HEADER IMMUNE SYSTEM 05-JUN-18 6DN0 TITLE RETROFITTED ANTIBODIES WITH STABILIZING MUTATIONS: HERCEPTIN SCFV TITLE 2 MUTANT WITH VH K30D AND VL S52D. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN VARIABLE HEAVY CHAIN OF HERCEPTIN CONTAINING VH COMPND 3 MUTATION K30D; COMPND 4 CHAIN: A, C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HUMAN VARIABLE LIGHT CHAIN OF HERCEPTIN CONTAINING VL COMPND 8 MUTATION S52D; COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET12A; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD (DE3); SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET12A KEYWDS HERCEPTIN, RETROFIT, STABILIZING MUTATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.B.LANGLEY,B.ROOME,D.CHRIST REVDAT 3 11-OCT-23 6DN0 1 REMARK REVDAT 2 01-JAN-20 6DN0 1 REMARK REVDAT 1 12-JUN-19 6DN0 0 SPRSDE 12-JUN-19 6DN0 4X4Y JRNL AUTH B.ROOME,D.B.LANGLEY,R.ROUET,D.CHRIST JRNL TITL RETROFITTING ANTIBODIES WITH STABILIZING MUTATIONS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1925 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2646 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3389 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.99000 REMARK 3 B22 (A**2) : 0.99000 REMARK 3 B33 (A**2) : -3.20000 REMARK 3 B12 (A**2) : 0.49000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.929 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3500 ; 0.010 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2968 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4762 ; 1.322 ; 1.661 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6939 ; 0.886 ; 1.642 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 7.426 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;30.215 ;21.726 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;13.755 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.976 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4007 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 697 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 119 C 1 119 3361 0.140 0.050 REMARK 3 2 B 1 106 D 1 106 2869 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3333 -16.9841 15.8307 REMARK 3 T TENSOR REMARK 3 T11: 0.0399 T22: 0.0389 REMARK 3 T33: 0.0303 T12: -0.0304 REMARK 3 T13: -0.0021 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.7211 L22: 1.3853 REMARK 3 L33: 3.7769 L12: 0.7819 REMARK 3 L13: -0.4576 L23: 0.4124 REMARK 3 S TENSOR REMARK 3 S11: -0.1754 S12: 0.0678 S13: 0.0759 REMARK 3 S21: -0.1243 S22: 0.1869 S23: -0.0915 REMARK 3 S31: -0.2768 S32: 0.2138 S33: -0.0116 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 106 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1226 -30.2321 -1.0752 REMARK 3 T TENSOR REMARK 3 T11: 0.0986 T22: 0.0979 REMARK 3 T33: 0.1147 T12: -0.0806 REMARK 3 T13: 0.0463 T23: -0.0707 REMARK 3 L TENSOR REMARK 3 L11: 3.6573 L22: 2.9545 REMARK 3 L33: 4.7731 L12: -0.2788 REMARK 3 L13: 0.6040 L23: 1.3130 REMARK 3 S TENSOR REMARK 3 S11: 0.1489 S12: 0.1211 S13: -0.2316 REMARK 3 S21: -0.1552 S22: -0.0150 S23: 0.0306 REMARK 3 S31: 0.0384 S32: 0.1130 S33: -0.1339 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 119 REMARK 3 ORIGIN FOR THE GROUP (A): 62.4098 -15.0983 1.5450 REMARK 3 T TENSOR REMARK 3 T11: 0.0137 T22: 0.0947 REMARK 3 T33: 0.0421 T12: 0.0218 REMARK 3 T13: 0.0222 