data_6DME # _entry.id 6DME # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.358 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DME pdb_00006dme 10.2210/pdb6dme/pdb WWPDB D_1000234924 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DME _pdbx_database_status.recvd_initial_deposition_date 2018-06-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Peselis, A.' 1 ? 'Serganov, A.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 887 _citation.page_last 894 _citation.title 'ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-018-0114-4 _citation.pdbx_database_id_PubMed 30120360 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Peselis, A.' 1 ? primary 'Serganov, A.' 2 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 128.10 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6DME _cell.details ? _cell.formula_units_Z ? _cell.length_a 100.184 _cell.length_a_esd ? _cell.length_b 51.816 _cell.length_b_esd ? _cell.length_c 77.862 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DME _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ppGpp Riboswitch' 33316.680 1 ? ? ? ? 2 non-polymer syn "GUANOSINE-5',3'-TETRAPHOSPHATE" 603.160 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 13 ? ? ? ? 4 non-polymer syn 'THALLIUM (I) ION' 204.383 1 ? ? ? ? 5 water nat water 18.015 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GAAGUGUACCUAGGGAUCCACCUCGAGAGAGGAAGGACCAAGCGGUACAGGCCUACUUCGGUAGGUUACACCGUG GGGAUAAAAGACCCGUGGCAAGUUU(CCC) ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAAGUGUACCUAGGGAUCCACCUCGAGAGAGGAAGGACCAAGCGGUACAGGCCUACUUCGGUAGGUUACACCGUGGGGA UAAAAGACCCGUGGCAAGUUUC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 A n 1 4 A n 1 5 G n 1 6 U n 1 7 G n 1 8 U n 1 9 A n 1 10 C n 1 11 C n 1 12 U n 1 13 A n 1 14 G n 1 15 G n 1 16 G n 1 17 A n 1 18 U n 1 19 C n 1 20 C n 1 21 A n 1 22 C n 1 23 C n 1 24 U n 1 25 C n 1 26 G n 1 27 A n 1 28 G n 1 29 A n 1 30 G n 1 31 A n 1 32 G n 1 33 G n 1 34 A n 1 35 A n 1 36 G n 1 37 G n 1 38 A n 1 39 C n 1 40 C n 1 41 A n 1 42 A n 1 43 G n 1 44 C n 1 45 G n 1 46 G n 1 47 U n 1 48 A n 1 49 C n 1 50 A n 1 51 G n 1 52 G n 1 53 C n 1 54 C n 1 55 U n 1 56 A n 1 57 C n 1 58 U n 1 59 U n 1 60 C n 1 61 G n 1 62 G n 1 63 U n 1 64 A n 1 65 G n 1 66 G n 1 67 U n 1 68 U n 1 69 A n 1 70 C n 1 71 A n 1 72 C n 1 73 C n 1 74 G n 1 75 U n 1 76 G n 1 77 G n 1 78 G n 1 79 G n 1 80 A n 1 81 U n 1 82 A n 1 83 A n 1 84 A n 1 85 A n 1 86 G n 1 87 A n 1 88 C n 1 89 C n 1 90 C n 1 91 G n 1 92 U n 1 93 G n 1 94 G n 1 95 C n 1 96 A n 1 97 A n 1 98 G n 1 99 U n 1 100 U n 1 101 U n 1 102 CCC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 102 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfobacillus acidophilus DSM 10332' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 679936 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6DME _struct_ref.pdbx_db_accession 6DME _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6DME _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 102 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6DME _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 102 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 102 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 G4P 'RNA linking' . "GUANOSINE-5',3'-TETRAPHOSPHATE" 'guanosine tetraphosphate;ppGpp' 'C10 H17 N5 O17 P4' 603.160 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 TL non-polymer . 'THALLIUM (I) ION' ? 'Tl 1' 204.383 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DME _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.075 M MgCl2, 0.1 M Na-acetate pH 4.2, and 21% PEG400 (v/v)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-02-12 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.105 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.105 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-2 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6DME _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.7 _reflns.d_resolution_low 30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15858 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.6 _reflns.pdbx_Rmerge_I_obs 0.095 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 21.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.049 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.961 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs 8587 _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.237 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.129 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DME _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.702 _refine.ls_d_res_low 27.520 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15858 _refine.ls_number_reflns_R_free 1608 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.85 _refine.ls_percent_reflns_R_free 10.14 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2036 _refine.ls_R_factor_R_free 0.2426 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1993 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.45 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.81 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.39 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2203 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 2261 _refine_hist.d_res_high 2.702 _refine_hist.d_res_low 27.520 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.003 ? 