HEADER DE NOVO PROTEIN 05-JUN-18 6DMP TITLE DE NOVO DESIGN OF A PROTEIN HETERODIMER WITH SPECIFICITY MEDIATED BY TITLE 2 HYDROGEN BOND NETWORKS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESIGNED ORTHOGONAL PROTEIN DHD13_XAAA_A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DESIGNED ORTHOGONAL PROTEIN DHD13_XAAA_B; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DE NOVO PROTEIN, COMPUTATIONAL DESIGN, COILED COIL EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Z.CHEN,D.FLORES-SOLIS,N.G.SGOURAKIS,D.BAKER REVDAT 6 15-MAY-24 6DMP 1 REMARK REVDAT 5 14-JUN-23 6DMP 1 REMARK REVDAT 4 20-NOV-19 6DMP 1 REMARK REVDAT 3 16-JAN-19 6DMP 1 JRNL REVDAT 2 02-JAN-19 6DMP 1 JRNL REVDAT 1 19-DEC-18 6DMP 0 JRNL AUTH Z.CHEN,S.E.BOYKEN,M.JIA,F.BUSCH,D.FLORES-SOLIS,M.J.BICK, JRNL AUTH 2 P.LU,Z.L.VANAERNUM,A.SAHASRABUDDHE,R.A.LANGAN,S.BERMEO, JRNL AUTH 3 T.J.BRUNETTE,V.K.MULLIGAN,L.P.CARTER,F.DIMAIO,N.G.SGOURAKIS, JRNL AUTH 4 V.H.WYSOCKI,D.BAKER JRNL TITL PROGRAMMABLE DESIGN OF ORTHOGONAL PROTEIN HETERODIMERS. JRNL REF NATURE V. 565 106 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 30568301 JRNL DOI 10.1038/S41586-018-0802-Y REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CS-ROSETTA 3.0 REMARK 3 AUTHORS : SHEN, VERNON, BAKER AND BAX REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234918. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-13C; U-15N] REMARK 210 DHD13_XAAA, 1.0 MM [U-13C; U-15N] REMARK 210 DHD13_XAAB. 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 4D HNCH TOCSY; 4D HNCH NOESY; 4D REMARK 210 HCCH NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE, CS-ROSETTA 3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN B 120 -70.53 -87.29 REMARK 500 1 SER B 162 36.92 -141.72 REMARK 500 2 GLN B 157 -72.61 -102.89 REMARK 500 3 TYR A 74 -65.87 -120.27 REMARK 500 3 GLU B 86 107.71 -50.90 REMARK 500 3 SER B 121 53.84 -144.47 REMARK 500 4 LEU A 73 -62.21 -106.63 REMARK 500 4 SER B 121 136.46 -170.89 REMARK 500 5 GLN B 157 -70.79 -86.04 REMARK 500 6 ILE A 14 -61.25 -126.34 REMARK 500 6 GLU B 86 109.69 -51.61 REMARK 500 6 GLN B 157 -68.71 -107.89 REMARK 500 7 LEU A 73 -60.88 -103.16 REMARK 500 7 GLU B 86 106.19 -54.07 REMARK 500 7 ARG B 119 -63.21 -93.69 REMARK 500 7 GLU B 158 122.18 177.90 REMARK 500 9 GLU B 86 107.29 -49.46 REMARK 500 9 GLN B 157 -72.67 -105.37 REMARK 500 10 SER A 41 -157.39 -163.04 REMARK 500 10 GLU B 86 101.55 -55.89 REMARK 500 10 SER B 121 63.26 -172.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30474 RELATED DB: BMRB REMARK 900 DHD13_XAAA DBREF 6DMP A 1 77 PDB 6DMP 6DMP 1 77 DBREF 6DMP B 85 166 PDB 6DMP 6DMP 85 166 SEQRES 1 A 77 GLY THR LYS GLU ASP ILE LEU GLU ARG GLN ARG LYS ILE SEQRES 2 A 77 ILE GLU ARG ALA GLN GLU ILE HIS ARG ARG GLN GLN GLU SEQRES 3 A 77 ILE LEU GLU GLU LEU GLU ARG ILE ILE ARG LYS PRO GLY SEQRES 4 A 77 SER SER GLU GLU ALA MET LYS ARG MET LEU LYS LEU LEU SEQRES 5 A 77 GLU GLU SER LEU ARG LEU LEU LYS GLU LEU LEU GLU LEU SEQRES 6 A 77 SER GLU GLU SER ALA GLN LEU LEU TYR GLU GLN ARG SEQRES 1 B 82 THR GLU LYS ARG LEU LEU GLU GLU ALA GLU ARG ALA HIS SEQRES 2 B 82 ARG GLU GLN LYS GLU ILE ILE LYS LYS ALA GLN GLU LEU SEQRES 3 B 82 HIS ARG ARG LEU GLU GLU ILE VAL ARG GLN SER GLY SER SEQRES 4 B 82 SER GLU GLU ALA LYS LYS GLU ALA LYS LYS ILE LEU GLU SEQRES 5 B 82 GLU ILE ARG GLU LEU SER LYS ARG SER LEU GLU LEU LEU SEQRES 6 B 82 ARG GLU ILE LEU TYR LEU SER GLN GLU GLN LYS GLY SER SEQRES 7 B 82 LEU VAL PRO ARG HELIX 1 AA1 GLY A 1 LYS A 37 1 37 HELIX 2 AA2 SER A 41 GLN A 76 1 36 HELIX 3 AA3 LYS B 87 GLY B 122 1 36 HELIX 4 AA4 SER B 124 GLN B 157 1 34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1