data_6DNK # _entry.id 6DNK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6DNK WWPDB D_1000234993 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DNK _pdbx_database_status.recvd_initial_deposition_date 2018-06-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fernandez, D.' 1 ? 'Li, L.' 2 ? 'Ergun, S.L.' 3 ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? ? ? ? primary Cell ? ? 1097-4172 ? ? 178 ? 290 301.e10 'STING Polymer Structure Reveals Mechanisms for Activation, Hyperactivation, and Inhibition.' 2019 ? 10.1016/j.cell.2019.05.036 31230712 ? ? ? ? ? ? ? ? US ? ? 1 Biorxiv ? ? ? ? ? ? ? ? ? 'STING polymer structure reveals mechanisms for activation, hyperactivation, and inhibition' 2019 ? 10.1101/552166 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ergun, S.L.' 1 ? primary 'Fernandez, D.' 2 ? primary 'Weiss, T.M.' 3 ? primary 'Li, L.' 4 ? 1 'Ergun, S.L.' 5 ? 1 'Fernandez, D.' 6 ? 1 'Weiss, T.M.' 7 ? 1 'Li, L.' 8 ? # _cell.entry_id 6DNK _cell.length_a 110.414 _cell.length_b 110.414 _cell.length_c 35.863 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DNK _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Stimulator of interferon genes protein' 21097.717 1 ? ? ? ? 2 non-polymer syn cGAMP 674.411 1 ? ? ? ? 3 water nat water 18.015 67 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hSTING,Endoplasmic reticulum interferon stimulator,ERIS,Mediator of IRF3 activation,hMITA,Transmembrane protein 173' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;NVAHGLAWSYYIGYLRLILPELQARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTADRA GIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLIA YQEPADDSSFSLSQEVLRHLRQEE ; _entity_poly.pdbx_seq_one_letter_code_can ;NVAHGLAWSYYIGYLRLILPELQARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTADRA GIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLIA YQEPADDSSFSLSQEVLRHLRQEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 VAL n 1 3 ALA n 1 4 HIS n 1 5 GLY n 1 6 LEU n 1 7 ALA n 1 8 TRP n 1 9 SER n 1 10 TYR n 1 11 TYR n 1 12 ILE n 1 13 GLY n 1 14 TYR n 1 15 LEU n 1 16 ARG n 1 17 LEU n 1 18 ILE n 1 19 LEU n 1 20 PRO n 1 21 GLU n 1 22 LEU n 1 23 GLN n 1 24 ALA n 1 25 ARG n 1 26 ILE n 1 27 ARG n 1 28 THR n 1 29 TYR n 1 30 ASN n 1 31 GLN n 1 32 HIS n 1 33 TYR n 1 34 ASN n 1 35 ASN n 1 36 LEU n 1 37 LEU n 1 38 ARG n 1 39 GLY n 1 40 ALA n 1 41 VAL n 1 42 SER n 1 43 GLN n 1 44 ARG n 1 45 LEU n 1 46 TYR n 1 47 ILE n 1 48 LEU n 1 49 LEU n 1 50 PRO n 1 51 LEU n 1 52 ASP n 1 53 CYS n 1 54 GLY n 1 55 VAL n 1 56 PRO n 1 57 ASP n 1 58 ASN n 1 59 LEU n 1 60 SER n 1 61 MET n 1 62 ALA n 1 63 ASP n 1 64 PRO n 1 65 ASN n 1 66 ILE n 1 67 ARG n 1 68 PHE n 1 69 LEU n 1 70 ASP n 1 71 LYS n 1 72 LEU n 1 73 PRO n 1 74 GLN n 1 75 GLN n 1 76 THR n 1 77 ALA n 1 78 ASP n 1 79 ARG n 1 80 ALA n 1 81 GLY n 1 82 ILE n 1 83 LYS n 1 84 ASP n 1 85 ARG n 1 86 VAL n 1 87 TYR n 1 88 SER n 1 89 ASN n 1 90 SER n 1 