2506 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.782 ? 3914 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 19.829 ? 1248 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.058 ? 512 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 104 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.7018 2.7890 . . 135 1141 83.00 . . . 0.4355 . 0.3787 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7890 2.8885 . . 131 1261 89.00 . . . 0.3258 . 0.3296 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8885 3.0040 . . 135 1256 92.00 . . . 0.3327 . 0.2669 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0040 3.1406 . . 159 1295 95.00 . . . 0.2804 . 0.2438 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1406 3.3059 . . 140 1321 93.00 . . . 0.2532 . 0.2070 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3059 3.5126 . . 155 1304 96.00 . . . 0.2753 . 0.1948 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5126 3.7832 . . 146 1308 97.00 . . . 0.1929 . 0.1831 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7832 4.1628 . . 158 1339 97.00 . . . 0.2382 . 0.1508 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.1628 4.7624 . . 154 1370 98.00 . . . 0.1676 . 0.1569 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.7624 5.9900 . . 150 1331 97.00 . . . 0.1830 . 0.1442 . . . . . . . . . . 'X-RAY DIFFRACTION' 5.9900 27.5211 . . 145 1324 95.00 . . . 0.2319 . 0.1936 . . . . . . . . . . # _struct.entry_id 6DME _struct.title 'ppGpp Riboswitch bound to ppGpp, thallium acetate structure' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DME _struct_keywords.text 'riboswitch, non-coding, RNA, yKKC' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 4 ? Q N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale2 covale both ? A U 101 "O3'" ? ? ? 1_555 A CCC 102 P ? ? A U 101 A CCC 102 1_555 ? ? ? ? ? ? ? 1.607 ? ? metalc1 metalc ? ? A A 17 N1 ? ? ? 1_555 P TL . TL ? ? A A 17 A TL 215 1_555 ? ? ? ? ? ? ? 2.871 ? ? metalc2 metalc ? ? A A 35 "O2'" ? ? ? 1_555 P TL . TL ? ? A A 35 A TL 215 1_555 ? ? ? ? ? ? ? 3.544 ? ? metalc3 metalc ? ? A A 35 N3 ? ? ? 1_555 P TL . TL ? ? A A 35 A TL 215 1_555 ? ? ? ? ? ? ? 3.212 ? ? metalc4 metalc ? ? A G 36 N7 ? ? ? 1_555 P TL . TL ? ? A G 36 A TL 215 1_555 ? ? ? ? ? ? ? 3.311 ? ? metalc5 metalc ? ? A G 36 O6 ? ? ? 1_555 P TL . TL ? ? A G 36 A TL 215 1_555 ? ? ? ? ? ? ? 3.210 ? ? metalc6 metalc ? ? A G 37 N7 ? ? ? 1_555 P TL . TL ? ? A G 37 A TL 215 1_555 ? ? ? ? ? ? ? 2.836 ? ? metalc7 metalc ? ? A G 37 O6 ? ? ? 1_555 P TL . TL ? ? A G 37 A TL 215 1_555 ? ? ? ? ? ? ? 2.877 ? ? metalc8 metalc ? ? A A 38 N6 ? ? ? 1_555 P TL . TL ? ? A A 38 A TL 215 1_555 ? ? ? ? ? ? ? 3.287 ? ? metalc9 metalc ? ? A G 43 OP2 ? ? ? 1_555 E MG . MG ? ? A G 43 A MG 204 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc10 metalc ? ? A G 43 OP1 ? ? ? 1_555 F MG . MG ? ? A G 43 A MG 205 1_555 ? ? ? ? ? ? ? 2.627 ? ? metalc11 metalc ? ? A C 44 O2 ? ? ? 1_555 G MG . MG ? ? A C 44 A MG 206 1_555 ? ? ? ? ? ? ? 2.290 ? ? metalc12 metalc ? ? A G 66 OP1 ? ? ? 1_555 N MG . MG ? ? A G 66 A MG 213 1_555 ? ? ? ? ? ? ? 2.546 ? ? metalc13 metalc ? ? A C 72 OP2 ? ? ? 1_555 G MG . MG ? ? A C 72 A MG 206 1_555 ? ? ? ? ? ? ? 2.371 ? ? metalc14 metalc ? ? A A 87 OP1 ? ? ? 1_555 F MG . MG ? ? A A 87 A MG 205 1_555 ? ? ? ? ? ? ? 2.453 ? ? metalc15 metalc ? ? A C 88 OP1 ? ? ? 1_555 E MG . MG ? ? A C 88 A MG 204 1_555 ? ? ? ? ? ? ? 2.099 ? ? metalc16 metalc ? ? A C 88 OP2 ? ? ? 1_555 F MG . MG ? ? A C 88 A MG 205 1_555 ? ? ? ? ? ? ? 2.475 ? ? metalc17 metalc ? ? A A 96 OP1 ? ? ? 1_555 C MG . MG ? ? A A 96 A MG 202 1_555 ? ? ? ? ? ? ? 2.623 ? ? metalc18 metalc ? ? A A 96 OP2 ? ? ? 1_555 C MG . MG ? ? A A 96 A MG 202 1_555 ? ? ? ? ? ? ? 2.926 ? ? metalc19 metalc ? ? A A 97 OP2 ? ? ? 1_555 C MG . MG ? ? A A 97 A MG 202 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc20 metalc ? ? B G4P . O1A ? ? ? 1_555 D MG . MG ? ? A G4P 201 A MG 203 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc21 metalc ? ? B G4P . O2C ? ? ? 1_555 O MG . MG ? ? A G4P 201 A MG 214 1_555 ? ? ? ? ? ? ? 2.663 ? ? metalc22 metalc ? ? B G4P . O1D ? ? ? 1_555 O MG . MG ? ? A G4P 201 A MG 214 1_555 ? ? ? ? ? ? ? 2.955 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A CCC 102 N3 ? ? A GTP 1 A CCC 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 A CCC 102 O2 ? ? A GTP 1 A CCC 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 A CCC 102 N4 ? ? A GTP 1 A CCC 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 101 O2 ? ? A G 2 A U 101 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 101 N3 ? ? A G 2 A U 101 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 100 N3 ? ? A A 3 A U 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 100 O4 ? ? A A 3 A U 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 99 N3 ? ? A A 4 A U 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 99 O4 ? ? A A 4 A U 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 5 N2 ? ? ? 1_555 A A 69 N1 ? ? A G 5 A A 69 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog11 hydrog ? ? A G 5 N3 ? ? ? 