data_6DN2 # _entry.id 6DN2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DN2 pdb_00006dn2 10.2210/pdb6dn2/pdb WWPDB D_1000234919 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DN2 _pdbx_database_status.recvd_initial_deposition_date 2018-06-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Vicens, Q.' 1 ? 'Mondragon, E.' 2 ? 'Reyes, F.E.' 3 ? 'Berman, J.' 4 ? 'Kaur, H.' 5 ? 'Kells, K.' 6 ? 'Wickens, P.' 7 ? 'Wilson, J.' 8 ? 'Gadwood, R.' 9 ? 'Schostarez, H.' 10 ? 'Suto, R.K.' 11 ? 'Coish, P.' 12 ? 'Blount, K.F.' 13 ? 'Batey, R.T.' 14 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'ACS Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1554-8937 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 2908 _citation.page_last 2919 _citation.title 'Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acschembio.8b00533 _citation.pdbx_database_id_PubMed 30107111 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vicens, Q.' 1 ? primary 'Mondragon, E.' 2 ? primary 'Reyes, F.E.' 3 ? primary 'Coish, P.' 4 ? primary 'Aristoff, P.' 5 ? primary 'Berman, J.' 6 ? primary 'Kaur, H.' 7 ? primary 'Kells, K.W.' 8 ? primary 'Wickens, P.' 9 ? primary 'Wilson, J.' 10 ? primary 'Gadwood, R.C.' 11 ? primary 'Schostarez, H.J.' 12 ? primary 'Suto, R.K.' 13 ? primary 'Blount, K.F.' 14 ? primary 'Batey, R.T.' 15 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6DN2 _cell.details ? _cell.formula_units_Z ? _cell.length_a 71.070 _cell.length_a_esd ? _cell.length_b 71.070 _cell.length_b_esd ? _cell.length_c 140.480 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DN2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA RIBOSWITCH' 17455.389 1 ? ? ? ? 2 polymer syn 'RNA (56-MER)' 18092.771 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 6 ? ? ? ? 4 non-polymer syn '4-{benzyl[2-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)ethyl]amino}butanoic acid' 461.513 1 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 6 water nat water 18.015 9 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU X ? 2 polyribonucleotide no no GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC Y ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 C n 1 6 U n 1 7 U n 1 8 C n 1 9 G n 1 10 G n 1 11 G n 1 12 G n 1 13 C n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 G n 1 20 A n 1 21 A n 1 22 A n 1 23 U n 1 24 U n 1 25 C n 1 26 C n 1 27 C n 1 28 G n 1 29 A n 1 30 C n 1 31 C n 1 32 G n 1 33 G n 1 34 U n 1 35 G n 1 36 G n 1 37 U n 1 38 A n 1 39 U n 1 40 A n 1 41 G n 1 42 U n 1 43 C n 1 44 C n 1 45 A n 1 46 C n 1 47 G n 1 48 A n 1 49 A n 1 50 A n 1 51 G n 1 52 C n 1 53 U n 1 54 U n 2 1 G n 2 2 C n 2 3 U n 2 4 U n 2 5 U n 2 6 G n 2 7 A n 2 8 U n 2 9 U n 2 10 U n 2 11 G n 2 12 G n 2 13 U n 2 14 G n 2 15 A n 2 16 A n 2 17 A n 2 18 U n 2 19 U n 2 20 C n 2 21 C n 2 22 A n 2 23 A n 2 24 A n 2 25 A n 2 26 C n 2 27 C n 2 28 G n 2 29 A n 2 30 C n 2 31 A n 2 32 G n 2 33 U n 2 34 A n 2 35 G n 2 36 A n 2 37 G n 2 38 U n 2 39 C n 2 40 U n 2 41 G n 2 42 G n 2 43 A n 2 44 U n 2 45 G n 2 46 A n 2 47 G n 2 48 A n 2 49 G n 2 50 A n 2 51 A n 2 52 G n 2 53 A n 2 54 U n 2 55 U n 2 56 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 54 'Fusobacterium nucleatum' ? 851 'IN VITRO TRANSCRIBED RNA FROM FUSOBACTERIUM NUCLEATUM IMPX GENE' 2 1 sample 1 56 'Fusobacterium nucleatum' ? 851 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6DN2 6DN2 ? 1 ? 1 2 PDB 6DN2 6DN2 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6DN2 X 1 ? 54 ? 6DN2 1 ? 54 ? 1 54 2 2 6DN2 Y 1 ? 56 ? 6DN2 57 ? 112 ? 57 112 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GZG non-polymer . '4-{benzyl[2-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)ethyl]amino}butanoic acid' ? 'C25 H27 N5 O4' 461.513 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DN2 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.88 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 4000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details MIRRORS _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2009-05-31 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 16.830 _reflns.entry_id 6DN2 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.800 _reflns.d_resolution_low 20.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8864 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0.500 _reflns.percent_possible_obs 83.400 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.100 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.140 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 3.23 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.52 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 54.2 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.266 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 1.