HEADER TRANSFERASE 06-JUN-18 6DND TITLE CRYSTAL STRUCTURE OF WILD-TYPE (WT) HUMAN GLUTAMATE OXALOACETATE TITLE 2 TRANSAMINASE 1 (GOT1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE, CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CASPAT,CYSTEINE AMINOTRANSFERASE,CYTOPLASMIC,CYSTEINE COMPND 5 TRANSAMINASE,CCAT,GLUTAMATE OXALOACETATE TRANSAMINASE 1,TRANSAMINASE COMPND 6 A; COMPND 7 EC: 2.6.1.1,2.6.1.3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GOT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ASPARTATE AMINOTRANSFERASE, GLUTAMATE OXALOACETATE TRANSAMINASE 1, KEYWDS 2 GOT1, PLP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.ASSAR,M.C.HOLT,A.J.STEIN,L.LAIRSON,C.A.LYSSIOTIS REVDAT 4 11-OCT-23 6DND 1 REMARK REVDAT 3 05-DEC-18 6DND 1 JRNL REVDAT 2 21-NOV-18 6DND 1 JRNL REVDAT 1 14-NOV-18 6DND 0 JRNL AUTH M.C.HOLT,Z.ASSAR,R.BEHESHTI ZAVAREH,L.LIN,J.ANGLIN, JRNL AUTH 2 O.MASHADOVA,D.HALDAR,E.MULLARKY,D.M.KREMER,L.C.CANTLEY, JRNL AUTH 3 A.C.KIMMELMAN,A.J.STEIN,L.L.LAIRSON,C.A.LYSSIOTIS JRNL TITL BIOCHEMICAL CHARACTERIZATION AND STRUCTURE-BASED MUTATIONAL JRNL TITL 2 ANALYSIS PROVIDE INSIGHT INTO THE BINDING AND MECHANISM OF JRNL TITL 3 ACTION OF NOVEL ASPARTATE AMINOTRANSFERASE INHIBITORS. JRNL REF BIOCHEMISTRY V. 57 6604 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 30365304 JRNL DOI 10.1021/ACS.BIOCHEM.8B00914 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2570 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3512 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6445 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.243 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.270 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6656 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6028 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9055 ; 1.569 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13967 ; 1.011 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 829 ; 6.080 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 310 ;36.784 ;23.935 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1042 ;15.994 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;15.382 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 982 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7487 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1426 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3292 ; 4.685 ; 5.619 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3291 ; 4.684 ; 5.619 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4117 ; 6.101 ; 8.416 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4118 ; 6.102 ; 8.417 