1_555 A A 69 N6 ? ? A G 5 A A 69 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog12 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 50 N1 ? ? A U 6 A A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 50 N6 ? ? A U 6 A A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 49 N3 ? ? A G 7 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 49 O2 ? ? A G 7 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 49 N4 ? ? A G 7 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 48 N1 ? ? A U 8 A A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 48 N6 ? ? A U 8 A A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 47 N3 ? ? A A 9 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 47 O4 ? ? A A 9 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 46 N1 ? ? A C 10 A G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 46 O6 ? ? A C 10 A G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 46 N2 ? ? A C 10 A G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 45 N1 ? ? A C 11 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 45 O6 ? ? A C 11 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 45 N2 ? ? A C 11 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 42 N1 ? ? A U 12 A A 42 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog28 hydrog ? ? A A 13 N6 ? ? ? 1_555 A A 41 N3 ? ? A A 13 A A 41 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog29 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 14 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 14 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 14 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 N2 ? ? ? 1_555 A A 85 N3 ? ? A G 14 A A 85 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog33 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 15 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 15 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 15 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 16 N2 ? ? ? 1_555 A U 18 O4 ? ? A G 16 A U 18 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 16 N1 ? ? ? 1_555 A A 38 N1 ? ? A G 16 A A 38 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog38 hydrog ? ? A G 16 O6 ? ? ? 1_555 A A 38 N6 ? ? A G 16 A A 38 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog39 hydrog ? ? A G 16 N2 ? ? ? 1_555 A A 82 N1 ? ? A G 16 A A 82 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog40 hydrog ? ? A A 17 N3 ? ? ? 1_555 A C 19 N4 ? ? A A 17 A C 19 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog41 hydrog ? ? A A 17 N1 ? ? ? 1_555 A A 38 N6 ? ? A A 17 A A 38 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog42 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 19 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 19 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 19 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 20 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 20 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 20 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 34 N1 ? ? A A 21 A A 34 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog49 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 22 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 22 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 22 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 23 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 23 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 23 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A U 24 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 24 A A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A U 24 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 24 A A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 25 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 25 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 25 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 26 N2 ? ? ? 1_555 A A 29 N7 ? ? A G 26 A A 29 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog61 hydrog ? ? A G 43 N2 ? ? ? 1_555 A A 71 N3 ? ? A G 43 A A 71 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog62 hydrog ? ? A G 51 N1 ? ? ? 1_555 A U 68 O2 ? ? A G 51 A U 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog63 hydrog ? ? A G 51 O6 ? ? ? 1_555 A U 68 N3 ? ? A G 51 A U 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog64 hydrog ? ? A G 52 N1 ? ? ? 1_555 A U 67 O2 ? ? A G 52 A U 67 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog65 hydrog ? ? A G 52 O6 ? ? ? 1_555 A U 67 N3 ? ? A G 52 A U 67 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog66 hydrog ? ? A C 53 N3 ? ? ? 1_555 A G 66 N1 ? ? A C 53 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 53 N4 ? ? ? 1_555 A G 66 O6 ? ? A C 53 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 53 O2 ? ? ? 1_555 A G 66 N2 ? ? A C 53 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 54 N3 ? ? ? 1_555 A G 65 N1 ? ? A C 54 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 54 N4 ? ? ? 1_555 A G 65 O6 ? ? A C 54 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 54 O2 ? ? ? 