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -7.2579 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -7.2579 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 14.5159 _refine.B_iso_max 190.880 _refine.B_iso_mean 76.5200 _refine.B_iso_min 3.000 _refine.correlation_coeff_Fo_to_Fc 0.8900 _refine.correlation_coeff_Fo_to_Fc_free 0.8540 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DN2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.8800 _refine.ls_d_res_low 19.5500 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8313 _refine.ls_number_reflns_R_free 401 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 85.2000 _refine.ls_percent_reflns_R_free 4.8200 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2020 _refine.ls_R_factor_R_free 0.2570 _refine.ls_R_factor_R_free_error 0.0000 _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1990 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3F4E _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI 0.4330 _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 6DN2 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.410 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.8800 _refine_hist.d_res_low 19.5500 _refine_hist.pdbx_number_atoms_ligand 41 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 2383 _refine_hist.pdbx_number_residues_total 109 _refine_hist.pdbx_B_iso_mean_ligand 42.25 _refine_hist.pdbx_B_iso_mean_solvent 12.97 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2333 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? ? ? 544 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? ? ? t_trig_c_planes ? ? 'X-RAY DIFFRACTION' ? ? ? 144 ? t_gen_planes 5.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 2649 ? t_it 20.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 0 ? t_nbd 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 436 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 2738 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 0.010 ? 2649 ? t_bond_d 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 0.710 ? 4123 ? t_angle_deg 2.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 23.820 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.8800 _refine_ls_shell.d_res_low 3.2200 _refine_ls_shell.number_reflns_all 1713 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 102 _refine_ls_shell.number_reflns_R_work 1611 _refine_ls_shell.percent_reflns_obs 62.3500 _refine_ls_shell.percent_reflns_R_free 5.9500 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3390 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.3040 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6DN2 _struct.title 'CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1354 SPLIT RNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DN2 _struct_keywords.text 'FMN, RIBOSWITCH, TRANSCRIPTION, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 5 ? K N N 6 ? L N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 40 OP2 ? ? ? 1_555 C MG . MG ? ? X A 40 X MG 101 1_555 ? ? ? ? ? ? ? 2.921 ? ? metalc2 metalc ? ? A A 49 OP2 ? ? ? 1_555 D MG . MG ? ? X A 49 X MG 102 1_555 ? ? ? ? ? ? ? 2.737 ? ? metalc3 metalc ? ? B U 33 O4 ? ? ? 1_555 H MG . MG ? ? Y U 89 Y MG 202 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc4 metalc ? ? B A 36 OP2 ? ? ? 1_555 H MG . MG ? ? Y A 92 Y MG 202 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc5 metalc ? ? B G 41 O6 ? ? ? 1_555 J K . K ? ? Y G 97 Y K 204 1_555 ? ? ? ? ? ? ? 3.037 ? ? metalc6 metalc ? ? I GZG . O2 ? ? ? 1_555 J K . K ? ? Y GZG 203 Y K 204 1_555 ? ? ? ? ? ? ? 3.391 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 56 N3 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 56 O2 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 56 N4 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B U 55 O2 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 B U 55 N3 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 54 N3 ? ? X A 3 Y U 110 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog7 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 53 N1 ? ? X U 4 Y A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 53 N6 ? ? X U 4 Y A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 52 N1 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 52 O6 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 52 N2 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 51 N1 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 51 N6 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 50 N1 ? ? X U 7 Y A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 50 N6 ? ? X U 7 Y A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 49 N1 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 49 O6 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 49 N2 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 N2 ? ? ? 1_555 B A 48 N7 ? ? X G 9 Y A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog20 hydrog ? ? A G 9 N3 ? ? ? 1_555 B A 48 N6 ? ? X G 9 Y A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 47 N2 ? ? X G 10 X G 47 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog22 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 31 O2 ? ? X G 11 X C 31 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog23 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 32 N3 ? ? X G 11 X G 32 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog24 hydrog ? ? A G 12 N2 ? ? ? 