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3364 ; 5.374 ; 6.122 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3365 ; 5.374 ; 6.122 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4935 ; 7.636 ; 8.993 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7627 ; 9.378 ;67.202 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7628 ; 9.378 ;67.207 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 410 B 3 410 26498 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6DND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234944. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3II0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH REMARK 280 4.5, 25% W/V PEG 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.51800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.93550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.43150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.93550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.51800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.43150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 412 REMARK 465 GLN A 413 REMARK 465 GLN B 413 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 16 CG1 CG2 REMARK 470 LEU A 17 CG CD1 CD2 REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 166 CE NZ REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 GLU A 277 CD OE1 OE2 REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 LYS A 290 CD CE NZ REMARK 470 GLU A 372 CG CD OE1 OE2 REMARK 470 GLN B 14 CG CD OE1 NE2 REMARK 470 PHE B 19 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 28 OH TYR B 381 1.81 REMARK 500 OD2 ASP B 30 CD2 HIS B 379 1.94 REMARK 500 CG ASP B 30 CD2 HIS B 379 1.97 REMARK 500 O ALA B 408 O LYS B 411 2.04 REMARK 500 CD ARG A 293 O HOH A 631 2.08 REMARK 500 OD2 ASP B 30 CG HIS B 379 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 196 C - N - CD ANGL. DEV. = -14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 129.53 -37.35 REMARK 500 SER A 138 -72.99 -41.48 REMARK 500 GLU A 142 -36.86 -34.60 REMARK 500 TYR A 161 -64.55 -148.69 REMARK 500 GLU A 183 151.15 -49.59 REMARK 500 ARG A 267 62.49 60.04 REMARK 500 SER A 297 -58.82 76.26 REMARK 500 SER B 138 -71.71 -47.28 REMARK 500 GLU B 142 -35.45 -37.32 REMARK 500 TYR B 161 -62.75 -146.59 REMARK 500 ALA B 193 71.35 46.28 REMARK 500 LEU B 263 32.71 -99.09 REMARK 500 SER B 297 -57.34 76.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 195 PRO A 196 31.76 REMARK 500 ASN B 195 PRO B 196 30.