1_555 A G 65 N2 ? ? A C 54 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 55 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 55 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 55 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 55 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 56 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 56 A U 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 56 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 56 A U 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 57 N3 ? ? ? 1_555 A G 62 N1 ? ? A C 57 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 57 N4 ? ? ? 1_555 A G 62 O6 ? ? A C 57 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 57 O2 ? ? ? 1_555 A G 62 N2 ? ? A C 57 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 70 O2 ? ? ? 1_555 A G 98 N2 ? ? A C 70 A G 98 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog80 hydrog ? ? A C 72 N3 ? ? ? 1_555 A G 94 N1 ? ? A C 72 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 72 N4 ? ? ? 1_555 A G 94 O6 ? ? A C 72 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 72 O2 ? ? ? 1_555 A G 94 N2 ? ? A C 72 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 73 N3 ? ? ? 1_555 A G 93 N1 ? ? A C 73 A G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 73 N4 ? ? ? 1_555 A G 93 O6 ? ? A C 73 A G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 73 O2 ? ? ? 1_555 A G 93 N2 ? ? A C 73 A G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 74 N1 ? ? ? 1_555 A U 92 O2 ? ? A G 74 A U 92 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog87 hydrog ? ? A G 74 O6 ? ? ? 1_555 A U 92 N3 ? ? A G 74 A U 92 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog88 hydrog ? ? A U 75 N3 ? ? ? 1_555 A G 91 O6 ? ? A U 75 A G 91 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog89 hydrog ? ? A U 75 O2 ? ? ? 1_555 A G 91 N1 ? ? A U 75 A G 91 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog90 hydrog ? ? A G 76 N1 ? ? ? 1_555 A C 90 N3 ? ? A G 76 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 76 N2 ? ? ? 1_555 A C 90 O2 ? ? A G 76 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 76 O6 ? ? ? 1_555 A C 90 N4 ? ? A G 76 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 77 N1 ? ? ? 1_555 A C 89 N3 ? ? A G 77 A C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 77 N2 ? ? ? 1_555 A C 89 O2 ? ? A G 77 A C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 77 O6 ? ? ? 1_555 A C 89 N4 ? ? A G 77 A C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 78 N1 ? ? ? 1_555 A C 88 N3 ? ? A G 78 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A G 78 N2 ? ? ? 1_555 A C 88 O2 ? ? A G 78 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A G 78 O6 ? ? ? 1_555 A C 88 N4 ? ? A G 78 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A G 79 N1 ? ? ? 1_555 A A 87 N1 ? ? A G 79 A A 87 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog100 hydrog ? ? A G 79 O6 ? ? ? 1_555 A A 87 N6 ? ? A G 79 A A 87 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog101 hydrog ? ? A A 80 N1 ? ? ? 1_555 A A 84 N6 ? ? A A 80 A A 84 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog102 hydrog ? ? A A 80 N6 ? ? ? 1_555 A A 84 N7 ? ? A A 80 A A 84 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog103 hydrog ? ? A A 80 N1 ? ? ? 1_555 A A 85 N6 ? ? A A 80 A A 85 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog104 hydrog ? ? A A 80 N6 ? ? ? 1_555 A A 85 N7 ? ? A A 80 A A 85 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog105 hydrog ? ? A U 81 N3 ? ? ? 1_555 A A 84 N7 ? ? A U 81 A A 84 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog106 hydrog ? ? A U 81 O2 ? ? ? 1_555 A A 84 N6 ? ? A U 81 A A 84 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A G4P 201 ? 11 'binding site for residue G4P A 201' AC2 Software A MG 202 ? 2 'binding site for residue MG A 202' AC3 Software A MG 203 ? 1 'binding site for residue MG A 203' AC4 Software A MG 204 ? 2 'binding site for residue MG A 204' AC5 Software A MG 205 ? 3 'binding site for residue MG A 205' AC6 Software A MG 206 ? 2 'binding site for residue MG A 206' AC7 Software A MG 210 ? 1 'binding site for residue MG A 210' AC8 Software A MG 212 ? 1 'binding site for residue MG A 212' AC9 Software A MG 213 ? 1 'binding site for residue MG A 213' AD1 Software A MG 214 ? 2 'binding site for residue MG A 214' AD2 Software A TL 215 ? 5 'binding site for residue TL A 215' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 G A 5 ? G A 5 . ? 1_555 ? 2 AC1 11 U A 6 ? U A 6 . ? 1_555 ? 3 AC1 11 G A 43 ? G A 43 . ? 1_555 ? 4 AC1 11 C A 70 ? C A 70 . ? 1_555 ? 5 AC1 11 A A 71 ? A A 71 . ? 1_555 ? 6 AC1 11 C A 72 ? C A 72 . ? 1_555 ? 7 AC1 11 G A 94 ? G A 94 . ? 1_555 ? 8 AC1 11 A A 96 ? A A 96 . ? 1_555 ? 9 AC1 11 MG D . ? MG A 203 . ? 1_555 ? 10 AC1 11 MG O . ? MG A 214 . ? 1_555 ? 11 AC1 11 HOH Q . ? HOH A 302 . ? 1_555 ? 12 AC2 2 A A 96 ? A A 96 . ? 1_555 ? 13 AC2 2 A A 97 ? A A 97 . ? 1_555 ? 14 AC3 1 G4P B . ? G4P A 201 . ? 1_555 ? 15 AC4 2 G A 43 ? G A 43 . ? 1_555 ? 16 AC4 2 C A 88 ? C A 88 . ? 1_555 ? 17 AC5 3 G A 43 ? G A 43 . ? 1_555 ? 18 AC5 3 A A 87 ? A A 87 . ? 1_555 ? 19 AC5 3 C A 88 ? C A 88 . ? 1_555 ? 20 AC6 2 C A 44 ? C A 44 . ? 1_555 ? 21 AC6 2 C A 72 ? C A 72 . ? 1_555 ? 22 AC7 1 G A 28 ? G A 28 . ? 1_555 ? 23 AC8 1 G A 52 ? G A 52 . ? 1_555 ? 24 AC9 1 G A 66 ? G A 66 . ? 1_555 ? 25 AD1 2 A A 3 ? A A 3 . ? 1_555 ? 26 AD1 2 G4P B . ? G4P A 201 . ? 1_555 ? 27 AD2 5 A A 17 ? A A 17 . ? 1_555 ? 28 AD2 5 A A 35 ? A A 35 . ? 