1_555 B G 37 N3 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog25 hydrog ? ? A G 12 N3 ? ? ? 1_555 B G 37 N2 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog26 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 28 N1 ? ? X C 13 X G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog27 hydrog ? ? A A 14 N6 ? ? ? 1_555 A G 28 N3 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog28 hydrog ? ? A A 14 N7 ? ? ? 1_555 A G 28 N2 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 26 N3 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 26 O2 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 26 N4 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 22 N7 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog39 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 22 N6 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog40 hydrog ? ? A G 19 N2 ? ? ? 1_555 B A 34 N7 ? ? X G 19 Y A 90 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog41 hydrog ? ? A A 29 N1 ? ? ? 1_555 B U 38 N3 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A A 29 N6 ? ? ? 1_555 B U 38 O4 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 30 N3 ? ? ? 1_555 B G 37 N1 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 30 N4 ? ? ? 1_555 B G 37 O6 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 30 O2 ? ? ? 1_555 B G 37 N2 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 31 N3 ? ? ? 1_555 B G 28 N1 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 31 N4 ? ? ? 1_555 B G 28 O6 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 31 O2 ? ? ? 1_555 B G 28 N2 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 32 N1 ? ? ? 1_555 B C 27 N3 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 32 N2 ? ? ? 1_555 B C 27 O2 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 32 O6 ? ? ? 1_555 B C 27 N4 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 46 N3 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 46 O2 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 46 N4 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 33 N2 ? ? ? 1_555 B A 48 N3 ? ? X G 33 Y A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog56 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 45 N1 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 45 N6 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 44 N3 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 44 O2 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 44 N4 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 40 N7 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog65 hydrog ? ? A U 37 O2 ? ? ? 1_555 A A 40 N6 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog66 hydrog ? ? A A 38 N6 ? ? ? 1_555 B G 14 N3 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog67 hydrog ? ? A A 38 N7 ? ? ? 1_555 B G 14 N2 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog68 hydrog ? ? A G 41 N2 ? ? ? 1_555 B A 7 N3 ? ? X G 41 Y A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog69 hydrog ? ? A G 41 N1 ? ? ? 1_555 B C 26 N3 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 41 N2 ? ? ? 1_555 B C 26 O2 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 41 O6 ? ? ? 1_555 B C 26 N4 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 42 N3 ? ? ? 1_555 B A 25 N1 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 42 O4 ? ? ? 1_555 B A 25 N6 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 48 N6 ? ? ? 1_555 B U 5 O2 ? ? X A 48 Y U 61 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog75 hydrog ? ? A A 49 N6 ? ? ? 1_555 B U 4 O2 ? ? X A 49 Y U 60 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog76 hydrog ? ? A A 50 N1 ? ? ? 1_555 B U 3 N3 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A A 50 N6 ? ? ? 1_555 B U 3 O4 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 51 N1 ? ? ? 1_555 B C 2 N3 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 51 N2 ? ? ? 1_555 B C 2 O2 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 51 O6 ? ? ? 1_555 B C 2 N4 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 52 N3 ? ? ? 1_555 B G 1 N1 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 52 N4 ? ? ? 1_555 B G 1 O6 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 52 O2 ? ? ? 1_555 B G 1 N2 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 27 O2 ? ? Y G 62 Y C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog85 hydrog ? ? B G 6 N2 ? ? ? 