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 501 REMARK 610 PG4 B 501 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP B 502 DBREF 6DND A 3 413 UNP P17174 AATC_HUMAN 3 413 DBREF 6DND B 3 413 UNP P17174 AATC_HUMAN 3 413 SEQRES 1 A 411 PRO PRO SER VAL PHE ALA GLU VAL PRO GLN ALA GLN PRO SEQRES 2 A 411 VAL LEU VAL PHE LYS LEU THR ALA ASP PHE ARG GLU ASP SEQRES 3 A 411 PRO ASP PRO ARG LYS VAL ASN LEU GLY VAL GLY ALA TYR SEQRES 4 A 411 ARG THR ASP ASP CYS HIS PRO TRP VAL LEU PRO VAL VAL SEQRES 5 A 411 LYS LYS VAL GLU GLN LYS ILE ALA ASN ASP ASN SER LEU SEQRES 6 A 411 ASN HIS GLU TYR LEU PRO ILE LEU GLY LEU ALA GLU PHE SEQRES 7 A 411 ARG SER CYS ALA SER ARG LEU ALA LEU GLY ASP ASP SER SEQRES 8 A 411 PRO ALA LEU LYS GLU LYS ARG VAL GLY GLY VAL GLN SER SEQRES 9 A 411 LEU GLY GLY THR GLY ALA LEU ARG ILE GLY ALA ASP PHE SEQRES 10 A 411 LEU ALA ARG TRP TYR ASN GLY THR ASN ASN LYS ASN THR SEQRES 11 A 411 PRO VAL TYR VAL SER SER PRO THR TRP GLU ASN HIS ASN SEQRES 12 A 411 ALA VAL PHE SER ALA ALA GLY PHE LYS ASP ILE ARG SER SEQRES 13 A 411 TYR ARG TYR TRP ASP ALA GLU LYS ARG GLY LEU ASP LEU SEQRES 14 A 411 GLN GLY PHE LEU ASN ASP LEU GLU ASN ALA PRO GLU PHE SEQRES 15 A 411 SER ILE VAL VAL LEU HIS ALA CYS ALA HIS ASN PRO THR SEQRES 16 A 411 GLY ILE ASP PRO THR PRO GLU GLN TRP LYS GLN ILE ALA SEQRES 17 A 411 SER VAL MET LYS HIS ARG PHE LEU PHE PRO PHE PHE ASP SEQRES 18 A 411 SER ALA TYR GLN GLY PHE ALA SER GLY ASN LEU GLU ARG SEQRES 19 A 411 ASP ALA TRP ALA ILE ARG TYR PHE VAL SER GLU GLY PHE SEQRES 20 A 411 GLU PHE PHE CYS ALA GLN SER PHE SER LYS ASN PHE GLY SEQRES 21 A 411 LEU TYR ASN GLU ARG VAL GLY ASN LEU THR VAL VAL GLY SEQRES 22 A 411 LYS GLU PRO GLU SER ILE LEU GLN VAL LEU SER GLN MET SEQRES 23 A 411 GLU LYS ILE VAL ARG ILE THR TRP SER ASN PRO PRO ALA SEQRES 24 A 411 GLN GLY ALA ARG ILE VAL ALA SER THR LEU SER ASN PRO SEQRES 25 A 411 GLU LEU PHE GLU GLU TRP THR GLY ASN VAL LYS THR MET SEQRES 26 A 411 ALA ASP ARG ILE LEU THR MET ARG SER GLU LEU ARG ALA SEQRES 27 A 411 ARG LEU GLU ALA LEU LYS THR PRO GLY THR TRP ASN HIS SEQRES 28 A 411 ILE THR ASP GLN ILE GLY MET PHE SER PHE THR GLY LEU SEQRES 29 A 411 ASN PRO LYS GLN VAL GLU TYR LEU VAL ASN GLU LYS HIS SEQRES 30 A 411 ILE TYR LEU LEU PRO SER GLY ARG ILE ASN VAL SER GLY SEQRES 31 A 411 LEU THR THR LYS ASN LEU ASP TYR VAL ALA THR SER ILE SEQRES 32 A 411 HIS GLU ALA VAL THR LYS ILE GLN SEQRES 1 B 411 PRO PRO SER VAL PHE ALA GLU VAL PRO GLN ALA GLN PRO SEQRES 2 B 411 VAL LEU VAL PHE LYS LEU THR ALA ASP PHE ARG GLU ASP SEQRES 3 B 411 PRO ASP PRO ARG LYS VAL ASN LEU GLY VAL GLY ALA TYR SEQRES 4 B 411 ARG THR ASP ASP CYS HIS PRO TRP VAL LEU PRO VAL VAL SEQRES 5 B 411 LYS LYS VAL GLU GLN LYS ILE ALA ASN ASP ASN SER LEU SEQRES 6 B 411 ASN HIS GLU TYR LEU PRO ILE LEU GLY LEU ALA GLU PHE SEQRES 7 B 