data_6DNR # _entry.id 6DNR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.358 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DNR pdb_00006dnr 10.2210/pdb6dnr/pdb WWPDB D_1000234885 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DNR _pdbx_database_status.recvd_initial_deposition_date 2018-06-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Peselis, A.' 1 ? 'Serganov, A.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 887 _citation.page_last 894 _citation.title 'ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-018-0114-4 _citation.pdbx_database_id_PubMed 30120360 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Peselis, A.' 1 ? primary 'Serganov, A.' 2 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6DNR _cell.details ? _cell.formula_units_Z ? _cell.length_a 63.773 _cell.length_a_esd ? _cell.length_b 63.773 _cell.length_b_esd ? _cell.length_c 376.493 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DNR _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PRPP Riboswitch' 34902.508 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GAAAGUGUGUCUAGGGUUCCGCGUGCUUCGGCACGGACUGGUCCAAGUGACACAGACGCAUUCGUGCGUUACACC GGAGGGAUAGAAGCCCAGGCGGGUAGGUUU(CCC) ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAAAGUGUGUCUAGGGUUCCGCGUGCUUCGGCACGGACUGGUCCAAGUGACACAGACGCAUUCGUGCGUUACACCGGAG GGAUAGAAGCCCAGGCGGGUAGGUUUC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 A n 1 4 A n 1 5 A n 1 6 G n 1 7 U n 1 8 G n 1 9 U n 1 10 G n 1 11 U n 1 12 C n 1 13 U n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 U n 1 20 C n 1 21 C n 1 22 G n 1 23 C n 1 24 G n 1 25 U n 1 26 G n 1 27 C n 1 28 U n 1 29 U n 1 30 C n 1 31 G n 1 32 G n 1 33 C n 1 34 A n 1 35 C n 1 36 G n 1 37 G n 1 38 A n 1 39 C n 1 40 U n 1 41 G n 1 42 G n 1 43 U n 1 44 C n 1 45 C n 1 46 A n 1 47 A n 1 48 G n 1 49 U n 1 50 G n 1 51 A n 1 52 C n 1 53 A n 1 54 C n 1 55 A n 1 56 G n 1 57 A n 1 58 C n 1 59 G n 1 60 C n 1 61 A n 1 62 U n 1 63 U n 1 64 C n 1 65 G n 1 66 U n 1 67 G n 1 68 C n 1 69 G n 1 70 U n 1 71 U n 1 72 A n 1 73 C n 1 74 A n 1 75 C n 1 76 C n 1 77 G n 1 78 G n 1 79 A n 1 80 G n 1 81 G n 1 82 G n 1 83 A n 1 84 U n 1 85 A n 1 86 G n 1 87 A n 1 88 A n 1 89 G n 1 90 C n 1 91 C n 1 92 C n 1 93 A n 1 94 G n 1 95 G n 1 96 C n 1 97 G n 1 98 G n 1 99 G n 1 100 U n 1 101 A n 1 102 G n 1 103 G n 1 104 U n 1 105 U n 1 106 U n 1 107 CCC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 107 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Syntrophothermus lipocalidus DSM 12680' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 643648 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6DNR _struct_ref.pdbx_db_accession 6DNR _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6DNR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 107 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6DNR _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 107 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 107 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DNR _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.17 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 61.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M NH4-acetate, 0.1 M HEPES-KOH pH 7.4, and 45% 2-methyl-2,4-pentanediol (v/v)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-10-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6DNR _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.89 _reflns.d_resolution_low 20.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10251 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 93.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.5 _reflns.pdbx_Rmerge_I_obs 0.154 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 27.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.051 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.834 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 2.95 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.554 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.388 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DNR _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.896 _refine.ls_d_res_low 19.807 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10251 _refine.ls_number_reflns_R_free 1028 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.17 _refine.ls_percent_reflns_R_free 10.03 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2185 _refine.ls_R_factor_R_free 0.2734 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2121 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.96 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.48 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2310 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2313 _refine_hist.d_res_high 2.896 _refine_hist.d_res_low 19.807 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 2584 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.241 ? 