1_555 B G 28 N3 ? ? Y G 62 Y G 84 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog86 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 24 N1 ? ? Y U 64 Y A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 24 N6 ? ? Y U 64 Y A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 23 N1 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 23 N6 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 22 N1 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 22 N6 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 21 N3 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 21 O2 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 21 N4 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 20 N3 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 20 O2 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 20 N4 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 17 N7 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog99 hydrog ? ? B U 13 O2 ? ? ? 1_555 B A 17 N6 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog100 hydrog ? ? B A 29 N1 ? ? ? 1_555 B G 42 N1 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog101 hydrog ? ? B A 29 N6 ? ? ? 1_555 B G 42 O6 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog102 hydrog ? ? B C 30 N3 ? ? ? 1_555 B G 41 N1 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B C 30 N4 ? ? ? 1_555 B G 41 O6 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B C 30 O2 ? ? ? 1_555 B G 41 N2 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B A 31 N1 ? ? ? 1_555 B U 40 N3 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B A 31 N6 ? ? ? 1_555 B U 40 O4 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 39 N3 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B G 32 N2 ? ? ? 1_555 B C 39 O2 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 32 O6 ? ? ? 1_555 B C 39 N4 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B U 33 N3 ? ? ? 1_555 B A 36 N7 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog111 hydrog ? ? B U 33 O2 ? ? ? 1_555 B A 36 N6 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X MG 101 ? 3 'binding site for residue MG X 101' AC2 Software X MG 102 ? 2 'binding site for residue MG X 102' AC3 Software X MG 103 ? 1 'binding site for residue MG X 103' AC4 Software Y MG 201 ? 2 'binding site for residue MG Y 201' AC5 Software Y MG 202 ? 2 'binding site for residue MG Y 202' AC6 Software Y GZG 203 ? 13 'binding site for residue GZG Y 203' AC7 Software Y K 204 ? 2 'binding site for residue K Y 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 G A 36 ? G X 36 . ? 1_555 ? 2 AC1 3 U A 37 ? U X 37 . ? 1_555 ? 3 AC1 3 A A 40 ? A X 40 . ? 1_555 ? 4 AC2 2 A A 49 ? A X 49 . ? 1_555 ? 5 AC2 2 A A 50 ? A X 50 . ? 1_555 ? 6 AC3 1 A A 38 ? A X 38 . ? 6_555 ? 7 AC4 2 G B 28 ? G Y 84 . ? 1_555 ? 8 AC4 2 G B 37 ? G Y 93 . ? 1_555 ? 9 AC5 2 U B 33 ? U Y 89 . ? 1_555 ? 10 AC5 2 A B 36 ? A Y 92 . ? 1_555 ? 11 AC6 13 G A 10 ? G X 10 . ? 1_555 ? 12 AC6 13 G A 11 ? G X 11 . ? 1_555 ? 13 AC6 13 G A 12 ? G X 12 . ? 1_555 ? 14 AC6 13 G A 32 ? G X 32 . ? 1_555 ? 15 AC6 13 A A 48 ? A X 48 . ? 1_555 ? 16 AC6 13 A A 49 ? A X 49 . ? 1_555 ? 17 AC6 13 U B 5 ? U Y 61 . ? 1_555 ? 18 AC6 13 G B 6 ? G Y 62 . ? 1_555 ? 19 AC6 13 G B 28 ? G Y 84 . ? 1_555 ? 20 AC6 13 A B 29 ? A Y 85 . ? 1_555 ? 21 AC6 13 G B 42 ? G Y 98 . ? 1_555 ? 22 AC6 13 A B 43 ? A Y 99 . ? 1_555 ? 23 AC6 13 K J . ? K Y 204 . ? 1_555 ? 24 AC7 2 G B 41 ? G Y 97 . ? 1_555 ? 25 AC7 2 GZG I . ? GZG Y 203 . ? 1_555 ? # _atom_sites.entry_id 6DN2 _atom_sites.fract_transf_matrix[1][1] 0.014071 _atom_sites.fract_transf_matrix[1][2] 0.008124 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016247 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007118 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G X . n A 1 2 G 2 2 2 G G X . n A 1 3 A 3 3 3 A A X . n A 1 4 U 4 4 4 U U X . n A 1 5 C 5 5 5 C C X . n A 1 6 U 6 6 6 U U X . n A 1 7 U 7 7 7 U U X . n A 1 8 C 8 8 8 C C X . n A 1 9 G 9 9 9 G G X . n A 1 10 G 10 10 10 G G X . n A 1 11 G 11 11 11 G G X . n A 1 12 G 12 12 12 G G X . n A 1 13 C 13 13 13 C C X . n A 1 14 A 14 14 14 A A X . n A 1 15 G 15 15 15 G G X . n A 1 16 G 16 16 16 G G X . n A 1 17 G 17 17 17 G G X . n A 1 18 U 18 18 18 U U X . n A 1 19 G 19 19 19 G G X . n A 1 20 A 20 20 20 A A X . n A 1 21 A 21 21 21 A A X . n A 1 22 A 22 22 22 A A X . n A 1 23 U 23 23 23 U U X . n A 1 24 U 24 24 24 U U X . n A 1 25 C 25 25 25 C C X . n A 1 26 C 26 26 26 C C X . n A 1 27 C 27 27 27 C C X . n A 1 28 G 28 28 28 G G X . n A 1 29 A 29 29 29 A A X . n A 1 30 C 30 30 30 C C X . n A 1 31 C 31 31 31 C C X . n A 1 32 G 32 32 32 G G X . n A 1 33 G 33 33 33 G G X . n A 1 34 U 34 34 34 U U X . n A 1 35 G 35 35 35 G G X . n A 1 36 G 36 36 36 G G X . n A 1 37 U 37 37 37 U U X . n A 1 38 A 38 38 38 A A X . n A 1 39 U 39 39 39 U U X . n A 1 40 A 40 40 40 A A X . n A 1 41 G 41 41 41 G G X . n A 1 42 U 42 42 42 U U X . n A 1 43 C 43 43 43 C C X . n A 1 44 C 44 44 44 C C X . n A 1 45 A 45 45 45 A A X . n A 1 46 C 46 46 46 C C X . n A 1 47 G 47 47 47 G G X . n A 1 48 A 48 48 48 A A X . n A 1 49 A 49 49 49 A A X . n A 1 50 A 50 50 50 A A X . n A 1 51 G 51 51 51 G G X . n A 1 52 C 52 52 52 C C X . n A 1 53 U 53 53 53 U U X . n A 1 54 U 54 54 ? ? ? X . n B 2 1 G 1 57 57 G G Y . n B 2 2 C 2 58 58 C C Y . n B 2 3 U 3 59 59 U U Y . n B 2 4 U 4 60 60 U U Y . n B 2 5 U 5 61 61 U U Y . n B 2 6 G 6 62 62 G G Y . n B 2 7 A 7 63 63 A A Y . n B 2 8 U 8 64 64 U U Y . n B 2 9 U 