411 ARG SER CYS ALA SER ARG LEU ALA LEU GLY ASP ASP SER SEQRES 8 B 411 PRO ALA LEU LYS GLU LYS ARG VAL GLY GLY VAL GLN SER SEQRES 9 B 411 LEU GLY GLY THR GLY ALA LEU ARG ILE GLY ALA ASP PHE SEQRES 10 B 411 LEU ALA ARG TRP TYR ASN GLY THR ASN ASN LYS ASN THR SEQRES 11 B 411 PRO VAL TYR VAL SER SER PRO THR TRP GLU ASN HIS ASN SEQRES 12 B 411 ALA VAL PHE SER ALA ALA GLY PHE LYS ASP ILE ARG SER SEQRES 13 B 411 TYR ARG TYR TRP ASP ALA GLU LYS ARG GLY LEU ASP LEU SEQRES 14 B 411 GLN GLY PHE LEU ASN ASP LEU GLU ASN ALA PRO GLU PHE SEQRES 15 B 411 SER ILE VAL VAL LEU HIS ALA CYS ALA HIS ASN PRO THR SEQRES 16 B 411 GLY ILE ASP PRO THR PRO GLU GLN TRP LYS GLN ILE ALA SEQRES 17 B 411 SER VAL MET LYS HIS ARG PHE LEU PHE PRO PHE PHE ASP SEQRES 18 B 411 SER ALA TYR GLN GLY PHE ALA SER GLY ASN LEU GLU ARG SEQRES 19 B 411 ASP ALA TRP ALA ILE ARG TYR PHE VAL SER GLU GLY PHE SEQRES 20 B 411 GLU PHE PHE CYS ALA GLN SER PHE SER LYS ASN PHE GLY SEQRES 21 B 411 LEU TYR ASN GLU ARG VAL GLY ASN LEU THR VAL VAL GLY SEQRES 22 B 411 LYS GLU PRO GLU SER ILE LEU GLN VAL LEU SER GLN MET SEQRES 23 B 411 GLU LYS ILE VAL ARG ILE THR TRP SER ASN PRO PRO ALA SEQRES 24 B 411 GLN GLY ALA ARG ILE VAL ALA SER THR LEU SER ASN PRO SEQRES 25 B 411 GLU LEU PHE GLU GLU TRP THR GLY ASN VAL LYS THR MET SEQRES 26 B 411 ALA ASP ARG ILE LEU THR MET ARG SER GLU LEU ARG ALA SEQRES 27 B 411 ARG LEU GLU ALA LEU LYS THR PRO GLY THR TRP ASN HIS SEQRES 28 B 411 ILE THR ASP GLN ILE GLY MET PHE SER PHE THR GLY LEU SEQRES 29 B 411 ASN PRO LYS GLN VAL GLU TYR LEU VAL ASN GLU LYS HIS SEQRES 30 B 411 ILE TYR LEU LEU PRO SER GLY ARG ILE ASN VAL SER GLY SEQRES 31 B 411 LEU THR THR LYS ASN LEU ASP TYR VAL ALA THR SER ILE SEQRES 32 B 411 HIS GLU ALA VAL THR LYS ILE GLN HET PG4 A 501 7 HET PLP A 502 16 HET PG4 B 501 7 HET PLP B 502 16 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PG4 2(C8 H18 O5) FORMUL 4 PLP 2(C8 H10 N O6 P) FORMUL 7 HOH *101(H2 O) HELIX 1 AA1 VAL A 16 ASP A 28 1 13 HELIX 2 AA2 LEU A 51 ASP A 64 1 14 HELIX 3 AA3 LEU A 77 GLY A 90 1 14 HELIX 4 AA4 SER A 93 GLU A 98 1 6 HELIX 5 AA5 GLY A 108 TYR A 124 1 17 HELIX 6 AA6 GLU A 142 ALA A 151 1 10 HELIX 7 AA7 ASP A 170 ASN A 180 1 11 HELIX 8 AA8 THR A 202 ARG A 216 1 15 HELIX 9 AA9 ASN A 233 ALA A 238 1 6 HELIX 10 AB1 ALA A 238 GLU A 247 1 10 HELIX 11 AB2 LEU A 263 GLU A 266 5 4 HELIX 12 AB3 GLU A 277 ILE A 294 1 18 HELIX 13 AB4 ALA A 301 ASN A 313 1 13 HELIX 14 AB5 ASN A 313 LEU A 345 1 33 HELIX 15 AB6 ASN A 352 GLN A 357 1 6 HELIX 16 AB7 ASN A 367 HIS A 379 1 13 HELIX 17 AB8 SER A 391 LEU A 393 5 3 HELIX 18 AB9 ASN A 397 LYS A 411 1 15 HELIX 19 AC1 VAL B 16 ASP B 28 1 13 HELIX 20 AC2 LEU B 51 ASP