4035 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 20.239 ? 1293 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.054 ? 533 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 ? 108 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.8961 3.0482 . . 145 1296 96.00 . . . 0.4245 . 0.3583 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0482 3.2384 . . 148 1331 97.00 . . . 0.3380 . 0.2868 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2384 3.4872 . . 150 1341 98.00 . . . 0.3625 . 0.2407 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4872 3.8359 . . 153 1363 98.00 . . . 0.3404 . 0.2402 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.8359 4.3857 . . 152 1359 97.00 . . . 0.3103 . 0.2246 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.3857 5.5058 . . 143 1303 89.00 . . . 0.2653 . 0.2078 . . . . . . . . . . 'X-RAY DIFFRACTION' 5.5058 19.8078 . . 137 1230 78.00 . . . 0.2169 . 0.1779 . . . . . . . . . . # _struct.entry_id 6DNR _struct.title 'PRPP Riboswitch bound to PRPP, ligand-free structure' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DNR _struct_keywords.text 'riboswitch, non-coding, RNA, yKKC' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.538 ? ? covale2 covale both ? A U 106 "O3'" ? ? ? 1_555 A CCC 107 P ? ? A U 106 A CCC 107 1_555 ? ? ? ? ? ? ? 1.601 ? ? metalc1 metalc ? ? A G 48 OP2 ? ? ? 1_555 C MG . MG ? ? A G 48 A MG 202 1_555 ? ? ? ? ? ? ? 2.506 ? ? metalc2 metalc ? ? A G 48 OP1 ? ? ? 1_555 D MG . MG ? ? A G 48 A MG 203 1_555 ? ? ? ? ? ? ? 2.155 ? ? metalc3 metalc ? ? A C 90 OP1 ? ? ? 1_555 D MG . MG ? ? A C 90 A MG 203 1_555 ? ? ? ? ? ? ? 2.119 ? ? metalc4 metalc ? ? A C 91 OP1 ? ? ? 1_555 C MG . MG ? ? A C 91 A MG 202 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc5 metalc ? ? A C 91 OP2 ? ? ? 1_555 D MG . MG ? ? A C 91 A MG 203 1_555 ? ? ? ? ? ? ? 2.002 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A CCC 107 N3 ? ? A G 2 A CCC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A CCC 107 O2 ? ? A G 2 A CCC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A CCC 107 N4 ? ? A G 2 A CCC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 106 N3 ? ? A A 3 A U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 106 O4 ? ? A A 3 A U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 105 N3 ? ? A A 4 A U 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 105 O4 ? ? A A 4 A U 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 104 N3 ? ? A A 5 A U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 104 O4 ? ? A A 5 A U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 6 N2 ? ? ? 1_555 A A 72 N1 ? ? A G 6 A A 72 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog11 hydrog ? ? A G 6 N3 ? ? ? 1_555 A A 72 N6 ? ? A G 6 A A 72 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog12 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 55 N1 ? ? A U 7 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 55 N6 ? ? A U 7 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 54 N3 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 54 O2 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 54 N4 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 53 N1 ? ? A U 9 A A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 53 N6 ? ? A U 9 A A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 52 N3 ? ? A G 10 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 52 O2 ? ? A G 10 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 52 N4 ? ? A G 10 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 51 N1 ? ? A U 11 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 51 N6 ? ? A U 11 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 50 N1 ? ? A C 12 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 12 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 50 N2 ? ? A C 12 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 47 N7 ? ? A U 13 A A 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog28 hydrog ? ? A U 13 O2 ? ? ? 