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 4.0972 L22: 4.0123 REMARK 3 L33: 4.7596 L12: 1.8435 REMARK 3 L13: -1.3439 L23: -1.3125 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: -0.4592 S13: -0.1856 REMARK 3 S21: -0.0830 S22: -0.2273 S23: -0.1965 REMARK 3 S31: 0.0932 S32: 0.4964 S33: 0.2580 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 106 REMARK 3 ORIGIN FOR THE GROUP (A): 66.9853 -24.5644 20.9771 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.3728 REMARK 3 T33: 0.2025 T12: 0.0858 REMARK 3 T13: -0.0044 T23: 0.1856 REMARK 3 L TENSOR REMARK 3 L11: 4.0080 L22: 3.3130 REMARK 3 L33: 5.2446 L12: -0.5035 REMARK 3 L13: -0.3182 L23: -0.7017 REMARK 3 S TENSOR REMARK 3 S11: -0.1222 S12: -0.3586 S13: 0.0065 REMARK 3 S21: 0.5335 S22: -0.1403 S23: -0.3255 REMARK 3 S31: 0.0324 S32: 0.6996 S33: 0.2624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6DN0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38572 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 1.01800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 4X4X REMARK 200 REMARK 200 REMARK: HEXAGONAL RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EQUAL VOLUMES OF PROTEIN (8.0 MG/ML IN REMARK 280 25 MM TRIS (PH 8.0)) WERE COMBINED WITH AN EQUAL VOLUME OF WELL REMARK 280 SOLUTION (3.5 M SODIUM FORMATE, 100 MM SODIUM ACETATE (PH 4.6), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.22567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.45133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.45133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.22567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 120 REMARK 465 GLY A 121 REMARK 465 GLY A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 GLY A 131 REMARK 465 GLY A 132 REMARK 465 GLY A 133 REMARK 465 GLY A 134 REMARK 465 SER A 135 REMARK 465 THR A 136 REMARK 465 GLY C 101 REMARK 465 ASP C 102 REMARK 465 GLY C 103 REMARK 465 SER C 120 REMARK 465 GLY C 121 REMARK 465 GLY C 122 REMARK 465 GLY C 123 REMARK 465 GLY C 124 REMARK 465 SER C 125 REMARK 465 GLY C 126 REMARK 465 GLY C 127 REMARK 465 GLY C 128 REMARK 465 GLY C 129 REMARK 465 SER C 130 REMARK 465 GLY C 131 REMARK 465 GLY C 132 REMARK 465 GLY C 133 REMARK 465 GLY C 134 REMARK 465 SER C 135 REMARK 465 THR C 136 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 69 OG1 CG2 REMARK 470 PHE B 83 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP C 31 CG OD1 OD2 REMARK 470 ARG D 24 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 27 CG CD OE1 NE2 REMARK 470 LYS D 45 CG CD CE NZ REMARK 470 ASP D 52 CG OD1 OD2 REMARK 470 LEU D 54 CG CD1 CD2 REMARK 470 TYR D 55 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER D 56 OG REMARK 470 VAL D 58 CG1 CG2 REMARK 470 SER D 60 OG REMARK 470 ASP D 70 CG OD1 OD2 REMARK 470 GLN D 79 CG CD OE1 NE2 REMARK 470 PHE D 83 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN D 100 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 106 -140.48 51.90 REMARK 500 ASN B 30 -136.53 50.37 REMARK 500 ALA B 51 -46.18 69.01 REMARK 500 ASN D 30 -140.09 55.05 REMARK 500 ALA D 51 -41.07 67.58 REMARK 500 PHE D 83 109.91 -59.