1_555 ? 29 AD2 5 G A 36 ? G A 36 . ? 1_555 ? 30 AD2 5 G A 37 ? G A 37 . ? 1_555 ? 31 AD2 5 A A 38 ? A A 38 . ? 1_555 ? # _atom_sites.entry_id 6DME _atom_sites.fract_transf_matrix[1][1] 0.009982 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007827 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019299 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016321 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P TL # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 C 10 10 10 C C A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 A 13 13 13 A A A . n A 1 14 G 14 14 14 G G A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 A 17 17 17 A A A . n A 1 18 U 18 18 18 U U A . n A 1 19 C 19 19 19 C C A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 C 22 22 22 C C A . n A 1 23 C 23 23 23 C C A . n A 1 24 U 24 24 24 U U A . n A 1 25 C 25 25 25 C C A . n A 1 26 G 26 26 26 G G A . n A 1 27 A 27 27 27 A A A . n A 1 28 G 28 28 28 G G A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 A 34 34 34 A A A . n A 1 35 A 35 35 35 A A A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 A 38 38 38 A A A . n A 1 39 C 39 39 39 C C A . n A 1 40 C 40 40 40 C C A . n A 1 41 A 41 41 41 A A A . n A 1 42 A 42 42 42 A A A . n A 1 43 G 43 43 43 G G A . n A 1 44 C 44 44 44 C C A . n A 1 45 G 45 45 45 G G A . n A 1 46 G 46 46 46 G G A . n A 1 47 U 47 47 47 U U A . n A 1 48 A 48 48 48 A A A . n A 1 49 C 49 49 49 C C A . n A 1 50 A 50 50 50 A A A . n A 1 51 G 51 51 51 G G A . n A 1 52 G 52 52 52 G G A . n A 1 53 C 53 53 53 C C A . n A 1 54 C 54 54 54 C C A . n A 1 55 U 55 55 55 U U A . n A 1 56 A 56 56 56 A A A . n A 1 57 C 57 57 57 C C A . n A 1 58 U 58 58 58 U U A . n A 1 59 U 59 59 59 U U A . n A 1 60 C 60 60 60 C C A . n A 1 61 G 61 61 61 G G A . n A 1 62 G 62 62 62 G G A . n A 1 63 U 63 63 63 U U A . n A 1 64 A 64 64 64 A A A . n A 1 65 G 65 65 65 G G A . n A 1 66 G 66 66 66 G G A . n A 1 67 U 67 67 67 U U A . n A 1 68 U 68 68 68 U U A . n A 1 69 A 69 69 69 A A A . n A 1 70 C 70 70 70 C C A . n A 1 71 A 71 71 71 A A A . n A 1 72 C 72 72 72 C C A . n A 1 73 C 73 73 73 C C A . n A 1 74 G 74 74 74 G G A . n A 1 75 U 75 75 75 U U A . n A 1 76 G 76 76 76 G G A . n A 1 77 G 77 77 77 G G A . n A 1 78 G 78 78 78 G G A . n A 1 79 G 79 79 79 G G A . n A 1 80 A 80 80 80 A A A . n A 1 81 U 81 81 81 U U A . n A 1 82 A 82 82 82 A A A . n A 1 83 A 83 83 83 A A A . n A 1 84 A 84 84 84 A A A . n A 1 85 A 85 85 85 A A A . n A 1 86 G 86 86 86 G G A . n A 1 87 A 87 87 87 A A A . n A 1 88 C 88 88 88 C C A . n A 1 89 C 89 89 89 C C A . n A 1 90 C 90 90 90 C C A . n A 1 91 G 91 91 91 G G A . n A 1 92 U 92 92 92 U U A . n A 1 93 G 93 93 93 G G A . n A 1 94 G 94 94 94 G G A . n A 1 95 C 95 95 95 C C A . n A 1 96 A 96 96 96 A A A . n A 1 97 A 97 97 97 A A A . n A 1 98 G 98 98 98 G G A . n A 1 99 U 99 99 99 U U A . n A 1 100 U 100 100 100 U U A . n A 1 101 U 101 101 101 U U A . n A 1 102 CCC 102 102 102 CCC CCC A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G4P 1 201 1 G4P G4P A . C 3 MG 1 202 1 MG MG A . D 3 MG 1 203 2 MG MG A . E 3 MG 1 204 3 MG MG A . F 3 MG 1 205 4 MG MG A . G 3 MG 1 206 5 MG MG A . H 3 MG 1 207 6 MG MG A . I 3 MG 1 208 7 MG MG A . J 3 MG 1 209 8 MG MG A . K 3 MG 1 210 9 MG MG A . L 3 MG 1 211 10 MG MG A . M 3 MG 1 212 11 MG MG A . N 3 MG 1 213 12 MG MG A . O 3 MG 1 214 13 MG MG A . P 4 TL 1 215 14 TL TL A . Q 5 HOH 1 301 9 HOH HOH A . Q 5 HOH 2 302 7 HOH HOH A . Q 5 HOH 3 303 5 HOH HOH A . Q 5 HOH 4 304 6 HOH HOH A . Q 5 HOH 5 305 3 HOH HOH A . Q 5 HOH 6 306 8 HOH HOH A . Q 5 HOH 7 307 4 HOH HOH A . Q 5 HOH 8 308 2 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N1 ? A A 17 ? A A 17 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 "O2'" ? A A 35 ? A A 35 ? 1_555 79.4 ? 2 N1 ? A A 17 ? A A 17 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N3 ? A A 35 ? A A 35 ? 1_555 67.6 ? 3 "O2'" ? A A 35 ? A A 35 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N3 ? A A 35 ? A A 35 ? 1_555 77.5 ? 4 N1 ? A A 17 ? A A 17 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N7 ? A G 36 ? A G 36 ? 1_555 136.5 ? 5 "O2'" ? A A 35 ? A A 35 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N7 ? A G 36 ? A G 36 ? 1_555 78.4 ? 6 N3 ? A A 35 ? A A 35 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N7 ? A G 36 ? A G 36 ? 1_555 71.3 ? 7 N1 ? A A 17 ? A A 17 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 O6 ? A G 36 ? A G 36 ? 1_555 109.5 ? 8 "O2'" ? A A 35 ? A A 35 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 O6 ? A G 36 ? A G 36 ? 1_555 123.2 ? 9 N3 ? A A 35 ? A A 35 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 O6 ? A G 36 ? A G 36 ? 1_555 57.8 ? 10 N7 ? A G 36 ? A G 36 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 O6 ? A G 36 ? A G 36 ? 1_555 56.4 ? 11 N1 ? A A 17 ? A A 17 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N7 ? A G 37 ? A G 37 ? 1_555 140.8 ? 12 "O2'" ? A A 35 ? A A 35 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N7 ? A G 37 ? A G 37 ? 1_555 129.3 ? 13 N3 ? A A 35 ? A A 35 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N7 ? A G 37 ? A G 37 ? 1_555 136.3 ? 14 N7 ? A G 36 ? A G 36 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N7 ? A G 37 ? A G 37 ? 1_555 80.8 ? 