91 ILE n 1 92 TYR n 1 93 GLU n 1 94 LEU n 1 95 LEU n 1 96 GLU n 1 97 ASN n 1 98 GLY n 1 99 GLN n 1 100 ARG n 1 101 ALA n 1 102 GLY n 1 103 THR n 1 104 CYS n 1 105 VAL n 1 106 LEU n 1 107 GLU n 1 108 TYR n 1 109 ALA n 1 110 THR n 1 111 PRO n 1 112 LEU n 1 113 GLN n 1 114 THR n 1 115 LEU n 1 116 PHE n 1 117 ALA n 1 118 MET n 1 119 SER n 1 120 GLN n 1 121 TYR n 1 122 SER n 1 123 GLN n 1 124 ALA n 1 125 GLY n 1 126 PHE n 1 127 SER n 1 128 ARG n 1 129 GLU n 1 130 ASP n 1 131 ARG n 1 132 LEU n 1 133 GLU n 1 134 GLN n 1 135 ALA n 1 136 LYS n 1 137 LEU n 1 138 PHE n 1 139 CYS n 1 140 ARG n 1 141 THR n 1 142 LEU n 1 143 GLU n 1 144 ASP n 1 145 ILE n 1 146 LEU n 1 147 ALA n 1 148 ASP n 1 149 ALA n 1 150 PRO n 1 151 GLU n 1 152 SER n 1 153 GLN n 1 154 ASN n 1 155 ASN n 1 156 CYS n 1 157 ARG n 1 158 LEU n 1 159 ILE n 1 160 ALA n 1 161 TYR n 1 162 GLN n 1 163 GLU n 1 164 PRO n 1 165 ALA n 1 166 ASP n 1 167 ASP n 1 168 SER n 1 169 SER n 1 170 PHE n 1 171 SER n 1 172 LEU n 1 173 SER n 1 174 GLN n 1 175 GLU n 1 176 VAL n 1 177 LEU n 1 178 ARG n 1 179 HIS n 1 180 LEU n 1 181 ARG n 1 182 GLN n 1 183 GLU n 1 184 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 184 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TMEM173, ERIS, MITA, STING' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code STING_HUMAN _struct_ref.pdbx_db_accession Q86WV6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NVAHGLAWSYYIGYLRLILPELQARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHA GIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLIA YQEPADDSSFSLSQEVLRHLRQEE ; _struct_ref.pdbx_align_begin 154 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6DNK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 184 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q86WV6 _struct_ref_seq.db_align_beg 154 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 337 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 154 _struct_ref_seq.pdbx_auth_seq_align_end 337 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6DNK ALA A 77 ? UNP Q86WV6 GLY 230 conflict 230 1 1 6DNK ARG A 79 ? UNP Q86WV6 HIS 232 conflict 232 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1SY non-polymer . cGAMP ;2',3' cGAMP, c-GMP-AMP, c[G(2',5')pA(3',5')p] ; 'C20 H24 N10 O13 P2' 674.411 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DNK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.70 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.45 _exptl_crystal.description Needle _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 285 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Sodium sulfate, PEG 3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details 'Rh coated collimating mirrors, K-B focusing mirrors' _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-05-09 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Liquid nitrogen-cooled double crystal, non fixed exit