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 59 0.09 SIDE CHAIN REMARK 500 ARG B 18 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT C 201 DBREF 6DN0 A 1 136 PDB 6DN0 6DN0 1 136 DBREF 6DN0 B 1 106 PDB 6DN0 6DN0 1 106 DBREF 6DN0 C 1 136 PDB 6DN0 6DN0 1 136 DBREF 6DN0 D 1 106 PDB 6DN0 6DN0 1 106 SEQRES 1 A 136 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 136 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 136 PHE ASN ILE ASP ASP THR TYR ILE HIS TRP VAL ARG GLN SEQRES 4 A 136 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG ILE TYR SEQRES 5 A 136 PRO THR ASN GLY TYR THR ARG TYR ALA ASP SER VAL LYS SEQRES 6 A 136 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 A 136 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 136 ALA VAL TYR TYR CYS SER ARG TRP GLY GLY ASP GLY PHE SEQRES 9 A 136 TYR ALA MET ASP VAL TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 A 136 VAL SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER SEQRES 11 A 136 GLY GLY GLY GLY SER THR SEQRES 1 B 106 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 B 106 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 B 106 GLN ASP VAL ASN THR ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 B 106 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA ASP SEQRES 5 B 106 PHE LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 B 106 ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 B 106 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN HIS SEQRES 8 B 106 TYR THR THR PRO PRO THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 B 106 GLU ILE SEQRES 1 C 136 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 136 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 136 PHE ASN ILE ASP ASP THR TYR ILE HIS TRP VAL ARG GLN SEQRES 4 C 136 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG ILE TYR SEQRES 5 C 136 PRO THR ASN GLY TYR THR ARG TYR ALA ASP SER VAL LYS SEQRES 6 C 136 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 C 136 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 C 136 ALA VAL TYR TYR CYS SER ARG TRP GLY GLY ASP GLY PHE SEQRES 9 C 136 TYR ALA MET ASP VAL TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 C 136 VAL SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER SEQRES 11 C 136 GLY GLY GLY GLY SER THR SEQRES 1 D 106 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 D 106 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 D 106 GLN ASP VAL ASN THR ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 D 106 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA ASP SEQRES 5 D 106 PHE LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 D 106 ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 D 106 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN HIS SEQRES 8 D 106 TYR THR THR PRO PRO THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 D 106 GLU ILE HET FMT A 201 3 HET FMT A 202 3 HET FMT B 201 3 HET FMT C 201 3 HETNAM FMT FORMIC ACID FORMUL 5 FMT 4(C H2 O2) FORMUL 9 HOH *63(H2 O) HELIX 1 AA1 ASN A 28 THR A 32 5 5 HELIX 2 AA2 ARG A 87 THR A 91 5 5 HELIX 3 AA3 GLY A 101 PHE A 104 5 4 HELIX 4 AA4 GLN B 79 PHE B 83 5 5 HELIX 5 AA5 ASN C 28 THR C 32 5 5 HELIX 6 AA6 ARG C 87 THR C 91 5 5 HELIX 7 AA7 GLN D 79 PHE D 83 5 5 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 AA2 6 LEU A 11 VAL A 12 0 SHEET 2 AA2 6 THR A 114 VAL A 118 1 O THR A 117 N VAL A 12 SHEET 3 AA2 6 ALA A 92 TRP A 99 -1 N TYR A 94 O THR A 114 SHEET 4 AA2 6 ILE A 34 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 