HEADER TRANSFERASE 06-JUN-18 6DNB TITLE CRYSTAL STRUCTURE OF T110A:S256A MUTANT HUMAN GLUTAMATE OXALOACETATE TITLE 2 TRANSAMINASE 1 (GOT1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE, CYTOPLASMIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CASPAT,CYSTEINE AMINOTRANSFERASE,CYTOPLASMIC,CYSTEINE COMPND 5 TRANSAMINASE,CCAT,GLUTAMATE OXALOACETATE TRANSAMINASE 1,TRANSAMINASE COMPND 6 A; COMPND 7 EC: 2.6.1.1,2.6.1.3; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GOT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ASPARTATE AMINOTRANSFERASE, GLUTAMATE OXALOACETATE TRANSAMINASE 1, KEYWDS 2 GOT1, PLP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.ASSAR,M.C.HOLT,A.J.STEIN,L.LAIRSON,C.A.LYSSIOTIS REVDAT 4 11-OCT-23 6DNB 1 REMARK REVDAT 3 05-DEC-18 6DNB 1 JRNL REVDAT 2 21-NOV-18 6DNB 1 JRNL REVDAT 1 14-NOV-18 6DNB 0 JRNL AUTH M.C.HOLT,Z.ASSAR,R.BEHESHTI ZAVAREH,L.LIN,J.ANGLIN, JRNL AUTH 2 O.MASHADOVA,D.HALDAR,E.MULLARKY,D.M.KREMER,L.C.CANTLEY, JRNL AUTH 3 A.C.KIMMELMAN,A.J.STEIN,L.L.LAIRSON,C.A.LYSSIOTIS JRNL TITL BIOCHEMICAL CHARACTERIZATION AND STRUCTURE-BASED MUTATIONAL JRNL TITL 2 ANALYSIS PROVIDE INSIGHT INTO THE BINDING AND MECHANISM OF JRNL TITL 3 ACTION OF NOVEL ASPARTATE AMINOTRANSFERASE INHIBITORS. JRNL REF BIOCHEMISTRY V. 57 6604 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 30365304 JRNL DOI 10.1021/ACS.BIOCHEM.8B00914 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 46568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2464 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3272 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3243 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.242 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3424 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3146 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4652 ; 2.167 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7310 ; 1.202 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 6.505 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;35.829 ;23.804 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 557 ;14.919 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.733 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 506 ; 0.165 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3813 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 727 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1663 ; 2.367 ; 2.208 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1662 ; 2.346 ; 2.205 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2082 ; 3.230 ; 3.306 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2083 ; 3.232 ; 3.309 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1761 ; 3.728 ; 2.666 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1757 ; 3.702 ; 2.666 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2555 ; 5.416 ; 3.837 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4108 ; 7.044 ;28.565 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4108 ; 7.046 ;28.562 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6DNB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46568 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.24 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3II0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 20% W/V/ PEG MME REMARK 280 2,000, 0.2 M TRIMETHYLAMINE N-OXIDE DEHYDRATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.08533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.04267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.06400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.02133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 175.10667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 140.08533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 70.04267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.02133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 105.06400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 175.10667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 296 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 296 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 350 CD1 ILE A 352 1.99 REMARK 500 O1 GOL A 504 O HOH A 601 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C4 PG4 A 501 C4 PG4 A 501 7554 2.09 REMARK 500 OE1 GLN A 12 NE2 GLN A 283 10665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 266 CG GLU A 266 CD 0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 27 CB - CA - C ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG A 86 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 167 NE - CZ - NH1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 167 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 GLU A 266 OE1 - CD - OE2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 305 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 73 151.87 -49.61 REMARK 500 TYR A 161 -71.56 -150.49 REMARK 500 SER A 224 78.77 -113.43 REMARK 500 THR A 295 -143.19 -114.30 REMARK 500 TRP A 296 -80.44 3.66 REMARK 500 SER A 297 109.53 68.38 REMARK 500 ASN A 298 -114.11 -128.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 298 PRO A 299 -45.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 501 REMARK 610 PG4 A 502 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 506 DBREF 6DNB A 3 413 UNP P17174 AATC_HUMAN 3 413 SEQADV 6DNB ALA A 110 UNP P17174 THR 110 ENGINEERED MUTATION SEQADV 6DNB ALA A 256 UNP P17174 SER 256 ENGINEERED MUTATION SEQADV 6DNB ILE A 352 UNP P17174 ASN 352 CONFLICT SEQRES 1 A 411 PRO PRO SER VAL PHE ALA GLU VAL PRO GLN ALA GLN PRO SEQRES 2 A 411 VAL LEU VAL PHE LYS LEU THR ALA ASP PHE ARG GLU ASP SEQRES 3 A 411 PRO ASP PRO ARG LYS VAL ASN LEU GLY VAL GLY ALA TYR SEQRES 4 A 411 ARG THR ASP ASP CYS HIS PRO TRP VAL LEU PRO VAL VAL SEQRES 5 A 411 LYS LYS VAL GLU GLN LYS ILE ALA ASN ASP ASN SER LEU SEQRES 6 A 411 ASN HIS GLU TYR LEU PRO ILE LEU GLY LEU ALA GLU PHE SEQRES 7 A 411 ARG SER CYS ALA SER ARG LEU ALA LEU GLY ASP ASP SER SEQRES 8 A 411 PRO ALA LEU LYS GLU LYS ARG VAL GLY GLY VAL GLN SER SEQRES 9 A 411 LEU GLY GLY ALA GLY ALA LEU ARG ILE GLY ALA ASP PHE SEQRES 10 A 411 LEU ALA ARG TRP TYR ASN GLY THR ASN ASN LYS ASN THR SEQRES 11 A 411 PRO VAL TYR VAL SER SER PRO THR TRP GLU ASN HIS ASN SEQRES 12 A 411 ALA VAL PHE SER ALA ALA GLY PHE LYS ASP ILE ARG SER SEQRES 13 A 411 TYR ARG TYR TRP ASP ALA GLU LYS ARG GLY LEU ASP LEU SEQRES 14 A 411 GLN GLY PHE LEU ASN ASP LEU GLU ASN ALA PRO GLU PHE SEQRES 15 A 411 SER ILE VAL VAL LEU HIS ALA CYS ALA HIS ASN PRO THR SEQRES 16 A 411 GLY ILE ASP PRO THR PRO GLU GLN TRP LYS GLN ILE ALA SEQRES 17 A 411 SER VAL MET LYS HIS ARG PHE LEU PHE PRO PHE PHE ASP SEQRES 18 A 411 SER ALA TYR GLN GLY PHE ALA SER GLY ASN LEU