slit' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97946 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 6DNK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.040 _reflns.d_resolution_high 1.950 _reflns.number_obs 16624 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.07300 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.1000 _reflns.B_iso_Wilson_estimate 33.96 _reflns.pdbx_redundancy 5.400 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.06 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs 0.71800 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.100 _reflns_shell.pdbx_redundancy 5.30 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 6DNK _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15683 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.07 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 98.8 _refine.ls_R_factor_obs 0.195 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.193 _refine.ls_R_factor_R_free 0.241 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.300 _refine.ls_number_reflns_R_free 876 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 40.83 _refine.aniso_B[1][1] 0.08000 _refine.aniso_B[2][2] 0.08000 _refine.aniso_B[3][3] -0.16000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS ; _refine.pdbx_starting_model 6CY7 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.153 _refine.pdbx_overall_ESU_R_Free 0.149 _refine.overall_SU_ML 0.114 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.065 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1396 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 1507 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 20.07 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.019 ? 1480 'X-RAY DIFFRACTION' ? r_bond_other_d 0.007 0.020 ? 1375 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.771 2.007 ? 2014 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.050 3.000 ? 3126 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.604 5.000 ? 174 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.252 23.600 ? 75 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.662 15.000 ? 243 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.211 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.115 0.200 ? 225 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 1675 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 357 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.780 3.814 ? 693 'X-RAY DIFFRACTION' ? r_mcbond_other 2.781 3.809 ? 692 'X-RAY DIFFRACTION' ? r_mcangle_it 4.270 5.671 ? 862 'X-RAY DIFFRACTION' ? r_mcangle_other 4.268 5.678 ? 863 'X-RAY DIFFRACTION' ? r_scbond_it 3.571 4.259 ? 787 'X-RAY DIFFRACTION' ? r_scbond_other 3.569 4.258 ? 788 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 5.747 6.221 ? 1151 'X-RAY DIFFRACTION' ? r_long_range_B_refined 8.466 30.601 ? 1629 'X-RAY DIFFRACTION' ? r_long_range_B_other 8.404 30.521 ? 