9 65 65 U U Y . n B 2 10 U 10 66 66 U U Y . n B 2 11 G 11 67 67 G G Y . n B 2 12 G 12 68 68 G G Y . n B 2 13 U 13 69 69 U U Y . n B 2 14 G 14 70 70 G G Y . n B 2 15 A 15 71 71 A A Y . n B 2 16 A 16 72 72 A A Y . n B 2 17 A 17 73 73 A A Y . n B 2 18 U 18 74 74 U U Y . n B 2 19 U 19 75 75 U U Y . n B 2 20 C 20 76 76 C C Y . n B 2 21 C 21 77 77 C C Y . n B 2 22 A 22 78 78 A A Y . n B 2 23 A 23 79 79 A A Y . n B 2 24 A 24 80 80 A A Y . n B 2 25 A 25 81 81 A A Y . n B 2 26 C 26 82 82 C C Y . n B 2 27 C 27 83 83 C C Y . n B 2 28 G 28 84 84 G G Y . n B 2 29 A 29 85 85 A A Y . n B 2 30 C 30 86 86 C C Y . n B 2 31 A 31 87 87 A A Y . n B 2 32 G 32 88 88 G G Y . n B 2 33 U 33 89 89 U U Y . n B 2 34 A 34 90 90 A A Y . n B 2 35 G 35 91 91 G G Y . n B 2 36 A 36 92 92 A A Y . n B 2 37 G 37 93 93 G G Y . n B 2 38 U 38 94 94 U U Y . n B 2 39 C 39 95 95 C C Y . n B 2 40 U 40 96 96 U U Y . n B 2 41 G 41 97 97 G G Y . n B 2 42 G 42 98 98 G G Y . n B 2 43 A 43 99 99 A A Y . n B 2 44 U 44 100 100 U U Y . n B 2 45 G 45 101 101 G G Y . n B 2 46 A 46 102 102 A A Y . n B 2 47 G 47 103 103 G G Y . n B 2 48 A 48 104 104 A A Y . n B 2 49 G 49 105 105 G G Y . n B 2 50 A 50 106 106 A A Y . n B 2 51 A 51 107 107 A A Y . n B 2 52 G 52 108 108 G G Y . n B 2 53 A 53 109 109 A A Y . n B 2 54 U 54 110 110 U U Y . n B 2 55 U 55 111 111 U U Y . n B 2 56 C 56 112 112 C C Y . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 101 1 MG MG X . D 3 MG 1 102 2 MG MG X . E 3 MG 1 103 3 MG MG X . F 3 MG 1 104 4 MG MG X . G 3 MG 1 201 5 MG MG Y . H 3 MG 1 202 6 MG MG Y . I 4 GZG 1 203 1 GZG X13 Y . J 5 K 1 204 1 K K Y . K 6 HOH 1 201 4 HOH HOH X . K 6 HOH 2 202 3 HOH HOH X . K 6 HOH 3 203 2 HOH HOH X . K 6 HOH 4 204 5 HOH HOH X . L 6 HOH 1 301 8 HOH HOH Y . L 6 HOH 2 302 9 HOH HOH Y . L 6 HOH 3 303 6 HOH HOH Y . L 6 HOH 4 304 1 HOH HOH Y . L 6 HOH 5 305 7 HOH HOH Y . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6370 ? 1 MORE -53 ? 1 'SSA (A^2)' 15960 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? B U 33 ? Y U 89 ? 1_555 MG ? H MG . ? Y MG 202 ? 1_555 OP2 ? B A 36 ? Y A 92 ? 1_555 77.8 ? 2 O6 ? B G 41 ? Y G 97 ? 1_555 K ? J K . ? Y K 204 ? 1_555 O2 ? I GZG . ? Y GZG 203 ? 1_555 99.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-09-05 2 'Structure model' 1 1 2018-10-03 3 'Structure model' 1 2 2018-10-31 4 'Structure model' 1 3 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.title' 2 3 'Structure model' '_citation.journal_volume' 3 3 'Structure model' '_citation.page_first' 4 3 'Structure model' '_citation.page_last' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 8.8277 -20.9984 8.1085 -0.2791 -0.1638 0.2490 0.0276 -0.0457 -0.0245 4.4983 2.2960 3.0779 0.3755 -1.0869 0.7406 0.1437 0.0165 -0.1602 0.1286 -0.5610 -0.3257 -0.1974 -0.2428 0.0024 'X-RAY DIFFRACTION' 2 ? refined 12.5496 -17.6279 6.5081 -0.2565 -0.2023 0.0679 -0.0355 0.0246 0.1031 5.6623 4.1258 2.1560 1.1873 0.2321 1.2740 0.2042 0.0127 -0.2170 0.1994 -0.5101 -0.3431 -0.5666 -0.4369 0.1501 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 X 1 X 53 '{ X|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 Y 57 Y 112 '{ Y|* }' ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.3 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id X _pdbx_unobs_or_zero_occ_residues.auth_comp_id U _pdbx_unobs_or_zero_occ_residues.auth_seq_id 54 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id U _pdbx_unobs_or_zero_occ_residues.label_seq_id 54 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GZG C4 C N N 111 GZG C5 C N N 112 GZG C6 C Y N 113 GZG C7 C Y N 114 GZG C8 C N N 115 GZG C9 C N N 116 GZG C10 C N N 117 GZG C11 C N N 118 GZG C12 C Y N 119 GZG C13 C Y N 120 GZG C14 C N N 121 GZG C15 C Y N 122 GZG C16 C N N 123 GZG N1 N N N 124 GZG C19 C Y N 125 GZG O1 O N N 126 GZG O2 O N N 127 GZG C20 C Y N 128 GZG C17 C Y N 129 GZG C18 C N N 130 GZG O O N N 131 GZG C C N N 132 GZG C1 C N N 133 GZG C2 C N N 134 GZG C3 C N N 135 GZG N N N N 136 GZG C24 C Y N 137 GZG C23 C Y N 138 GZG C22 C Y N 139 GZG C21 C Y N 140 GZG N2 N N N 141 GZG N4 N N N 142 GZG N3 N N N 143 GZG O3 O N N 144 GZG H1 H N N 145 GZG H2 H N N 146 GZG H3 H N N 147 GZG H4 H N N 148 GZG H5 H N N 149 GZG H6 H N N 150 GZG H7 H N N 151 GZG H8 H N N 152 GZG H9 H N N 153 GZG H10 H N N 154 GZG H11 H N N 155 GZG H12 H N N 156 GZG H13 H N N 157 GZG H14 H N N 158 GZG H15 H N N 159 GZG H16 H N N 160 GZG H17 H N N 161 GZG H18 H N N 162 GZG H19 H N N 163 GZG H20 H N N 164 GZG H21 H N N 165 GZG H22 H N N 166 GZG H24 H N N 167 GZG H25 H N N 168 GZG H26 H N N 169 GZG H27 H N N 170 GZG H28 H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 K K K N N 175 MG MG MG N N 176 U OP3 O N N 177 U P P N N 178 U OP1 O N N 179 U OP2 O N N 180 U "O5'" O N N 181 U "C5'" C N N 182 U "C4'" C N R 183 U "O4'" O N N 184 U "C3'" C N S 185 U "O3'" O N N 186 U "C2'" C N R 187 U "O2'" O N N 188 U "C1'" C N R 189 U N1 N N N 190 U C2 C N N 191 U O2 O N N 192 U N3 N N N 193 U C4 C N N 194 U O4 O N N 195 U C5 C N N 196 U C6 C N N 197 U HOP3 H N N 198 U HOP2 H N N 199 U "H5'" H N