15 O6 ? A G 36 ? A G 36 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N7 ? A G 37 ? A G 37 ? 1_555 78.8 ? 16 N1 ? A A 17 ? A A 17 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 O6 ? A G 37 ? A G 37 ? 1_555 81.2 ? 17 "O2'" ? A A 35 ? A A 35 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 O6 ? A G 37 ? A G 37 ? 1_555 159.4 ? 18 N3 ? A A 35 ? A A 35 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 O6 ? A G 37 ? A G 37 ? 1_555 101.3 ? 19 N7 ? A G 36 ? A G 36 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 O6 ? A G 37 ? A G 37 ? 1_555 121.1 ? 20 O6 ? A G 36 ? A G 36 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 O6 ? A G 37 ? A G 37 ? 1_555 70.2 ? 21 N7 ? A G 37 ? A G 37 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 O6 ? A G 37 ? A G 37 ? 1_555 65.3 ? 22 N1 ? A A 17 ? A A 17 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N6 ? A A 38 ? A A 38 ? 1_555 72.0 ? 23 "O2'" ? A A 35 ? A A 35 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N6 ? A A 38 ? A A 38 ? 1_555 89.3 ? 24 N3 ? A A 35 ? A A 35 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N6 ? A A 38 ? A A 38 ? 1_555 139.2 ? 25 N7 ? A G 36 ? A G 36 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N6 ? A A 38 ? A A 38 ? 1_555 143.8 ? 26 O6 ? A G 36 ? A G 36 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N6 ? A A 38 ? A A 38 ? 1_555 147.5 ? 27 N7 ? A G 37 ? A G 37 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N6 ? A A 38 ? A A 38 ? 1_555 81.3 ? 28 O6 ? A G 37 ? A G 37 ? 1_555 TL ? P TL . ? A TL 215 ? 1_555 N6 ? A A 38 ? A A 38 ? 1_555 78.3 ? 29 OP2 ? A G 43 ? A G 43 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 OP1 ? A C 88 ? A C 88 ? 1_555 87.7 ? 30 OP1 ? A G 43 ? A G 43 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 OP1 ? A A 87 ? A A 87 ? 1_555 67.1 ? 31 OP1 ? A G 43 ? A G 43 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 OP2 ? A C 88 ? A C 88 ? 1_555 72.3 ? 32 OP1 ? A A 87 ? A A 87 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 OP2 ? A C 88 ? A C 88 ? 1_555 73.9 ? 33 O2 ? A C 44 ? A C 44 ? 1_555 MG ? G MG . ? A MG 206 ? 1_555 OP2 ? A C 72 ? A C 72 ? 1_555 73.4 ? 34 OP1 ? A A 96 ? A A 96 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 OP2 ? A A 96 ? A A 96 ? 1_555 54.1 ? 35 OP1 ? A A 96 ? A A 96 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 OP2 ? A A 97 ? A A 97 ? 1_555 69.6 ? 36 OP2 ? A A 96 ? A A 96 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 OP2 ? A A 97 ? A A 97 ? 1_555 95.7 ? 37 O2C ? B G4P . ? A G4P 201 ? 1_555 MG ? O MG . ? A MG 214 ? 1_555 O1D ? B G4P . ? A G4P 201 ? 1_555 62.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-11-14 2 'Structure model' 1 1 2020-01-01 3 'Structure model' 1 2 2022-04-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Author supporting evidence' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' pdbx_database_PDB_obs_spr 3 3 'Structure model' chem_comp 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_database_PDB_obs_spr 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_chem_comp.pdbx_synonyms' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.value' 18 3 'Structure model' '_struct_conn.conn_type_id' 19 3 'Structure model' '_struct_conn.id' 20 3 'Structure model' '_struct_conn.pdbx_dist_value' 21 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.12_2829: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GTP 1 ? PG ? A GTP 1 PG 2 1 Y 1 A GTP 1 ? O1G ? A GTP 1 O1G 3 1 Y 1 A GTP 1 ? O2G ? A GTP 1 O2G 4 1 Y 1 A GTP 1 ? O3G ? A GTP 1 O3G # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6DME 'double helix' 6DME 'a-form double helix' 6DME 'hairpin loop' 6DME tetraloop 6DME 'bulge loop' 6DME 'mismatched base pair' 6DME 'quadruple helix' 6DME 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 A CCC 102 1_555 0.119 -0.063 -0.219 -5.911 -8.482 0.274 1 A_GTP1:CCC102_A A 1 ? A 102 ? 19 1 1 A G 2 1_555 A U 101 1_555 -2.209 -0.461 0.164 -0.907 -11.946 1.679 2 A_G2:U101_A A 2 ? A 101 ? 28 1 1 A A 3 1_555 A U 100 1_555 -0.146 -0.047 0.142 -4.399 -13.150 3.058 3 A_A3:U100_A A 3 ? A 100 ? 20 1 1 A A 4 1_555 A U 99 1_555 -0.148 -0.213 0.299 -5.269 -18.036 5.222 4 A_A4:U99_A A 4 ? A 99 ? 20 1 1 A A 69 1_555 A G 5 1_555 -3.735 3.482 -0.234 10.445 -4.740 61.716 5 A_A69:G5_A A 69 ? A 5 ? 10 6 1 A C 70 1_555 A G 98 1_555 -1.608 -7.886 1.497 13.913 -5.211 -177.018 6 A_C70:G98_A A 70 ? A 98 ? ? ? 1 A A 29 1_555 A G 26 1_555 -7.803 -5.109 0.700 -13.588 -3.614 -37.350 7 A_A29:G26_A A 29 ? A 26 ? ? ? 1 A G 30 1_555 A C 25 1_555 -0.280 -0.156 -0.083 -4.592 -4.150 -1.328 8 A_G30:C25_A A 30 ? A 25 ? 19 1 1 A A 31 1_555 A U 24 1_555 0.157 -0.074 0.092 2.501 -4.588 0.585 9 A_A31:U24_A A 31 ? A 24 ? 20 1 1 A G 32 1_555 A C 23 1_555 -0.082 -0.244 -0.239 -4.944 -8.924 -3.068 10 A_G32:C23_A A 32 ? A 23 ? 19 1 1 A G 33 1_555 A C 22 1_555 -0.592 0.038 -0.346 -13.867 -14.178 4.777 11 A_G33:C22_A A 33 ? A 22 ? 19 1 1 A A 34 1_555 A A 21 1_555 2.437 1.408 -0.642 -8.041 -13.506 -4.223 12 A_A34:A21_A A 34 ? A 21 ? ? 1 1 A G 36 1_555 A C 20 1_555 -0.243 -0.105 0.104 6.275 -1.632 2.630 13 A_G36:C20_A A 36 ? A 20 ? 19 1 1 A G 37 1_555 A C 19 1_555 0.012 -0.064 -0.521 -14.812 -18.826 2.243 14 A_G37:C19_A A 37 ? A 19 ? 19 1 1 A A 38 1_555 A G 16 1_555 -0.089 1.738 -0.400 12.211 -7.497 -23.576 15 A_A38:G16_A A 38 ? A 16 ? 