1595 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.95 _refine_ls_shell.d_res_low 2.00 _refine_ls_shell.number_reflns_R_work 1140 _refine_ls_shell.R_factor_R_work 0.2710 _refine_ls_shell.percent_reflns_obs 98.52 _refine_ls_shell.R_factor_R_free 0.3370 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 6DNK _struct.title 'Human Stimulator of Interferon Genes' _struct.pdbx_descriptor 'Stimulator of interferon genes protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DNK _struct_keywords.text ;human STING, complex, 2', 3'-cGAMP, TMEM173, Ala230 allelle, 230A/232R, IMMUNE SYSTEM ; _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 1 ? GLY A 13 ? ASN A 154 GLY A 166 1 ? 13 HELX_P HELX_P2 AA2 TYR A 14 ? GLN A 31 ? TYR A 167 GLN A 184 1 ? 18 HELX_P HELX_P3 AA3 ASN A 58 ? ALA A 62 ? ASN A 211 ALA A 215 5 ? 5 HELX_P HELX_P4 AA4 THR A 110 ? TYR A 121 ? THR A 263 TYR A 274 1 ? 12 HELX_P HELX_P5 AA5 SER A 122 ? GLY A 125 ? SER A 275 GLY A 278 5 ? 4 HELX_P HELX_P6 AA6 SER A 127 ? GLU A 129 ? SER A 280 GLU A 282 5 ? 3 HELX_P HELX_P7 AA7 ASP A 130 ? ASP A 148 ? ASP A 283 ASP A 301 1 ? 19 HELX_P HELX_P8 AA8 SER A 171 ? ARG A 181 ? SER A 324 ARG A 334 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 66 ? LYS A 71 ? ILE A 219 LYS A 224 AA1 2 SER A 90 ? GLU A 96 ? SER A 243 GLU A 249 AA1 3 GLN A 99 ? TYR A 108 ? GLN A 252 TYR A 261 AA1 4 LEU A 45 ? PRO A 50 ? LEU A 198 PRO A 203 AA1 5 CYS A 156 ? TYR A 161 ? CYS A 309 TYR A 314 AA2 1 GLN A 75 ? ARG A 79 ? GLN A 228 ARG A 232 AA2 2 ILE A 82 ? TYR A 87 ? ILE A 235 TYR A 240 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASP A 70 ? N ASP A 223 O ILE A 91 ? O ILE A 244 AA1 2 3 N LEU A 94 ? N LEU A 247 O ALA A 101 ? O ALA A 254 AA1 3 4 O GLU A 107 ? O GLU A 260 N LEU A 48 ? N LEU A 201 AA1 4 5 N LEU A 49 ? N LEU A 202 O ILE A 159 ? O ILE A 312 AA2 1 2 N GLN A 75 ? N GLN A 228 O TYR A 87 ? O TYR A 240 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 1SY _struct_site.pdbx_auth_seq_id 401 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 23 _struct_site.details 'binding site for residue 1SY A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 SER A 9 ? SER A 162 . ? 1_555 ? 2 AC1 23 TYR A 10 ? TYR A 163 . ? 1_555 ? 3 AC1 23 GLY A 13 ? GLY A 166 . ? 1_555 ? 4 AC1 23 TYR A 14 ? TYR A 167 . ? 1_555 ? 5 AC1 23 ARG A 79 ? ARG A 232 . ? 1_555 ? 6 AC1 23 ILE A 82 ? ILE A 235 . ? 7_643 ? 7 AC1 23 ARG A 85 ? ARG A 238 . ? 1_555 ? 8 AC1 23 ARG A 85 ? ARG A 238 . ? 7_643 ? 9 AC1 23 VAL A 86 ? VAL A 239 . ? 1_555 ? 10 AC1 23 TYR A 87 ? TYR A 240 . ? 1_555 ? 11 AC1 23 THR A 110 ? THR A 263 . ? 1_555 ? 12 AC1 23 THR A 110 ? THR A 263 . ? 7_643 ? 13 AC1 23 PRO A 111 ? PRO A 264 . ? 1_555 ? 14 AC1 23 HOH C . ? HOH A 501 . ? 1_555 ? 15 AC1 23 HOH C . ? HOH A 502 . ? 1_555 ? 16 AC1 23 HOH C . ? HOH A 506 . ? 1_555 ? 17 AC1 23 HOH C . ? HOH A 508 . ? 1_555 ? 18 AC1 23 HOH C . ? HOH A 511 . ? 1_555 ? 