1_555 A A 47 N6 ? ? A U 13 A A 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog29 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 46 N3 ? ? A A 14 A A 46 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog30 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 15 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 15 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 15 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 N2 ? ? ? 1_555 A A 88 N3 ? ? A G 15 A A 88 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog34 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 16 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 16 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 16 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 N2 ? ? ? 1_555 A U 19 O4 ? ? A G 17 A U 19 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog38 hydrog ? ? A G 17 N1 ? ? ? 1_555 A U 43 O4 ? ? A G 17 A U 43 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog39 hydrog ? ? A G 17 N2 ? ? ? 1_555 A A 85 N1 ? ? A G 17 A A 85 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog40 hydrog ? ? A U 18 O2 ? ? ? 1_555 A C 20 N4 ? ? A U 18 A C 20 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog41 hydrog ? ? A U 19 N3 ? ? ? 1_555 A U 43 O2 ? ? A U 19 A U 43 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog42 hydrog ? ? A U 19 O4 ? ? ? 1_555 A U 43 N3 ? ? A U 19 A U 43 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog43 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 21 A G 37 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog47 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 21 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 21 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 21 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 22 N2 ? ? ? 1_555 A U 40 O4 ? ? A G 22 A U 40 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog54 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 24 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 24 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 24 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 25 N3 ? ? ? 1_555 A A 34 N1 ? ? A U 25 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 25 O4 ? ? ? 1_555 A A 34 N6 ? ? A U 25 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 26 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 26 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 26 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A U 28 O2 ? ? ? 1_555 A G 31 N1 ? ? A U 28 A G 31 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog69 hydrog ? ? A G 37 N1 ? ? ? 1_555 A G 41 O6 ? ? A G 37 A G 41 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog70 hydrog ? ? A G 37 N2 ? ? ? 1_555 A G 41 N7 ? ? A G 37 A G 41 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog71 hydrog ? ? A G 48 N2 ? ? ? 1_555 A A 74 N3 ? ? A G 48 A A 74 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog72 hydrog ? ? A G 56 N1 ? ? ? 1_555 A U 71 O2 ? ? A G 56 A U 71 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog73 hydrog ? ? A G 56 O6 ? ? ? 1_555 A U 71 N3 ? ? A G 56 A U 71 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog74 hydrog ? ? A A 57 N1 ? ? ? 1_555 A U 70 N3 ? ? A A 57 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 57 N6 ? ? ? 1_555 A U 70 O4 ? ? A A 57 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 69 N1 ? ? A C 58 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 69 O6 ? ? A C 58 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 69 N2 ? ? A C 58 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 59 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 59 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 59 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 59 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 59 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 59 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 60 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 60 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 60 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 60 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 60 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 60 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A A 61 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 61 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A A 61 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 61 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A U 62 O2 ? ? ? 