8 1 1 A C 39 1_555 A G 15 1_555 0.372 -0.017 -0.656 21.456 -16.841 3.245 16 A_C39:G15_A A 39 ? A 15 ? 19 1 1 A C 40 1_555 A G 14 1_555 0.241 -0.201 -0.316 6.128 -3.481 1.596 17 A_C40:G14_A A 40 ? A 14 ? 19 1 1 A A 41 1_555 A A 13 1_555 6.356 -4.332 -0.225 3.147 2.854 -25.309 18 A_A41:A13_A A 41 ? A 13 ? ? 10 1 A A 42 1_555 A U 12 1_555 -0.552 -3.254 -0.026 -12.545 3.638 -171.997 19 A_A42:U12_A A 42 ? A 12 ? ? 2 1 A G 45 1_555 A C 11 1_555 -0.213 -0.289 -0.048 -5.467 -14.093 1.567 20 A_G45:C11_A A 45 ? A 11 ? 19 1 1 A G 46 1_555 A C 10 1_555 -0.197 -0.139 -0.297 -14.838 -16.092 2.658 21 A_G46:C10_A A 46 ? A 10 ? 19 1 1 A U 47 1_555 A A 9 1_555 0.041 -0.243 0.263 -6.683 -6.729 -1.970 22 A_U47:A9_A A 47 ? A 9 ? 20 1 1 A A 48 1_555 A U 8 1_555 0.199 -0.094 0.400 -1.183 -13.634 -1.906 23 A_A48:U8_A A 48 ? A 8 ? 20 1 1 A C 49 1_555 A G 7 1_555 0.359 -0.185 0.161 6.330 -8.635 2.690 24 A_C49:G7_A A 49 ? A 7 ? 19 1 1 A A 50 1_555 A U 6 1_555 0.258 -0.132 -0.047 5.101 -1.926 4.204 25 A_A50:U6_A A 50 ? A 6 ? 20 1 1 A G 51 1_555 A U 68 1_555 -2.434 -0.709 -0.166 7.958 -4.581 -8.206 26 A_G51:U68_A A 51 ? A 68 ? 28 1 1 A G 52 1_555 A U 67 1_555 -2.503 -0.475 0.078 6.969 -12.698 0.406 27 A_G52:U67_A A 52 ? A 67 ? 28 1 1 A C 53 1_555 A G 66 1_555 0.137 -0.064 0.082 2.264 -18.017 2.646 28 A_C53:G66_A A 53 ? A 66 ? 19 1 1 A C 54 1_555 A G 65 1_555 0.123 -0.186 -0.085 3.496 -11.721 0.838 29 A_C54:G65_A A 54 ? A 65 ? 19 1 1 A U 55 1_555 A A 64 1_555 -0.065 -0.112 0.246 1.991 -7.066 -0.604 30 A_U55:A64_A A 55 ? A 64 ? 20 1 1 A A 56 1_555 A U 63 1_555 0.008 -0.061 0.208 4.131 -10.018 -3.238 31 A_A56:U63_A A 56 ? A 63 ? 20 1 1 A C 57 1_555 A G 62 1_555 0.260 -0.113 -0.327 10.678 -2.911 0.840 32 A_C57:G62_A A 57 ? A 62 ? 19 1 1 A G 43 1_555 A A 71 1_555 -2.565 -7.262 0.931 -47.300 -18.835 -156.496 33 A_G43:A71_A A 43 ? A 71 ? ? 12 1 A C 72 1_555 A G 94 1_555 0.123 -0.094 -0.024 12.603 -16.142 0.381 34 A_C72:G94_A A 72 ? A 94 ? 19 1 1 A C 73 1_555 A G 93 1_555 0.194 -0.128 0.140 -0.659 -8.279 -3.027 35 A_C73:G93_A A 73 ? A 93 ? 19 1 1 A G 74 1_555 A U 92 1_555 -2.340 -0.228 -0.691 -4.981 -5.158 5.762 36 A_G74:U92_A A 74 ? A 92 ? 28 1 1 A U 75 1_555 A G 91 1_555 2.605 -0.422 -0.016 -0.074 -1.680 3.980 37 A_U75:G91_A A 75 ? A 91 ? 28 1 1 A G 76 1_555 A C 90 1_555 -0.143 -0.027 -0.367 -9.037 -1.507 1.815 38 A_G76:C90_A A 76 ? A 90 ? 19 1 1 A G 77 1_555 A C 89 1_555 -0.089 -0.082 0.045 -0.894 -2.211 0.759 39 A_G77:C89_A A 77 ? A 89 ? 19 1 1 A G 78 1_555 A C 88 1_555 -0.326 -0.006 -0.460 -18.065 -14.692 1.879 40 A_G78:C88_A A 78 ? A 88 ? 19 1 1 A G 79 1_555 A A 87 1_555 -0.064 1.572 0.023 -19.414 -1.380 -20.021 41 A_G79:A87_A A 79 ? A 87 ? 8 1 1 A A 80 1_555 A A 85 1_555 4.111 1.613 0.872 -2.338 6.038 -107.862 42 A_A80:A85_A A 80 ? A 85 ? 5 4 1 A U 81 1_555 A A 84 1_555 3.905 -1.714 -0.743 25.568 -11.501 -101.304 43 A_U81:A84_A A 81 ? A 84 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 A CCC 102 1_555 A G 2 1_555 A U 101 1_555 0.153 -1.838 2.768 -6.141 12.352 21.938 -6.507 -1.536 1.450 29.053 14.443 25.869 1 AA_GTP1G2:U101CCC102_AA A 1 ? A 102 ? A 2 ? A 101 ? 1 A G 2 1_555 A U 101 1_555 A A 3 1_555 A U 100 1_555 0.410 -1.353 3.308 -0.333 7.577 41.545 -2.640 -0.602 3.023 10.576 0.465 42.201 2 AA_G2A3:U100U101_AA A 2 ? A 101 ? A 3 ? A 100 ? 1 A A 3 1_555 A U 100 1_555 A A 4 1_555 A U 99 1_555 0.212 -2.172 3.135 -0.652 9.955 27.566 -6.116 -0.539 2.227 20.078 1.316 29.283 3 AA_A3A4:U99U100_AA A 3 ? A 100 ? A 4 ? A 99 ? 1 A A 4 1_555 A U 99 1_555 A A 69 1_555 A G 5 1_555 0.729 -1.050 3.369 12.511 4.587 91.991 -0.815 -0.259 3.384 3.176 -8.661 92.737 4 AA_A4A69:G5U99_AA A 4 ? A 99 ? A 69 ? A 5 ? 1 A A 69 1_555 A G 5 1_555 A C 70 1_555 A G 98 1_555 -1.918 1.499 1.235 -1.574 -22.220 158.444 0.785 0.974 1.184 -11.304 0.801 158.854 5 AA_A69C70:G98G5_AA A 69 ? A 5 ? A 70 ? A 98 ? 1 A A 29 1_555 A G 26 1_555 A G 30 1_555 A C 25 1_555 3.826 -1.584 3.075 2.306 9.514 53.506 -2.271 -4.060 2.926 10.468 -2.537 54.329 6 AA_A29G30:C25G26_AA A 29 ? A 26 ? A 30 ? A 25 ? 1 A G 30 1_555 A C 25 1_555 A A 31 1_555 A U 24 1_555 -0.321 -1.377 2.932 -2.008 6.656 36.908 -2.890 0.273 2.666 10.400 3.138 37.534 7 AA_G30A31:U24C25_AA A 30 ? A 25 ? A 31 ? A 24 ? 1 A A 31 1_555 A U 24 1_555 A G 32 1_555 A C 23 1_555 0.066 -1.952 3.339 2.554 9.196 29.712 -5.271 0.333 2.628 17.378 -4.827 31.175 8 AA_A31G32:C23U24_AA A 31 ? A 24 ? A 32 ? A 23 ? 1 A G 32 1_555 A C 23 1_555 A G 33 1_555 A C 22 1_555 0.852 -2.063 3.648 3.526 8.413 29.680 -5.551 -0.883 3.042 15.956 -6.687 31.021 9 AA_G32G33:C22C23_AA A 32 ? A 23 ? A 33 ? A 22 ? 1 A G 33 1_555 A C 22 1_555 A A 34 1_555 A A 21 1_555 -0.260 -1.100 3.207 5.187 6.712 40.511 -2.242 0.896 2.942 9.567 -7.393 41.353 10 AA_G33A34:A21C22_AA A 33 ? A 22 ? A 34 ? A 21 ? 1 A A 34 1_555 A A 21 1_555 A G 36 1_555 A C 20 1_555 -2.489 -1.991 3.214 4.941 10.980 38.833 -3.920 4.061 2.272 16.050 -7.222 40.588 11 AA_A34G36:C20A21_AA A 34 ? A 21 ? A 36 ? A 20 ? 1 A G 36 1_555 A C 20 1_555 A G 37 1_555 A C 19 1_555 0.125 -2.131 3.727 4.423 10.893 35.120 -4.900 0.428 2.952 17.459 -7.089 36.977 12 AA_G36G37:C19C20_AA A 36 ? A 20 ? A 37 ? A 19 ? 1 A G 37 1_555 A C 19 1_555 A A 38 1_555 A G 16 1_555 3.751 -1.663 3.234 -17.212 3.738 72.103 -1.485 -3.589 2.338 3.130 14.412 73.939 13 AA_G37A38:G16C19_AA A 37 ? A 19 ? A 38 ? A 16 ? 