19 AC1 23 HOH C . ? HOH A 513 . ? 1_555 ? 20 AC1 23 HOH C . ? HOH A 520 . ? 7_643 ? 21 AC1 23 HOH C . ? HOH A 520 . ? 1_555 ? 22 AC1 23 HOH C . ? HOH A 538 . ? 1_555 ? 23 AC1 23 HOH C . ? HOH A 545 . ? 7_643 ? # _atom_sites.entry_id 6DNK _atom_sites.fract_transf_matrix[1][1] 0.009057 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009057 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027884 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 154 154 ASN ASN A . n A 1 2 VAL 2 155 155 VAL VAL A . n A 1 3 ALA 3 156 156 ALA ALA A . n A 1 4 HIS 4 157 157 HIS HIS A . n A 1 5 GLY 5 158 158 GLY GLY A . n A 1 6 LEU 6 159 159 LEU LEU A . n A 1 7 ALA 7 160 160 ALA ALA A . n A 1 8 TRP 8 161 161 TRP TRP A . n A 1 9 SER 9 162 162 SER SER A . n A 1 10 TYR 10 163 163 TYR TYR A . n A 1 11 TYR 11 164 164 TYR TYR A . n A 1 12 ILE 12 165 165 ILE ILE A . n A 1 13 GLY 13 166 166 GLY GLY A . n A 1 14 TYR 14 167 167 TYR TYR A . n A 1 15 LEU 15 168 168 LEU LEU A . n A 1 16 ARG 16 169 169 ARG ARG A . n A 1 17 LEU 17 170 170 LEU LEU A . n A 1 18 ILE 18 171 171 ILE ILE A . n A 1 19 LEU 19 172 172 LEU LEU A . n A 1 20 PRO 20 173 173 PRO PRO A . n A 1 21 GLU 21 174 174 GLU GLU A . n A 1 22 LEU 22 175 175 LEU LEU A . n A 1 23 GLN 23 176 176 GLN GLN A . n A 1 24 ALA 24 177 177 ALA ALA A . n A 1 25 ARG 25 178 178 ARG ARG A . n A 1 26 ILE 26 179 179 ILE ILE A . n A 1 27 ARG 27 180 180 ARG ARG A . n A 1 28 THR 28 181 181 THR THR A . n A 1 29 TYR 29 182 182 TYR TYR A . n A 1 30 ASN 30 183 183 ASN ASN A . n A 1 31 GLN 31 184 184 GLN GLN A . n A 1 32 HIS 32 185 185 HIS HIS A . n A 1 33 TYR 33 186 186 TYR TYR A . n A 1 34 ASN 34 187 ? ? ? A . n A 1 35 ASN 35 188 ? ? ? A . n A 1 36 LEU 36 189 ? ? ? A . n A 1 37 LEU 37 190 ? ? ? A . n A 1 38 ARG 38 191 ? ? ? A . n A 1 39 GLY 39 192 ? ? ? A . n A 1 40 ALA 40 193 193 ALA ALA A . n A 1 41 VAL 41 194 194 VAL VAL A . n A 1 42 SER 42 195 195 SER SER A . n A 1 43 GLN 43 196 196 GLN GLN A . n A 1 44 ARG 44 197 197 ARG ARG A . n A 1 45 LEU 45 198 198 LEU LEU A . n A 1 46 TYR 46 199 199 TYR TYR A . n A 1 47 ILE 47 200 200 ILE ILE A . n A 1 48 LEU 48 201 201 LEU LEU A . n A 1 49 LEU 49 202 202 LEU LEU A . n A 1 50 PRO 50 203 203 PRO PRO A . n A 1 51 LEU 51 204 204 LEU LEU A . n A 1 52 ASP 52 205 205 ASP ASP A . n A 1 53 CYS 53 206 206 CYS CYS A . n A 1 54 GLY 54 207 207 GLY GLY A . n A 1 55 VAL 55 208 208 VAL VAL A . n A 1 56 PRO 56 209 209 PRO PRO A . n A 1 57 ASP 57 210 210 ASP ASP A . n A 1 58 ASN 58 211 211 ASN ASN A . n A 1 59 LEU 59 212 212 LEU LEU A . n A 1 60 SER 60 213 213 SER SER A . n A 1 61 MET 61 214 214 MET MET A . n A 1 62 ALA 62 215 215 ALA ALA A . n A 1 63 ASP 63 216 216 ASP ASP A . n A 1 64 PRO 64 217 217 PRO PRO A . n A 1 65 ASN 65 218 218 ASN ASN A . n A 1 66 ILE 66 219 219 ILE ILE A . n A 1 67 ARG 67 220 220 ARG ARG A . n A 1 68 PHE 68 221 221 PHE PHE A . n A 1 69 LEU 69 222 222 LEU LEU A . n A 1 70 ASP 70 223 223 ASP ASP A . n A 1 71 LYS 71 224 224 LYS LYS A . n A 1 72 LEU 72 225 225 LEU LEU A . n A 1 73 PRO 73 226 226 PRO PRO A . n A 1 74 GLN 74 227 227 GLN GLN A . n A 1 75 GLN 75 228 228 GLN GLN A . n A 1 76 THR 76 229 229 THR THR A . n A 1 77 ALA 77 230 230 ALA ALA A . n A 1 78 ASP 78 231 231 ASP ASP A . n A 1 79 ARG 79 232 232 ARG ARG A . n A 1 80 ALA 80 233 233 ALA ALA A . n A 1 81 GLY 81 234 234 GLY GLY A . n A 1 82 ILE 82 235 235 ILE ILE A . n A 1 83 LYS 83 236 236 LYS LYS A . n A 1 84 ASP 84 237 237 ASP ASP A . n A 1 85 ARG 85 238 238 ARG ARG A . n A 1 86 VAL 86 239 239 VAL VAL A . n A 1 87 TYR 87 240 240 TYR TYR A . n A 1 88 SER 88 241 241 SER SER A . n A 1 89 ASN 89 242 242 ASN ASN A . n A 1 90 SER 90 243 243 SER SER A . n A 1 91 ILE 91 244 244 ILE ILE A . n A 1 92 TYR 92 245 245 TYR TYR A . n A 1 93 GLU 93 246 246 GLU GLU A . n A 1 94 LEU 94 247 247 LEU LEU A . n A 1 95 LEU 95 248 248 LEU LEU A . n A 1 96 GLU 96 249 249 GLU GLU A . n A 1 97 ASN 97 250 250 ASN ASN A . n A 1 98 GLY 98 251 251 GLY GLY A . n A 1 99 GLN 99 252 252 GLN GLN A . n A 1 100 ARG 100 253 253 ARG ARG A . n A 1 101 ALA 101 254 254 ALA ALA A . n A 1 102 GLY 102 255 255 GLY GLY A . n A 1 103 THR 103 256 256 THR THR A . n A 1 104 CYS 104 257 257 CYS CYS A . n A 1 105 VAL 105 258 258 VAL VAL A . n A 1 106 LEU 106 259 259 LEU LEU A . n A 1 107 GLU 107 260 260 GLU GLU A . n A 1 108 TYR 108 261 261 TYR TYR A . n A 1 109 ALA 109 262 262 ALA ALA A . n A 1 110 THR 110 263 263 THR THR A . n A 1 111 PRO 111 264 264 PRO PRO A . n A 1 112 LEU 112 265 265 LEU LEU A . n A 1 113 GLN 113 266 266 GLN GLN A . n A 1 114 THR 114 267 267 THR THR A . n A 1 115 LEU 115 268 268 LEU LEU A . n A 1 116 PHE 116 269 269 PHE PHE A . n A 1 117 ALA 117 270 270 ALA ALA A . n A 1 118 MET 118 271 271 MET MET A . n A 1 119 SER 119 272 272 SER SER A . n A 1 120 GLN 120 273 273 GLN GLN A . n A 1 121 TYR 121 274 274 TYR TYR A . n A 1 122 SER 122 275 275 SER SER A . n A 1 123 GLN 123 276 276 GLN GLN A . n A 1 124 ALA 124 277 277 ALA ALA A . n A 1 125 GLY 125 278 278 GLY GLY A . n A 1 126 PHE 126 279 279 PHE PHE A . n A 1 127 SER 127 280 280 SER SER A . n A 1 128 ARG 128 281 281 ARG ARG A . n A 1 129 GLU 129 282 282 GLU GLU A . n A 1 130 ASP 130 283 283 ASP ASP A . n A 1 131 ARG 131 284 284 ARG ARG A . n A 1 132 LEU 132 285 285 LEU LEU A . n A 1 133 GLU 133 286 286 GLU GLU A . n A 1 134 GLN 134 287 287 GLN GLN A . n A 1 135 ALA 135 288 288 ALA ALA A . n A 1 136 LYS 136 289 289 LYS LYS A . n A 1 137 LEU 137 290 290 LEU LEU A . n A 1 138 PHE 138 291 291 PHE PHE A . n A 1 139 CYS 139 292 292 CYS CYS A . n A 1 140 ARG 140 293 293 ARG ARG A . n A 1 141 THR 141 294 294 THR THR A . n A 1 142 LEU 142 295 295 LEU LEU A . n A 1 143 GLU 143 296 296 GLU GLU A . n A 1 144 ASP 144 297 297 ASP ASP A . n A 1 145 ILE 145 298 298 ILE ILE A . n A 1 146 LEU 146 299 299 LEU LEU A . n A 1 147 ALA 147 300 300 ALA ALA A . n A 1 148 ASP 148 301 301 ASP ASP A . n A 1 