N 200 U "H5''" H N N 201 U "H4'" H N N 202 U "H3'" H N N 203 U "HO3'" H N N 204 U "H2'" H N N 205 U "HO2'" H N N 206 U "H1'" H N N 207 U H3 H N N 208 U H5 H N N 209 U H6 H N N 210 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GZG C14 C13 sing N N 116 GZG C13 C12 doub Y N 117 GZG C13 C15 sing Y N 118 GZG C16 C15 sing N N 119 GZG C12 C7 sing Y N 120 GZG C15 C17 doub Y N 121 GZG C7 N2 sing N N 122 GZG C7 C6 doub Y N 123 GZG C17 C6 sing Y N 124 GZG N2 C8 doub N N 125 GZG C6 N1 sing N N 126 GZG O3 C9 doub N N 127 GZG C8 C9 sing N N 128 GZG C8 C11 sing N N 129 GZG C9 N3 sing N N 130 GZG N1 C11 sing N N 131 GZG N1 C5 sing N N 132 GZG C11 N4 doub N N 133 GZG C5 C4 sing N N 134 GZG N3 C10 sing N N 135 GZG C4 N sing N N 136 GZG N4 C10 sing N N 137 GZG C20 C21 doub Y N 138 GZG C20 C19 sing Y N 139 GZG C21 C22 sing Y N 140 GZG C10 O2 doub N N 141 GZG C18 N sing N N 142 GZG C18 C19 sing N N 143 GZG C2 C1 sing N N 144 GZG C2 C3 sing N N 145 GZG C1 C sing N N 146 GZG N C3 sing N N 147 GZG C19 C24 doub Y N 148 GZG C22 C23 doub Y N 149 GZG O1 C doub N N 150 GZG C O sing N N 151 GZG C24 C23 sing Y N 152 GZG C4 H1 sing N N 153 GZG C4 H2 sing N N 154 GZG C5 H3 sing N N 155 GZG C5 H4 sing N N 156 GZG C12 H5 sing N N 157 GZG C14 H6 sing N N 158 GZG C14 H7 sing N N 159 GZG C14 H8 sing N N 160 GZG C16 H9 sing N N 161 GZG C16 H10 sing N N 162 GZG C16 H11 sing N N 163 GZG C20 H12 sing N N 164 GZG C17 H13 sing N N 165 GZG C18 H14 sing N N 166 GZG C18 H15 sing N N 167 GZG O H16 sing N N 168 GZG C1 H17 sing N N 169 GZG C1 H18 sing N N 170 GZG C2 H19 sing N N 171 GZG C2 H20 sing N N 172 GZG C3 H21 sing N N 173 GZG C3 H22 sing N N 174 GZG C24 H24 sing N N 175 GZG C23 H25 sing N N 176 GZG C22 H26 sing N N 177 GZG C21 H27 sing N N 178 GZG N3 H28 sing N N 179 HOH O H1 sing N N 180 HOH O H2 sing N N 181 U OP3 P sing N N 182 U OP3 HOP3 sing N N 183 U P OP1 doub N N 184 U P OP2 sing N N 185 U P "O5'" sing N N 186 U OP2 HOP2 sing N N 187 U "O5'" "C5'" sing N N 188 U "C5'" "C4'" sing N N 189 U "C5'" "H5'" sing N N 190 U "C5'" "H5''" sing N N 191 U "C4'" "O4'" sing N N 192 U "C4'" "C3'" sing N N 193 U "C4'" "H4'" sing N N 194 U "O4'" "C1'" sing N N 195 U "C3'" "O3'" sing N N 196 U "C3'" "C2'" sing N N 197 U "C3'" "H3'" sing N N 198 U "O3'" "HO3'" sing N N 199 U "C2'" "O2'" sing N N 200 U "C2'" "C1'" sing N N 201 U "C2'" "H2'" sing N N 202 U "O2'" "HO2'" sing N N 203 U "C1'" N1 sing N N 204 U "C1'" "H1'" sing N N 205 U N1 C2 sing N N 206 U N1 C6 sing N N 207 U C2 O2 doub N N 208 U C2 N3 sing N N 209 U N3 C4 sing N N 210 U N3 H3 sing N N 211 U C4 O4 doub N N 212 U C4 C5 sing N N 213 U C5 C6 doub N N 214 U C5 H5 sing N N 215 U C6 H6 sing N N 216 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6DN2 'double helix' 6DN2 'a-form double helix' 6DN2 'hairpin loop' 6DN2 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 56 1_555 -0.507 -0.207 0.387 1.919 -10.057 -7.539 1 X_G1:C112_Y X 1 ? Y 112 ? 19 1 1 A G 2 1_555 B U 55 1_555 -1.466 -0.403 -0.472 5.788 -22.465 -8.470 2 X_G2:U111_Y X 2 ? Y 111 ? 28 1 1 A A 3 1_555 B U 54 1_555 1.029 0.329 0.704 14.116 -21.993 18.929 3 X_A3:U110_Y X 3 ? Y 110 ? ? 1 1 A U 4 1_555 B A 53 1_555 0.009 -0.032 0.835 -5.238 -18.816 10.276 4 X_U4:A109_Y X 4 ? Y 109 ? 20 1 1 A C 5 1_555 B G 52 1_555 0.438 0.076 0.223 2.336 -18.036 7.855 5 X_C5:G108_Y X 5 ? Y 108 ? 19 1 1 A U 6 1_555 B A 51 1_555 0.736 -0.108 0.177 -4.183 -21.946 4.556 6 X_U6:A107_Y X 6 ? Y 107 ? 20 1 1 A U 7 1_555 B A 50 1_555 0.729 -0.215 0.350 1.508 -13.839 4.387 7 X_U7:A106_Y X 7 ? Y 106 ? 20 1 1 A C 8 1_555 B G 49 1_555 -0.008 -0.061 0.188 4.579 -12.886 0.793 8 X_C8:G105_Y X 8 ? Y 105 ? 19 1 1 A G 9 1_555 B A 48 1_555 6.854 -4.189 0.307 -18.860 -41.558 -0.407 9 X_G9:A104_Y X 9 ? Y 104 ? 11 10 1 A A 38 1_555 B G 14 1_555 -7.181 -4.521 0.637 -16.824 22.229 5.024 10 X_A38:G70_Y X 38 ? Y 70 ? 11 10 1 B A 17 1_555 B U 13 1_555 -4.383 -1.795 1.030 -0.498 17.703 -84.570 11 Y_A73:U69_Y Y 73 ? Y 69 ? 24 4 1 B C 20 1_555 B G 12 1_555 -0.307 0.160 -0.318 22.666 -7.518 -0.419 12 Y_C76:G68_Y Y 76 ? Y 68 ? 19 1 1 B C 21 1_555 B G 11 1_555 -0.689 -0.223 -0.238 9.339 -17.087 0.184 13 Y_C77:G67_Y Y 77 ? Y 67 ? 19 1 1 B A 22 1_555 B U 10 1_555 0.210 0.202 0.318 -6.967 -15.888 10.999 14 Y_A78:U66_Y Y 78 ? Y 66 ? 20 1 1 B A 23 1_555 B U 9 1_555 0.883 -0.134 -0.237 -1.027 -23.110 1.778 15 Y_A79:U65_Y Y 79 ? Y 65 ? 20 1 1 B A 24 1_555 B U 8 1_555 -0.149 0.014 0.435 -0.279 0.929 18.897 16 Y_A80:U64_Y Y 80 ? Y 64 ? 20 1 1 B A 25 1_555 A U 42 1_555 -0.036 -0.062 -0.250 1.019 0.578 -6.391 17 Y_A81:U42_X Y 81 ? X 42 ? 20 1 1 B C 26 1_555 A G 41 1_555 0.770 -0.006 -0.131 -1.041 -21.387 11.194 18 Y_C82:G41_X Y 82 ? X 41 ? 19 1 1 B C 27 1_555 A G 32 1_555 0.443 -0.102 0.284 -12.759 -2.651 -3.607 19 Y_C83:G32_X Y 83 ? X 32 ? 19 1 1 B G 28 1_555 A C 31 1_555 0.526 0.307 0.726 17.780 -12.770 6.105 20 Y_G84:C31_X Y 84 ? X 31 ? 19 1 1 B G 37 1_555 A C 30 1_555 -0.375 -0.203 -0.097 7.830 -16.813 2.797 21 Y_G93:C30_X Y 93 ? X 30 ? 19 1 1 B U 38 1_555 A A 29 1_555 -0.311 0.037 -0.771 15.767 -9.215 -8.137 22 Y_U94:A29_X Y 94 ? X 29 ? 