1 A A 38 1_555 A G 16 1_555 A C 39 1_555 A G 15 1_555 1.035 -1.371 3.047 -2.372 5.499 29.061 -3.699 -2.463 2.658 10.813 4.664 29.659 14 AA_A38C39:G15G16_AA A 38 ? A 16 ? A 39 ? A 15 ? 1 A C 39 1_555 A G 15 1_555 A C 40 1_555 A G 14 1_555 -0.893 -2.091 3.526 -6.057 18.353 33.485 -5.331 0.640 2.248 29.046 9.586 38.523 15 AA_C39C40:G14G15_AA A 39 ? A 15 ? A 40 ? A 14 ? 1 A C 40 1_555 A G 14 1_555 A A 41 1_555 A A 13 1_555 -2.103 -1.585 3.505 -0.743 5.704 56.602 -1.997 2.165 3.369 5.999 0.782 56.869 16 AA_C40A41:A13G14_AA A 40 ? A 14 ? A 41 ? A 13 ? 1 A A 41 1_555 A A 13 1_555 A A 42 1_555 A U 12 1_555 3.519 -0.490 2.270 -88.188 -155.352 139.272 0.063 -1.934 1.672 -77.713 44.115 179.526 17 AA_A41A42:U12A13_AA A 41 ? A 13 ? A 42 ? A 12 ? 1 A A 42 1_555 A U 12 1_555 A G 45 1_555 A C 11 1_555 -3.208 2.465 0.750 -155.995 -69.507 -103.086 -1.224 -1.628 -0.608 35.159 -78.908 -174.269 18 AA_A42G45:C11U12_AA A 42 ? A 12 ? A 45 ? A 11 ? 1 A G 45 1_555 A C 11 1_555 A G 46 1_555 A C 10 1_555 -0.479 -2.266 3.538 0.639 6.462 29.787 -5.612 1.039 2.981 12.385 -1.225 30.471 19 AA_G45G46:C10C11_AA A 45 ? A 11 ? A 46 ? A 10 ? 1 A G 46 1_555 A C 10 1_555 A U 47 1_555 A A 9 1_555 -0.233 -1.287 3.085 -3.463 3.885 32.634 -2.872 -0.131 2.925 6.860 6.114 33.036 20 AA_G46U47:A9C10_AA A 46 ? A 10 ? A 47 ? A 9 ? 1 A U 47 1_555 A A 9 1_555 A A 48 1_555 A U 8 1_555 0.347 -1.191 3.047 3.458 7.757 32.177 -3.244 -0.089 2.715 13.699 -6.106 33.250 21 AA_U47A48:U8A9_AA A 47 ? A 9 ? A 48 ? A 8 ? 1 A A 48 1_555 A U 8 1_555 A C 49 1_555 A G 7 1_555 0.494 -1.134 3.098 1.262 3.914 32.701 -2.619 -0.671 2.963 6.917 -2.230 32.952 22 AA_A48C49:G7U8_AA A 48 ? A 8 ? A 49 ? A 7 ? 1 A C 49 1_555 A G 7 1_555 A A 50 1_555 A U 6 1_555 0.567 -1.699 3.249 -0.113 4.791 29.102 -4.310 -1.137 2.936 9.454 0.223 29.486 23 AA_C49A50:U6G7_AA A 49 ? A 7 ? A 50 ? A 6 ? 1 A A 50 1_555 A U 6 1_555 A G 51 1_555 A U 68 1_555 3.270 -1.796 3.489 -7.190 -0.136 48.696 -2.148 -4.466 3.012 -0.164 8.665 49.193 24 AA_A50G51:U68U6_AA A 50 ? A 6 ? A 51 ? A 68 ? 1 A G 51 1_555 A U 68 1_555 A G 52 1_555 A U 67 1_555 0.068 -2.007 3.224 -9.882 3.685 33.763 -3.826 -1.504 2.864 6.161 16.521 35.326 25 AA_G51G52:U67U68_AA A 51 ? A 68 ? A 52 ? A 67 ? 1 A G 52 1_555 A U 67 1_555 A C 53 1_555 A G 66 1_555 -0.288 -1.258 3.349 -1.642 5.761 45.186 -2.132 0.228 3.182 7.459 2.126 45.561 26 AA_G52C53:G66U67_AA A 52 ? A 67 ? A 53 ? A 66 ? 1 A C 53 1_555 A G 66 1_555 A C 54 1_555 A G 65 1_555 0.768 -2.245 3.110 6.743 7.121 25.923 -6.231 -0.148 2.532 15.199 -14.393 27.687 27 AA_C53C54:G65G66_AA A 53 ? A 66 ? A 54 ? A 65 ? 1 A C 54 1_555 A G 65 1_555 A U 55 1_555 A A 64 1_555 -0.347 -1.541 3.275 -1.118 5.511 32.432 -3.628 0.428 2.989 9.775 1.983 32.903 28 AA_C54U55:A64G65_AA A 54 ? A 65 ? A 55 ? A 64 ? 1 A U 55 1_555 A A 64 1_555 A A 56 1_555 A U 63 1_555 -0.239 -1.195 2.983 1.615 9.688 33.991 -3.203 0.600 2.544 16.158 -2.694 35.342 29 AA_U55A56:U63A64_AA A 55 ? A 64 ? A 56 ? A 63 ? 1 A A 56 1_555 A U 63 1_555 A C 57 1_555 A G 62 1_555 0.750 -1.338 3.179 3.352 0.019 33.024 -2.345 -0.761 3.237 0.034 -5.878 33.189 30 AA_A56C57:G62U63_AA A 56 ? A 63 ? A 57 ? A 62 ? 1 A C 72 1_555 A G 94 1_555 A C 73 1_555 A G 93 1_555 -0.484 -1.791 3.466 -1.658 11.457 35.220 -4.333 0.544 2.788 18.333 2.654 37.016 31 AA_C72C73:G93G94_AA A 72 ? A 94 ? A 73 ? A 93 ? 1 A C 73 1_555 A G 93 1_555 A G 74 1_555 A U 92 1_555 2.313 -3.049 3.334 8.759 13.239 12.154 -13.955 -3.255 1.033 44.028 -29.129 19.969 32 AA_C73G74:U92G93_AA A 73 ? A 93 ? A 74 ? A 92 ? 1 A G 74 1_555 A U 92 1_555 A U 75 1_555 A G 91 1_555 0.246 -1.331 3.303 -5.426 0.294 48.282 -1.641 -0.718 3.251 0.358 6.609 48.569 33 AA_G74U75:G91U92_AA A 74 ? A 92 ? A 75 ? A 91 ? 1 A U 75 1_555 A G 91 1_555 A G 76 1_555 A C 90 1_555 -1.222 -3.230 3.599 1.543 5.149 12.570 -18.142 6.502 1.962 22.233 -6.662 13.667 34 AA_U75G76:C90G91_AA A 75 ? A 91 ? A 76 ? A 90 ? 1 A G 76 1_555 A C 90 1_555 A G 77 1_555 A C 89 1_555 -0.116 -2.157 3.118 -3.639 1.333 26.794 -4.925 -0.618 2.998 2.857 7.802 27.068 35 AA_G76G77:C89C90_AA A 76 ? A 90 ? A 77 ? A 89 ? 1 A G 77 1_555 A C 89 1_555 A G 78 1_555 A C 88 1_555 0.484 -2.266 3.674 6.046 13.599 33.279 -5.543 0.074 2.626 22.403 -9.960 36.369 36 AA_G77G78:C88C89_AA A 77 ? A 89 ? A 78 ? A 88 ? 1 A G 78 1_555 A C 88 1_555 A G 79 1_555 A A 87 1_555 -0.943 -2.175 3.263 0.541 0.178 32.505 -3.916 1.778 3.235 0.318 -0.966 32.510 37 AA_G78G79:A87C88_AA A 78 ? A 88 ? A 79 ? A 87 ? 1 A G 79 1_555 A A 87 1_555 A A 80 1_555 A A 85 1_555 -3.052 -2.125 2.998 -0.235 0.017 60.537 -2.109 3.017 3.009 0.017 0.233 60.538 38 AA_G79A80:A85A87_AA A 79 ? A 87 ? A 80 ? A 85 ? 1 A A 80 1_555 A A 85 1_555 A U 81 1_555 A A 84 1_555 0.873 -0.396 2.729 4.582 -10.202 26.331 1.241 -0.851 2.796 -21.219 -9.531 28.569 39 AA_A80U81:A84A85_AA A 80 ? A 85 ? A 81 ? A 84 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R01GM112940 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' F31GM119357 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' T32GM88118 3 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id G4P _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id G4P _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5',3'-TETRAPHOSPHATE" G4P 3 'MAGNESIUM ION' MG 4 'THALLIUM (I) ION' TL 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? #