149 ALA 149 302 302 ALA ALA A . n A 1 150 PRO 150 303 303 PRO PRO A . n A 1 151 GLU 151 304 304 GLU GLU A . n A 1 152 SER 152 305 305 SER SER A . n A 1 153 GLN 153 306 306 GLN GLN A . n A 1 154 ASN 154 307 307 ASN ASN A . n A 1 155 ASN 155 308 308 ASN ASN A . n A 1 156 CYS 156 309 309 CYS CYS A . n A 1 157 ARG 157 310 310 ARG ARG A . n A 1 158 LEU 158 311 311 LEU LEU A . n A 1 159 ILE 159 312 312 ILE ILE A . n A 1 160 ALA 160 313 313 ALA ALA A . n A 1 161 TYR 161 314 314 TYR TYR A . n A 1 162 GLN 162 315 315 GLN GLN A . n A 1 163 GLU 163 316 316 GLU GLU A . n A 1 164 PRO 164 317 317 PRO PRO A . n A 1 165 ALA 165 318 318 ALA ALA A . n A 1 166 ASP 166 319 ? ? ? A . n A 1 167 ASP 167 320 ? ? ? A . n A 1 168 SER 168 321 ? ? ? A . n A 1 169 SER 169 322 322 SER SER A . n A 1 170 PHE 170 323 323 PHE PHE A . n A 1 171 SER 171 324 324 SER SER A . n A 1 172 LEU 172 325 325 LEU LEU A . n A 1 173 SER 173 326 326 SER SER A . n A 1 174 GLN 174 327 327 GLN GLN A . n A 1 175 GLU 175 328 328 GLU GLU A . n A 1 176 VAL 176 329 329 VAL VAL A . n A 1 177 LEU 177 330 330 LEU LEU A . n A 1 178 ARG 178 331 331 ARG ARG A . n A 1 179 HIS 179 332 332 HIS HIS A . n A 1 180 LEU 180 333 333 LEU LEU A . n A 1 181 ARG 181 334 334 ARG ARG A . n A 1 182 GLN 182 335 335 GLN GLN A . n A 1 183 GLU 183 336 ? ? ? A . n A 1 184 GLU 184 337 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1SY 1 401 401 1SY 1SY A . C 3 HOH 1 501 501 HOH HOH A . C 3 HOH 2 502 502 HOH HOH A . C 3 HOH 3 503 503 HOH HOH A . C 3 HOH 4 504 504 HOH HOH A . C 3 HOH 5 505 505 HOH HOH A . C 3 HOH 6 506 506 HOH HOH A . C 3 HOH 7 507 507 HOH HOH A . C 3 HOH 8 508 508 HOH HOH A . C 3 HOH 9 509 509 HOH HOH A . C 3 HOH 10 510 510 HOH HOH A . C 3 HOH 11 511 511 HOH HOH A . C 3 HOH 12 512 512 HOH HOH A . C 3 HOH 13 513 513 HOH HOH A . C 3 HOH 14 514 514 HOH HOH A . C 3 HOH 15 515 515 HOH HOH A . C 3 HOH 16 516 516 HOH HOH A . C 3 HOH 17 517 517 HOH HOH A . C 3 HOH 18 518 518 HOH HOH A . C 3 HOH 19 519 519 HOH HOH A . C 3 HOH 20 520 520 HOH HOH A . C 3 HOH 21 521 521 HOH HOH A . C 3 HOH 22 522 522 HOH HOH A . C 3 HOH 23 523 523 HOH HOH A . C 3 HOH 24 524 524 HOH HOH A . C 3 HOH 25 525 525 HOH HOH A . C 3 HOH 26 526 526 HOH HOH A . C 3 HOH 27 527 527 HOH HOH A . C 3 HOH 28 528 528 HOH HOH A . C 3 HOH 29 529 529 HOH HOH A . C 3 HOH 30 530 530 HOH HOH A . C 3 HOH 31 531 531 HOH HOH A . C 3 HOH 32 532 532 HOH HOH A . C 3 HOH 33 533 533 HOH HOH A . C 3 HOH 34 534 534 HOH HOH A . C 3 HOH 35 535 535 HOH HOH A . C 3 HOH 36 536 536 HOH HOH A . C 3 HOH 37 537 537 HOH HOH A . C 3 HOH 38 538 538 HOH HOH A . C 3 HOH 39 539 539 HOH HOH A . C 3 HOH 40 540 540 HOH HOH A . C 3 HOH 41 541 541 HOH HOH A . C 3 HOH 42 542 542 HOH HOH A . C 3 HOH 43 543 543 HOH HOH A . C 3 HOH 44 544 544 HOH HOH A . C 3 HOH 45 545 545 HOH HOH A . C 3 HOH 46 546 546 HOH HOH A . C 3 HOH 47 547 547 HOH HOH A . C 3 HOH 48 548 548 HOH HOH A . C 3 HOH 49 549 549 HOH HOH A . C 