20 1 1 A C 13 1_555 A G 28 1_555 3.353 0.321 1.003 -18.684 -5.594 36.977 23 X_C13:G28_X X 13 ? X 28 ? ? 5 1 A G 15 1_555 A C 27 1_555 0.786 0.184 0.292 -3.886 -6.584 7.191 24 X_G15:C27_X X 15 ? X 27 ? 19 1 1 A G 16 1_555 A C 26 1_555 0.207 -0.070 -0.324 -10.294 -26.670 8.139 25 X_G16:C26_X X 16 ? X 26 ? 19 1 1 A G 17 1_555 A C 25 1_555 -0.342 -0.138 -0.343 -24.044 7.689 -3.310 26 X_G17:C25_X X 17 ? X 25 ? 19 1 1 A U 18 1_555 A A 22 1_555 4.321 -2.132 0.716 7.484 19.829 -96.307 27 X_U18:A22_X X 18 ? X 22 ? 24 4 1 A G 19 1_555 B A 34 1_555 6.892 -5.177 0.734 16.773 24.124 0.316 28 X_G19:A90_Y X 19 ? Y 90 ? ? 10 1 A A 40 1_555 A U 37 1_555 -4.498 -2.618 1.296 -0.379 12.520 -87.481 29 X_A40:U37_X X 40 ? X 37 ? 24 4 1 A C 43 1_555 A G 36 1_555 -0.003 -0.167 0.684 19.419 -5.286 5.042 30 X_C43:G36_X X 43 ? X 36 ? 19 1 1 A C 44 1_555 A G 35 1_555 -0.782 -0.111 -1.175 30.091 -16.376 -1.145 31 X_C44:G35_X X 44 ? X 35 ? 19 1 1 A A 45 1_555 A U 34 1_555 0.662 -0.006 -0.275 -20.951 -15.650 6.282 32 X_A45:U34_X X 45 ? X 34 ? 20 1 1 A C 46 1_555 A G 33 1_555 0.602 -0.069 0.726 -13.207 -12.060 2.399 33 X_C46:G33_X X 46 ? X 33 ? 19 1 1 A G 47 1_555 A G 10 1_555 5.780 1.137 -0.021 -20.469 -1.561 -61.984 34 X_G47:G10_X X 47 ? X 10 ? ? ? 1 A A 48 1_555 B U 5 1_555 -5.333 -3.841 -1.885 32.856 -37.590 -35.526 35 X_A48:U61_Y X 48 ? Y 61 ? ? ? 1 A A 49 1_555 B U 4 1_555 -3.489 -0.055 0.212 6.350 -2.461 13.348 36 X_A49:U60_Y X 49 ? Y 60 ? ? ? 1 A A 50 1_555 B U 3 1_555 0.813 -0.124 -0.566 -0.379 -14.546 1.379 37 X_A50:U59_Y X 50 ? Y 59 ? 20 1 1 A G 51 1_555 B C 2 1_555 -0.931 -0.423 0.017 -19.435 -18.323 -1.901 38 X_G51:C58_Y X 51 ? Y 58 ? 19 1 1 A C 52 1_555 B G 1 1_555 1.600 -0.342 0.628 -9.065 -10.266 9.039 39 X_C52:G57_Y X 52 ? Y 57 ? 19 1 1 B A 29 1_555 B G 42 1_555 0.919 1.217 -0.454 1.316 -22.630 -19.164 40 Y_A85:G98_Y Y 85 ? Y 98 ? 8 1 1 B C 30 1_555 B G 41 1_555 1.134 0.082 0.269 19.380 -22.307 9.032 41 Y_C86:G97_Y Y 86 ? Y 97 ? 19 1 1 B A 31 1_555 B U 40 1_555 -1.259 -0.300 -0.123 -8.487 -30.522 10.209 42 Y_A87:U96_Y Y 87 ? Y 96 ? 20 1 1 B G 32 1_555 B C 39 1_555 -0.017 -0.238 0.329 -14.989 -13.277 -4.681 43 Y_G88:C95_Y Y 88 ? Y 95 ? 19 1 1 B U 33 1_555 B A 36 1_555 4.384 -2.503 -0.390 12.014 -0.770 -94.524 44 Y_U89:A92_Y Y 89 ? Y 92 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 56 1_555 A G 2 1_555 B U 55 1_555 0.089 -1.207 3.274 3.402 7.006 29.604 -3.621 0.479 2.910 13.421 -6.517 30.590 1 XX_G1G2:U111C112_YY X 1 ? Y 112 ? X 2 ? Y 111 ? 1 A G 2 1_555 B U 55 1_555 A A 3 1_555 B U 54 1_555 0.835 -0.937 2.961 -9.528 7.719 42.095 -1.888 -1.898 2.522 10.483 12.939 43.767 2 XX_G2A3:U110U111_YY X 2 ? Y 111 ? X 3 ? Y 110 ? 1 A A 3 1_555 B U 54 1_555 A U 4 1_555 B A 53 1_555 -0.403 -1.960 3.652 -1.425 6.066 32.779 -4.490 0.451 3.261 10.630 2.497 33.350 3 XX_A3U4:A109U110_YY X 3 ? Y 110 ? X 4 ? Y 109 ? 1 A U 4 1_555 B A 53 1_555 A C 5 1_555 B G 52 1_555 0.174 -1.637 2.868 5.362 3.703 30.592 -3.635 0.543 2.648 6.920 -10.020 31.262 4 XX_U4C5:G108A109_YY X 4 ? Y 109 ? X 5 ? Y 108 ? 1 A C 5 1_555 B G 52 1_555 A U 6 1_555 B A 51 1_555 -0.463 -0.917 3.409 2.377 6.748 34.049 -2.577 1.141 3.137 11.368 -4.005 34.770 5 XX_C5U6:A107G108_YY X 5 ? Y 108 ? X 6 ? Y 107 ? 1 A U 6 1_555 B A 51 1_555 A U 7 1_555 B A 50 1_555 -0.079 -1.088 3.057 -3.869 5.205 28.996 -3.116 -0.584 2.810 10.234 7.607 29.697 6 XX_U6U7:A106A107_YY X 6 ? Y 107 ? X 7 ? Y 106 ? 1 A U 7 1_555 B A 50 1_555 A C 8 1_555 B G 49 1_555 -0.410 -1.790 2.967 0.430 2.938 30.060 -3.961 0.863 2.777 5.648 -0.827 30.203 7 XX_U7C8:G105A106_YY X 7 ? Y 106 ? X 8 ? Y 105 ? 1 A C 8 1_555 B G 49 1_555 A G 9 1_555 B A 48 1_555 -1.801 -0.321 4.215 7.982 15.941 59.312 -1.245 2.223 3.780 15.726 -7.875 61.699 8 XX_C8G9:A104G105_YY X 8 ? Y 105 ? X 9 ? Y 104 ? 1 A A 38 1_555 B G 14 1_555 B A 17 1_555 B U 13 1_555 -1.166 -0.521 2.704 -3.392 -0.415 1.916 -2.328 -26.234 2.387 -7.369 60.278 3.918 9 XY_A38A73:U69G70_YY X 38 ? Y 70 ? Y 73 ? Y 69 ? 1 B A 17 1_555 B U 13 1_555 B C 20 1_555 B G 12 1_555 2.870 -1.469 3.040 4.136 2.494 69.488 -1.371 -2.373 3.138 2.186 -3.625 69.635 10 YY_A73C76:G68U69_YY Y 73 ? Y 69 ? Y 76 ? Y 68 ? 1 B C 20 1_555 B G 12 1_555 B C 21 1_555 B G 11 1_555 -0.238 -1.752 3.444 -3.239 12.332 35.461 -4.277 -0.041 2.717 19.486 5.118 37.615 11 YY_C76C77:G67G68_YY Y 76 ? Y 68 ? Y 77 ? Y 67 ? 1 B C 21 1_555 B G 11 1_555 B A 22 1_555 B U 10 1_555 0.281 -1.133 3.442 -1.690 14.418 37.447 -3.291 -0.602 2.821 21.495 2.520 40.069 12 YY_C77A78:U66G67_YY Y 77 ? Y 67 ? Y 78 ? Y 66 ? 1 B A 22 1_555 B U 10 1_555 B A 23 1_555 B U 9 1_555 -0.475 -1.192 3.156 7.164 7.261 33.111 -3.027 1.807 2.685 12.380 -12.215 34.605 13 YY_A78A79:U65U66_YY Y 78 ? Y 66 ? Y 79 ? Y 65 ? 1 B A 23 1_555 B U 9 1_555 B A 24 1_555 B U 8 1_555 1.253 -0.915 2.986 -4.996 2.487 24.267 -2.766 -4.199 2.575 5.818 11.688 24.891 14 YY_A79A80:U64U65_YY Y 79 ? Y 65 ? Y 80 ? Y 64 ? 1 B A 24 1_555 B U 8 1_555 B A 25 1_555 A U 42 1_555 -0.454 -2.829 3.177 7.213 2.317 25.216 -6.784 2.768 2.679 5.161 -16.066 26.312 15 YY_A80A81:U42U64_XY Y 80 ? Y 64 ? Y 81 ? X 42 ? 