1_555 A G 65 N1 ? ? A U 62 A G 65 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog88 hydrog ? ? A C 73 N3 ? ? ? 1_555 A G 94 N1 ? ? A C 73 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A C 73 N4 ? ? ? 1_555 A G 94 O6 ? ? A C 73 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A C 73 O2 ? ? ? 1_555 A G 94 N2 ? ? A C 73 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A C 75 N3 ? ? ? 1_555 A G 98 N1 ? ? A C 75 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 75 N4 ? ? ? 1_555 A G 98 O6 ? ? A C 75 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A C 75 O2 ? ? ? 1_555 A G 98 N2 ? ? A C 75 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A C 76 N3 ? ? ? 1_555 A G 97 N1 ? ? A C 76 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A C 76 N4 ? ? ? 1_555 A G 97 O6 ? ? A C 76 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A C 76 O2 ? ? ? 1_555 A G 97 N2 ? ? A C 76 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A G 77 N1 ? ? ? 1_555 A C 96 N3 ? ? A G 77 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A G 77 N2 ? ? ? 1_555 A C 96 O2 ? ? A G 77 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A G 77 O6 ? ? ? 1_555 A C 96 N4 ? ? A G 77 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A G 78 O6 ? ? ? 1_555 A G 95 N2 ? ? A G 78 A G 95 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog101 hydrog ? ? A A 79 N1 ? ? ? 1_555 A A 93 N6 ? ? A A 79 A A 93 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog102 hydrog ? ? A A 79 N6 ? ? ? 1_555 A A 93 N1 ? ? A A 79 A A 93 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog103 hydrog ? ? A G 80 N1 ? ? ? 1_555 A C 92 N3 ? ? A G 80 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A G 80 N2 ? ? ? 1_555 A C 92 O2 ? ? A G 80 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A G 80 O6 ? ? ? 1_555 A C 92 N4 ? ? A G 80 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A G 81 N1 ? ? ? 1_555 A C 91 N3 ? ? A G 81 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A G 81 N2 ? ? ? 1_555 A C 91 O2 ? ? A G 81 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A G 81 O6 ? ? ? 1_555 A C 91 N4 ? ? A G 81 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A G 82 N1 ? ? ? 1_555 A C 90 N3 ? ? A G 82 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A G 82 N2 ? ? ? 1_555 A C 90 O2 ? ? A G 82 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A G 82 O6 ? ? ? 1_555 A C 90 N4 ? ? A G 82 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A U 84 N3 ? ? ? 1_555 A A 87 N7 ? ? A U 84 A A 87 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog113 hydrog ? ? A U 84 O2 ? ? ? 1_555 A A 87 N6 ? ? A U 84 A A 87 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 202 ? 2 'binding site for residue MG A 202' AC2 Software A MG 203 ? 3 'binding site for residue MG A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 G A 48 ? G A 48 . ? 1_555 ? 2 AC1 2 C A 91 ? C A 91 . ? 1_555 ? 3 AC2 3 G A 48 ? G A 48 . ? 1_555 ? 4 AC2 3 C A 90 ? C A 90 . ? 1_555 ? 5 AC2 3 C A 91 ? C A 91 . ? 1_555 ? # _atom_sites.entry_id 6DNR _atom_sites.fract_transf_matrix[1][1] 0.015681 _atom_sites.fract_transf_matrix[1][2] 0.009053 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018106 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.002656 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 U 13 13 13 U U A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 U 19 19 19 U U A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 G 26 26 26 G G A . n A 1 27 C 27 27 27 C C A . n A 1 28 U 28 28 28 U U A . n A 1 29 U 29 29 29 U U A . n A 1 30 C 30 30 30 C C A . n A 1 31 G 31 31 31 G G A . n A 1 32 G 32 32 32 G G A . n A 1 33 C 33 33 33 C C A . n A 1 34 A 34 34 34 A A A . n A 1 35 C 35 35 35 C C A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 A 38 38 38 A A A . n A 1 39 C 39 39 39 C C A . n A 1 40 U 40 40 40 U U A . n A 1 41 G 41 41 41 G G A . n A 1 42 G 42 42 42 G G A . n A 1 43 U 43 43 43 U U A . n A 1 44 C 44 44 44 C C A . n A 1 45 C 45 45 45 C C A . n A 1 46 A 46 46 46 A A