3 HOH 50 550 550 HOH HOH A . C 3 HOH 51 551 551 HOH HOH A . C 3 HOH 52 552 552 HOH HOH A . C 3 HOH 53 553 553 HOH HOH A . C 3 HOH 54 554 554 HOH HOH A . C 3 HOH 55 555 555 HOH HOH A . C 3 HOH 56 556 556 HOH HOH A . C 3 HOH 57 557 557 HOH HOH A . C 3 HOH 58 558 558 HOH HOH A . C 3 HOH 59 559 559 HOH HOH A . C 3 HOH 60 560 560 HOH HOH A . C 3 HOH 61 561 561 HOH HOH A . C 3 HOH 62 562 562 HOH HOH A . C 3 HOH 63 563 563 HOH HOH A . C 3 HOH 64 564 564 HOH HOH A . C 3 HOH 65 565 565 HOH HOH A . C 3 HOH 66 566 566 HOH HOH A . C 3 HOH 67 567 567 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4900 ? 1 MORE -19 ? 1 'SSA (A^2)' 15590 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_643 y+1,x-1,-z-2 0.0000000000 1.0000000000 0.0000000000 110.4140000000 1.0000000000 0.0000000000 0.0000000000 -110.4140000000 0.0000000000 0.0000000000 -1.0000000000 -71.7260000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 557 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-03-13 2 'Structure model' 1 1 2019-07-17 3 'Structure model' 1 2 2019-07-24 4 'Structure model' 1 3 2019-08-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_volume' 2 3 'Structure model' '_citation.page_first' 3 4 'Structure model' '_citation.page_last' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG1 A THR 263 ? A O A HOH 502 ? ? 2.15 2 1 O A HOH 526 ? ? O A HOH 559 ? ? 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 232 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 232 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 232 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.90 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.60 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 167 ? ? -147.23 -67.28 2 1 HIS A 185 ? ? 179.42 -42.01 3 1 ASP A 216 ? ? -166.05 119.94 4 1 SER A 305 ? ? -143.82 -105.51 5 1 GLN A 306 ? ? 17.80 -55.79 6 1 ARG A 334 ? ? -64.97 89.87 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 305 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLN _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 306 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -126.22 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id 1SY _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 401 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O29 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id 1SY _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O29 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 187 ? A ASN 34 2 1 Y 1 A ASN 188 ? A ASN 35 3 1 Y 1 A LEU 189 ? A LEU 36 4 1 Y 1 A LEU 190 ? A LEU 37 5 1 Y 1 A ARG 191 ? A ARG 38 6 1 Y 1 A GLY 192 ? A GLY 39 7 1 Y 1 A ASP 319 ? A ASP 166 8 1 Y 1 A ASP 320 ? A ASP 167 9 1 Y 1 A SER 321 ? A SER 168 10 1 Y 1 A GLU 336 ? A GLU 183 11 1 Y 1 A GLU 337 ? A GLU 184 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 cGAMP 1SY 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details ? #