1 B A 25 1_555 A U 42 1_555 B C 26 1_555 A G 41 1_555 1.255 -1.540 3.227 1.865 8.961 42.431 -2.911 -1.526 2.909 12.212 -2.541 43.362 16 YY_A81C82:G41U42_XX Y 81 ? X 42 ? Y 82 ? X 41 ? 1 B C 26 1_555 A G 41 1_555 B C 27 1_555 A G 32 1_555 -1.391 -1.272 3.500 -2.899 5.011 30.707 -3.370 2.000 3.370 9.358 5.413 31.236 17 YY_C82C83:G32G41_XX Y 82 ? X 41 ? Y 83 ? X 32 ? 1 B C 27 1_555 A G 32 1_555 B G 28 1_555 A C 31 1_555 0.205 0.248 2.642 -2.461 6.374 33.811 -0.387 -0.656 2.622 10.822 4.179 34.475 18 YY_C83G84:C31G32_XX Y 83 ? X 32 ? Y 84 ? X 31 ? 1 B G 28 1_555 A C 31 1_555 B G 37 1_555 A C 30 1_555 1.023 -2.144 3.294 5.097 14.727 16.924 -9.602 -1.110 1.295 40.560 -14.036 22.968 19 YY_G84G93:C30C31_XX Y 84 ? X 31 ? Y 93 ? X 30 ? 1 B G 37 1_555 A C 30 1_555 B U 38 1_555 A A 29 1_555 -0.969 -1.400 2.897 0.157 3.046 35.743 -2.652 1.593 2.768 4.951 -0.256 35.869 20 YY_G93U94:A29C30_XX Y 93 ? X 30 ? Y 94 ? X 29 ? 1 B U 38 1_555 A A 29 1_555 A C 13 1_555 A G 28 1_555 1.663 -1.568 4.134 -8.753 1.827 53.249 -1.866 -2.494 3.786 2.023 9.688 53.940 21 YX_U94C13:G28A29_XX Y 94 ? X 29 ? X 13 ? X 28 ? 1 A C 13 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -5.891 0.312 2.901 4.718 -4.324 43.451 0.741 8.234 2.241 -5.803 -6.332 43.897 22 XX_C13G15:C27G28_XX X 13 ? X 28 ? X 15 ? X 27 ? 1 A G 15 1_555 A C 27 1_555 A G 16 1_555 A C 26 1_555 0.859 -2.669 3.282 8.441 13.715 23.339 -8.123 -0.119 1.693 29.781 -18.330 28.293 23 XX_G15G16:C26C27_XX X 15 ? X 27 ? X 16 ? X 26 ? 1 A G 16 1_555 A C 26 1_555 A G 17 1_555 A C 25 1_555 -0.590 -1.966 3.260 -2.461 11.944 32.884 -4.891 0.646 2.455 20.251 4.172 35.014 24 XX_G16G17:C25C26_XX X 16 ? X 26 ? X 17 ? X 25 ? 1 A G 17 1_555 A C 25 1_555 A U 18 1_555 A A 22 1_555 -2.825 -1.826 2.767 -0.136 -1.928 76.264 -1.430 2.283 2.810 -1.561 0.110 76.285 25 XX_G17U18:A22C25_XX X 17 ? X 25 ? X 18 ? X 22 ? 1 A U 18 1_555 A A 22 1_555 A G 19 1_555 B A 34 1_555 1.750 -0.552 2.993 0.127 5.230 1.605 -31.979 -17.694 0.391 72.938 -1.773 5.472 26 XX_U18G19:A90A22_YX X 18 ? X 22 ? X 19 ? Y 90 ? 1 A A 40 1_555 A U 37 1_555 A C 43 1_555 A G 36 1_555 1.258 -1.528 2.861 -4.872 5.681 84.846 -1.241 -1.026 2.712 4.203 3.605 85.113 27 XX_A40C43:G36U37_XX X 40 ? X 37 ? X 43 ? X 36 ? 1 A C 43 1_555 A G 36 1_555 A C 44 1_555 A G 35 1_555 -0.832 -1.828 2.790 7.690 5.070 29.054 -4.266 2.776 2.162 9.800 -14.864 30.449 28 XX_C43C44:G35G36_XX X 43 ? X 36 ? X 44 ? X 35 ? 1 A C 44 1_555 A G 35 1_555 A A 45 1_555 A U 34 1_555 0.646 -1.329 4.512 -5.178 23.612 40.197 -4.209 -1.371 3.202 31.188 6.839 46.646 29 XX_C44A45:U34G35_XX X 44 ? X 35 ? X 45 ? X 34 ? 1 A A 45 1_555 A U 34 1_555 A C 46 1_555 A G 33 1_555 -0.264 -1.867 3.074 -3.432 -3.015 30.925 -2.910 -0.142 3.247 -5.616 6.393 31.252 30 XX_A45C46:G33U34_XX X 45 ? X 34 ? X 46 ? X 33 ? 1 A C 46 1_555 A G 33 1_555 A G 47 1_555 A G 10 1_555 -1.238 -2.878 2.615 19.942 3.416 74.138 -2.400 1.437 2.161 2.784 -16.252 76.465 31 XX_C46G47:G10G33_XX X 46 ? X 33 ? X 47 ? X 10 ? 1 A G 47 1_555 A G 10 1_555 A A 48 1_555 B U 5 1_555 4.557 2.349 4.015 -10.224 20.457 2.477 -3.190 -15.966 0.498 75.050 37.509 23.002 32 XX_G47A48:U61G10_YX X 47 ? X 10 ? X 48 ? Y 61 ? 1 A A 48 1_555 B U 5 1_555 A A 49 1_555 B U 4 1_555 1.671 -2.069 4.631 -33.458 32.070 44.551 -3.596 -3.288 1.512 33.542 34.993 63.421 33 XX_A48A49:U60U61_YY X 48 ? Y 61 ? X 49 ? Y 60 ? 1 A A 49 1_555 B U 4 1_555 A A 50 1_555 B U 3 1_555 -0.823 -1.038 3.566 2.409 6.506 46.376 -1.879 1.248 3.355 8.208 -3.039 46.863 34 XX_A49A50:U59U60_YY X 49 ? Y 60 ? X 50 ? Y 59 ? 1 A A 50 1_555 B U 3 1_555 A G 51 1_555 B C 2 1_555 0.043 -2.255 3.426 -3.520 19.091 23.267 -7.470 -0.662 1.241 39.638 7.309 30.216 35 XX_A50G51:C58U59_YY X 50 ? Y 59 ? X 51 ? Y 58 ? 1 A G 51 1_555 B C 2 1_555 A C 52 1_555 B G 1 1_555 0.276 -0.896 3.053 -3.874 4.584 47.990 -1.422 -0.613 2.931 5.610 4.742 48.341 36 XX_G51C52:G57C58_YY X 51 ? Y 58 ? X 52 ? Y 57 ? 1 B A 29 1_555 B G 42 1_555 B C 30 1_555 B G 41 1_555 1.917 -1.142 2.653 -6.162 4.496 33.609 -2.445 -3.945 2.113 7.653 10.490 34.440 37 YY_A85C86:G97G98_YY Y 85 ? Y 98 ? Y 86 ? Y 97 ? 1 B C 30 1_555 B G 41 1_555 B A 31 1_555 B U 40 1_555 -0.344 -1.573 3.404 2.697 20.819 25.939 -5.808 0.998 1.675 39.213 -5.079 33.256 38 YY_C86A87:U96G97_YY Y 86 ? Y 97 ? Y 87 ? Y 96 ? 1 B A 31 1_555 B U 40 1_555 B G 32 1_555 B C 39 1_555 -0.351 -0.934 3.479 -1.479 6.392 42.918 -1.912 0.325 3.323 8.675 2.008 43.394 39 YY_A87G88:C95U96_YY Y 87 ? Y 96 ? Y 88 ? Y 95 ? 1 B G 32 1_555 B C 39 1_555 B U 33 1_555 B A 36 1_555 -1.131 -1.300 2.612 10.818 0.853 78.392 -1.040 1.118 2.453 0.672 -8.521 79.019 40 YY_G88U89:A92C95_YY Y 88 ? Y 95 ? Y 89 ? Y 92 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id GZG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id GZG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 '4-{benzyl[2-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)ethyl]amino}butanoic acid' GZG 5 'POTASSIUM ION' K 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3F4E _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? #