GLU A 46 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O ARG A 59 N ARG A 50 SHEET 1 AA3 4 LEU A 11 VAL A 12 0 SHEET 2 AA3 4 THR A 114 VAL A 118 1 O THR A 117 N VAL A 12 SHEET 3 AA3 4 ALA A 92 TRP A 99 -1 N TYR A 94 O THR A 114 SHEET 4 AA3 4 MET A 107 TRP A 110 -1 O VAL A 109 N ARG A 98 SHEET 1 AA4 4 MET B 4 SER B 7 0 SHEET 2 AA4 4 VAL B 19 ALA B 25 -1 O ARG B 24 N THR B 5 SHEET 3 AA4 4 ASP B 70 ILE B 75 -1 O PHE B 71 N CYS B 23 SHEET 4 AA4 4 PHE B 62 SER B 67 -1 N SER B 67 O ASP B 70 SHEET 1 AA5 6 SER B 10 SER B 12 0 SHEET 2 AA5 6 THR B 102 GLU B 105 1 O LYS B 103 N LEU B 11 SHEET 3 AA5 6 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 AA5 6 VAL B 33 GLN B 38 -1 N GLN B 38 O THR B 85 SHEET 5 AA5 6 LYS B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA5 6 PHE B 53 LEU B 54 -1 O PHE B 53 N TYR B 49 SHEET 1 AA6 4 SER B 10 SER B 12 0 SHEET 2 AA6 4 THR B 102 GLU B 105 1 O LYS B 103 N LEU B 11 SHEET 3 AA6 4 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 AA6 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SHEET 1 AA7 4 GLN C 3 GLY C 8 0 SHEET 2 AA7 4 LEU C 18 SER C 25 -1 O ALA C 23 N VAL C 5 SHEET 3 AA7 4 THR C 78 MET C 83 -1 O MET C 83 N LEU C 18 SHEET 4 AA7 4 PHE C 68 ASP C 73 -1 N THR C 69 O GLN C 82 SHEET 1 AA8 6 GLY C 10 VAL C 12 0 SHEET 2 AA8 6 THR C 114 VAL C 118 1 O THR C 117 N VAL C 12 SHEET 3 AA8 6 ALA C 92 TRP C 99 -1 N TYR C 94 O THR C 114 SHEET 4 AA8 6 ILE C 34 GLN C 39 -1 N VAL C 37 O TYR C 95 SHEET 5 AA8 6 LEU C 45 ILE C 51 -1 O GLU C 46 N ARG C 38 SHEET 6 AA8 6 THR C 58 TYR C 60 -1 O ARG C 59 N ARG C 50 SHEET 1 AA9 4 GLY C 10 VAL C 12 0 SHEET 2 AA9 4 THR C 114 VAL C 118 1 O THR C 117 N VAL C 12 SHEET 3 AA9 4 ALA C 92 TRP C 99 -1 N TYR C 94 O THR C 114 SHEET 4 AA9 4 MET C 107 TRP C 110 -1 O VAL C 109 N ARG C 98 SHEET 1 AB1 4 MET D 4 SER D 7 0 SHEET 2 AB1 4 VAL D 19 ALA D 25 -1 O ARG D 24 N THR D 5 SHEET 3 AB1 4 ASP D 70 ILE D 75 -1 O PHE D 71 N CYS D 23 SHEET 4 AB1 4 PHE D 62 SER D 67 -1 N SER D 67 O ASP D 70 SHEET 1 AB2 6 SER D 10 SER D 12 0 SHEET 2 AB2 6 THR D 102 GLU D 105 1 O LYS D 103 N LEU D 11 SHEET 3 AB2 6 ALA D 84 GLN D 90 -1 N ALA D 84 O VAL D 104 SHEET 4 AB2 6 VAL D 33 GLN D 38 -1 N TYR D 36 O TYR D 87 SHEET 5 AB2 6 PRO D 44 TYR D 49 -1 O LEU D 47 N TRP D 35 SHEET 6 AB2 6 PHE D 53 LEU D 54 -1 O PHE D 53 N TYR D 49 SHEET 1 AB3 4 SER D 10 SER D 12 0 SHEET 2 AB3 4 THR D 102 GLU D 105 1 O LYS D 103 N LEU D 11 SHEET 3 AB3 4 ALA D 84 GLN D 90 -1 N ALA D 84 O VAL D 104 SHEET 4 AB3 4 THR D 97 PHE D 98 -1 O THR D 97 N GLN D 90 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.11 SSBOND 2 CYS B 23 CYS B 88 1555 1555 2.13 SSBOND 3 CYS C 22 CYS C 96 1555 1555 2.08 SSBOND 4 CYS D 23 CYS D 88 1555 1555 2.12 CISPEP 1 SER B 7 PRO B 8 0 -4.75 CISPEP 2 THR B 94 PRO B 95 0 -4.53 CISPEP 3 SER D 7 PRO D 8 0 -11.39 CISPEP 4 THR D 94 PRO D 95 0 -0.72 SITE 1 AC1 6 ARG A 50 THR A 58 ARG A 59 PHE A 104 SITE 2 AC1 6 HOH A 303 ARG C 19 SITE 1 AC2 6 PHE A 27 ASP A 31 THR A 32 ARG A 98 SITE 2 AC2 6 HOH A 301 HOH A 307 SITE 1 AC3 5 LEU A 45 TRP A 47 HOH A 306 THR B 97 SITE 2 AC3 5 PHE B 98 SITE 1 AC4 2 ARG C 50 THR D 94 CRYST1 91.981 91.981 114.677 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010872 0.006277 0.000000 0.00000 SCALE2 0.000000 0.012554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008720 0.00000