG ARG ILE LYS LYS LEU LEU LYS LYS ALA ARG SEQRES 4 B 78 GLY ALA ASP GLU LYS VAL LEU ASP GLU LEU ARG LYS ILE SEQRES 5 B 78 ILE GLU ARG ILE ARG GLU LEU LEU ASP ARG SER ARG LYS SEQRES 6 B 78 ILE HIS GLU ARG SER GLU GLU ILE ALA TYR LYS GLU GLU SEQRES 1 C 78 FME THR ARG GLU GLU LEU LEU ARG GLU ASN ILE GLU LEU SEQRES 2 C 78 ALA LYS GLU HIS ILE GLU ILE MET ARG GLU ILE LEU GLU SEQRES 3 C 78 LEU LEU GLN LYS MET GLU GLU LEU LEU GLU LYS ALA ARG SEQRES 4 C 78 GLY ALA ASP GLU ASP VAL ALA LYS THR ILE LYS GLU LEU SEQRES 5 C 78 LEU ARG ARG LEU LYS GLU ILE ILE GLU ARG ASN GLN ARG SEQRES 6 C 78 ILE ALA LYS GLU HIS GLU TYR ILE ALA ARG GLU ARG SER SEQRES 1 D 78 GLY THR GLU ARG LYS LEU LEU GLU ARG SER ARG ARG LEU SEQRES 2 D 78 GLN GLU GLU SER LYS ARG LEU LEU ASP GLU MET ALA GLU SEQRES 3 D 78 ILE MET ARG ARG ILE LYS LYS LEU LEU LYS LYS ALA ARG SEQRES 4 D 78 GLY ALA ASP GLU LYS VAL LEU ASP GLU LEU ARG LYS ILE SEQRES 5 D 78 ILE GLU ARG ILE ARG GLU LEU LEU ASP ARG SER ARG LYS SEQRES 6 D 78 ILE HIS GLU ARG SER GLU GLU ILE ALA TYR LYS GLU GLU HET FME A 0 20 HET FME C 0 20 HET SO4 B 201 5 HETNAM FME N-FORMYLMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 FME 2(C6 H11 N O3 S) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *30(H2 O) HELIX 1 AA1 THR A 1 ARG A 76 1 76 HELIX 2 AA2 GLU B 79 LYS B 152 1 74 HELIX 3 AA3 THR C 1 SER C 77 1 77 HELIX 4 AA4 GLU D 79 ALA D 150 1 72 LINK C FME A 0 N THR A 1 1555 1555 1.33 LINK C FME C 0 N THR C 1 1555 1555 1.33 SITE 1 AC1 3 ARG B 133 ALA D 101 LYS D 141 SITE 1 AC2 7 ASP B 123 ARG C 2 GLU C 3 GLU C 4 SITE 2 AC2 7 LEU C 5 GLU C 8 ARG D 115 CRYST1 27.854 92.739 115.333 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035901 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010783 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008671 0.00000 HETATM 1 N FME A 0 24.785 44.517 11.064 1.00 88.59 N ANISOU 1 N FME A 0 11667 12090 9905 -1206 -806 782 N HETATM 2 CN FME A 0 25.305 45.158 9.966 1.00 97.37 C ANISOU 2 CN FME A 0 12811 13312 10872 -1375 -844 839 C HETATM 3 O1 FME A 0 25.898 44.558 9.056 1.00100.88 O ANISOU 3 O1 FME A 0 13214 13906 11210 -1312 -723 866 O HETATM 4 CA FME A 0 24.879 43.097 11.266 1.00 78.55 C ANISOU 4 CA FME A 0 10328 10851 8668 -946 -629 753 C HETATM 5 CB FME A 0 24.311 42.670 12.634 1.00 76.90 C ANISOU 5 CB FME A 0 10096 10515 8606 -823 -623 703 C HETATM 6 CG FME A 0 25.437 42.416 13.600 1.00 76.70 C ANISOU 6 CG FME A 0 9870 10754 8519 -756 -535 806 C HETATM 7 SD FME A 0 24.743 42.160 15.210 1.00 75.53 S ANISOU 7 SD FME A 0 9713 10448 8537 -662 -559 753 S HETATM 8 CE FME A 0 25.710 40.828 15.774 1.00 74.67 C ANISOU 8 CE FME A 0 9452 10550 8369 -406 -360 809 C HETATM 9 C FME A 0 24.157 42.291 10.192 1.00 67.90 C ANISOU 9 C FME A 0 9120 9330 7349 -827 -567 657 C HETATM 10 O FME A 0 23.047 42.583 9.745 1.00 63.70 O ANISOU 10 O FME A 0 8755 8546 6902 -880 -667 560 O HETATM 11 H FME A 0 24.315 45.036 11.769 1.00106.31 H HETATM 12 HCN FME A 0 25.145 46.262 9.971 1.00116.84 H HETATM 13 HA FME A 0 25.963 42.766 11.185 1.00 94.26 H HETATM 14 HB2 FME A 0 23.688 41.745 12.496 1.00 92.28 H HETATM 15 HB3 FME A 0 23.635 43.483 13.015 1.00 92.28 H HETATM 16 HG2 FME A 0 26.140 43.284 13.627 1.00 92.04 H HETATM 17 HG3 FME A 0 26.025 41.516 13.296 1.00 92.04 H HETATM 18 HE1 FME A 0 25.595 40.809 16.883 1.00 89.60 H HETATM 19 HE2 FME A 0 26.756 41.048 15.456 1.00 89.60 H HETATM 20 HE3 FME A 0 25.297 39.915 15.285 1.00 89.60 H