GLU ARG SEQRES 19 A 411 ASP ALA TRP ALA ILE ARG TYR PHE VAL SER GLU GLY PHE SEQRES 20 A 411 GLU PHE PHE CYS ALA GLN ALA PHE SER LYS ASN PHE GLY SEQRES 21 A 411 LEU TYR ASN GLU ARG VAL GLY ASN LEU THR VAL VAL GLY SEQRES 22 A 411 LYS GLU PRO GLU SER ILE LEU GLN VAL LEU SER GLN MET SEQRES 23 A 411 GLU LYS ILE VAL ARG ILE THR TRP SER ASN PRO PRO ALA SEQRES 24 A 411 GLN GLY ALA ARG ILE VAL ALA SER THR LEU SER ASN PRO SEQRES 25 A 411 GLU LEU PHE GLU GLU TRP THR GLY ASN VAL LYS THR MET SEQRES 26 A 411 ALA ASP ARG ILE LEU THR MET ARG SER GLU LEU ARG ALA SEQRES 27 A 411 ARG LEU GLU ALA LEU LYS THR PRO GLY THR TRP ILE HIS SEQRES 28 A 411 ILE THR ASP GLN ILE GLY MET PHE SER PHE THR GLY LEU SEQRES 29 A 411 ASN PRO LYS GLN VAL GLU TYR LEU VAL ASN GLU LYS HIS SEQRES 30 A 411 ILE TYR LEU LEU PRO SER GLY ARG ILE ASN VAL SER GLY SEQRES 31 A 411 LEU THR THR LYS ASN LEU ASP TYR VAL ALA THR SER ILE SEQRES 32 A 411 HIS GLU ALA VAL THR LYS ILE GLN HET PG4 A 501 8 HET PG4 A 502 7 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET PO4 A 506 5 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PG4 2(C8 H18 O5) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 PO4 O4 P 3- FORMUL 8 HOH *237(H2 O) HELIX 1 AA1 VAL A 16 ASP A 28 1 13 HELIX 2 AA2 LEU A 51 ASP A 64 1 14 HELIX 3 AA3 LEU A 77 GLY A 90 1 14 HELIX 4 AA4 SER A 93 GLU A 98 1 6 HELIX 5 AA5 GLY A 108 TYR A 124 1 17 HELIX 6 AA6 TRP A 141 GLY A 152 1 12 HELIX 7 AA7 ASP A 170 ASN A 180 1 11 HELIX 8 AA8 THR A 202 PHE A 217 1 16 HELIX 9 AA9 ASN A 233 ALA A 238 1 6 HELIX 10 AB1 ALA A 238 GLU A 247 1 10 HELIX 11 AB2 LEU A 263 GLU A 266 5 4 HELIX 12 AB3 GLU A 277 THR A 295 1 19 HELIX 13 AB4 ALA A 301 SER A 312 1 12 HELIX 14 AB5 ASN A 313 LEU A 345 1 33 HELIX 15 AB6 ILE A 352 GLN A 357 1 6 HELIX 16 AB7 ASN A 367 GLU A 377 1 11 HELIX 17 AB8 SER A 391 LEU A 393 5 3 HELIX 18 AB9 ASN A 397 ILE A 412 1 16 SHEET 1 AA1 2 VAL A 34 ASN A 35 0 SHEET 2 AA1 2 ILE A 380 TYR A 381 1 O TYR A 381 N VAL A 34 SHEET 1 AA2 7 VAL A 101 LEU A 107 0 SHEET 2 AA2 7 VAL A 268 VAL A 274 -1 O LEU A 271 N VAL A 104 SHEET 3 AA2 7 PHE A 251 ALA A 256 -1 N GLN A 255 O ASN A 270 SHEET 4 AA2 7 PHE A 219 SER A 224 1 N SER A 224 O ALA A 254 SHEET 5 AA2 7 ILE A 186 HIS A 190 1 N LEU A 189 O ASP A 223 SHEET 6 AA2 7 VAL A 134 SER A 138 1 N TYR A 135 O ILE A 186 SHEET 7 AA2 7 ILE A 156 ARG A 160 1 O ARG A 157 N VAL A 134 SHEET 1 AA3 2 TRP A 162 ASP A 163 0 SHEET 2 AA3 2 GLY A 168 LEU A 169 -1 O GLY A 168 N ASP A 163 SHEET 1 AA4 2 PHE A 361 PHE A 363 0 SHEET 2 AA4 2 ARG A 387 ASN A 389 -1 O ILE A 388 N SER A 362 CISPEP 1 SER A 138 PRO A 139 0 -10.83 CISPEP 2 ASN A 195 PRO A 196 0 19.91 SITE 1 AC1 3 LYS A 346 THR A 347 GLY A 349 SITE 1 AC2 7 CYS A 83 ARG A 86 LEU A 87 GLY A 90 SITE 2 AC2 7 ASP A 91 LEU A 311 PHE A 317 SITE 1 AC3 10 TYR A 71 GLY A 108 GLY A 109 ALA A 110 SITE 2 AC3 10 ALA A 256 SER A 258 ARG A 267 HOH A 606 SITE 3 AC3 10 HOH A 634 HOH A 796 SITE 1 AC4 9 VAL A 6 MET A 213 PHE A 217 LEU A 218 SITE 2 AC4 9 PHE A 249 GLU A 250 HOH A 601 HOH A 656 SITE 3 AC4 9 HOH A 677 SITE 1 AC5 6 ASN A 143 ALA A 146 ILE A 294 THR A 295 SITE 2 AC5 6 TRP A 296 HOH A 673 SITE 1 AC6 4 TYR A 41 THR A 43 TRP A 49 THR A 326 CRYST1 84.085 84.085 210.128 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011893 0.006866 0.000000 0.00000 SCALE2 0.000000 0.013733 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004759 0.00000