B 64 1 14 HELIX 21 AC3 LEU B 77 GLY B 90 1 14 HELIX 22 AC4 SER B 93 GLU B 98 1 6 HELIX 23 AC5 GLY B 108 TYR B 124 1 17 HELIX 24 AC6 GLU B 142 ALA B 151 1 10 HELIX 25 AC7 ASP B 170 ASN B 180 1 11 HELIX 26 AC8 THR B 202 ARG B 216 1 15 HELIX 27 AC9 ASN B 233 ALA B 238 1 6 HELIX 28 AD1 ALA B 238 GLU B 247 1 10 HELIX 29 AD2 LEU B 263 GLU B 266 5 4 HELIX 30 AD3 GLU B 277 ILE B 294 1 18 HELIX 31 AD4 ALA B 301 ASN B 313 1 13 HELIX 32 AD5 ASN B 313 LEU B 345 1 33 HELIX 33 AD6 ASN B 352 GLN B 357 1 6 HELIX 34 AD7 ASN B 367 GLU B 377 1 11 HELIX 35 AD8 SER B 391 LEU B 393 5 3 HELIX 36 AD9 ASN B 397 LYS B 411 1 15 SHEET 1 AA1 2 VAL A 34 ASN A 35 0 SHEET 2 AA1 2 ILE A 380 TYR A 381 1 O TYR A 381 N VAL A 34 SHEET 1 AA2 7 VAL A 101 LEU A 107 0 SHEET 2 AA2 7 VAL A 268 VAL A 274 -1 O VAL A 273 N GLY A 102 SHEET 3 AA2 7 PHE A 251 SER A 256 -1 N GLN A 255 O ASN A 270 SHEET 4 AA2 7 PHE A 219 SER A 224 1 N SER A 224 O ALA A 254 SHEET 5 AA2 7 ILE A 186 HIS A 190 1 N VAL A 187 O PHE A 219 SHEET 6 AA2 7 VAL A 134 SER A 137 1 N TYR A 135 O VAL A 188 SHEET 7 AA2 7 ILE A 156 TYR A 159 1 O ARG A 157 N VAL A 134 SHEET 1 AA3 2 TRP A 162 ASP A 163 0 SHEET 2 AA3 2 GLY A 168 LEU A 169 -1 O GLY A 168 N ASP A 163 SHEET 1 AA4 2 PHE A 361 PHE A 363 0 SHEET 2 AA4 2 ARG A 387 ASN A 389 -1 O ILE A 388 N SER A 362 SHEET 1 AA5 2 VAL B 34 ASN B 35 0 SHEET 2 AA5 2 ILE B 380 TYR B 381 1 O TYR B 381 N VAL B 34 SHEET 1 AA6 7 VAL B 101 LEU B 107 0 SHEET 2 AA6 7 VAL B 268 VAL B 274 -1 O VAL B 273 N GLY B 102 SHEET 3 AA6 7 PHE B 251 SER B 256 -1 N GLN B 255 O ASN B 270 SHEET 4 AA6 7 PHE B 219 SER B 224 1 N SER B 224 O ALA B 254 SHEET 5 AA6 7 ILE B 186 HIS B 190 1 N VAL B 187 O PHE B 219 SHEET 6 AA6 7 VAL B 134 SER B 137 1 N TYR B 135 O ILE B 186 SHEET 7 AA6 7 ILE B 156 TYR B 159 1 O ARG B 157 N VAL B 134 SHEET 1 AA7 2 TRP B 162 ASP B 163 0 SHEET 2 AA7 2 GLY B 168 LEU B 169 -1 O GLY B 168 N ASP B 163 SHEET 1 AA8 2 PHE B 361 PHE B 363 0 SHEET 2 AA8 2 ARG B 387 ASN B 389 -1 O ILE B 388 N SER B 362 SITE 1 AC1 4 ASN A 367 GLN A 370 ALA A 408 LYS A 411 SITE 1 AC2 14 GLY A 108 GLY A 109 THR A 110 TRP A 141 SITE 2 AC2 14 ASN A 195 ASP A 223 ALA A 225 TYR A 226 SITE 3 AC2 14 SER A 256 SER A 258 LYS A 259 ARG A 267 SITE 4 AC2 14 HOH A 618 TYR B 71 SITE 1 AC3 6 ALA B 78 ARG B 81 SER B 82 LEU B 96 SITE 2 AC3 6 VAL B 101 GLY B 103 SITE 1 AC4 13 TYR A 71 GLY B 108 GLY B 109 THR B 110 SITE 2 AC4 13 TRP B 141 ASN B 195 ASP B 223 ALA B 225 SITE 3 AC4 13 TYR B 226 SER B 256 SER B 258 LYS B 259 SITE 4 AC4 13 ARG B 267 CRYST1 91.036 96.863 97.871 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010985 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010218 0.00000