A . n A 1 47 A 47 47 47 A A A . n A 1 48 G 48 48 48 G G A . n A 1 49 U 49 49 49 U U A . n A 1 50 G 50 50 50 G G A . n A 1 51 A 51 51 51 A A A . n A 1 52 C 52 52 52 C C A . n A 1 53 A 53 53 53 A A A . n A 1 54 C 54 54 54 C C A . n A 1 55 A 55 55 55 A A A . n A 1 56 G 56 56 56 G G A . n A 1 57 A 57 57 57 A A A . n A 1 58 C 58 58 58 C C A . n A 1 59 G 59 59 59 G G A . n A 1 60 C 60 60 60 C C A . n A 1 61 A 61 61 61 A A A . n A 1 62 U 62 62 62 U U A . n A 1 63 U 63 63 63 U U A . n A 1 64 C 64 64 64 C C A . n A 1 65 G 65 65 65 G G A . n A 1 66 U 66 66 66 U U A . n A 1 67 G 67 67 67 G G A . n A 1 68 C 68 68 68 C C A . n A 1 69 G 69 69 69 G G A . n A 1 70 U 70 70 70 U U A . n A 1 71 U 71 71 71 U U A . n A 1 72 A 72 72 72 A A A . n A 1 73 C 73 73 73 C C A . n A 1 74 A 74 74 74 A A A . n A 1 75 C 75 75 75 C C A . n A 1 76 C 76 76 76 C C A . n A 1 77 G 77 77 77 G G A . n A 1 78 G 78 78 78 G G A . n A 1 79 A 79 79 79 A A A . n A 1 80 G 80 80 80 G G A . n A 1 81 G 81 81 81 G G A . n A 1 82 G 82 82 82 G G A . n A 1 83 A 83 83 83 A A A . n A 1 84 U 84 84 84 U U A . n A 1 85 A 85 85 85 A A A . n A 1 86 G 86 86 86 G G A . n A 1 87 A 87 87 87 A A A . n A 1 88 A 88 88 88 A A A . n A 1 89 G 89 89 89 G G A . n A 1 90 C 90 90 90 C C A . n A 1 91 C 91 91 91 C C A . n A 1 92 C 92 92 92 C C A . n A 1 93 A 93 93 93 A A A . n A 1 94 G 94 94 94 G G A . n A 1 95 G 95 95 95 G G A . n A 1 96 C 96 96 96 C C A . n A 1 97 G 97 97 97 G G A . n A 1 98 G 98 98 98 G G A . n A 1 99 G 99 99 99 G G A . n A 1 100 U 100 100 100 U U A . n A 1 101 A 101 101 101 A A A . n A 1 102 G 102 102 102 G G A . n A 1 103 G 103 103 103 G G A . n A 1 104 U 104 104 104 U U A . n A 1 105 U 105 105 105 U U A . n A 1 106 U 106 106 106 U U A . n A 1 107 CCC 107 107 107 CCC CCC A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 1 MG MG A . C 2 MG 1 202 2 MG MG A . D 2 MG 1 203 3 MG MG A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 48 ? A G 48 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 OP1 ? A C 91 ? A C 91 ? 1_555 64.6 ? 2 OP1 ? A G 48 ? A G 48 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP1 ? A C 90 ? A C 90 ? 1_555 74.0 ? 3 OP1 ? A G 48 ? A G 48 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 91 ? A C 91 ? 1_555 81.0 ? 4 OP1 ? A C 90 ? A C 90 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 91 ? A C 91 ? 1_555 93.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-11-14 2 'Structure model' 1 1 2020-01-01 3 'Structure model' 1 2 2022-04-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Author supporting evidence' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' pdbx_database_PDB_obs_spr 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_PDB_obs_spr 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 7 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.value' 15 3 'Structure model' '_struct_conn.conn_type_id' 16 3 'Structure model' '_struct_conn.id' 17 3 'Structure model' '_struct_conn.pdbx_dist_value' 18 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -27.6560 _pdbx_refine_tls.origin_y 1.1008 _pdbx_refine_tls.origin_z -31.1645 _pdbx_refine_tls.T[1][1] 1.2944 _pdbx_refine_tls.T[2][2] 0.8735 _pdbx_refine_tls.T[3][3] 0.6058 _pdbx_refine_tls.T[1][2] 0.0256 _pdbx_refine_tls.T[1][3] -0.0021 _pdbx_refine_tls.T[2][3] -0.0605 _pdbx_refine_tls.L[1][1] 1.7159 _pdbx_refine_tls.L[2][2] 4.4018 _pdbx_refine_tls.L[3][3] 0.3931 _pdbx_refine_tls.L[1][2] 0.4227 _pdbx_refine_tls.L[1][3] 0.7156 _pdbx_refine_tls.L[2][3] 0.0417 _pdbx_refine_tls.S[1][1] 0.2346 _pdbx_refine_tls.S[1][2] 0.3327 _pdbx_refine_tls.S[1][3] 0.0204 _pdbx_refine_tls.S[2][1] -0.2800 _pdbx_refine_tls.S[2][2] -0.2261 _pdbx_refine_tls.S[2][3] -0.0079 _pdbx_refine_tls.S[3][1] 0.5100 _pdbx_refine_tls.S[3][2] -0.2031 _pdbx_refine_tls.S[3][3] 0.0114 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A G 102 ? ? P A G 103 ? ? 1.692 1.607 0.085 0.012 Y 2 1 "O3'" A G 103 ? ? P A U 104 ? ? 1.506 1.607 -0.101 0.012 Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GTP _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 G _pdbx_validate_rmsd_angle.auth_seq_id_2 2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 2 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 119.02 _pdbx_validate_rmsd_angle.angle_target_value 110.50 _pdbx_validate_rmsd_angle.angle_deviation 8.52 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GTP 1 ? N9 ? A GTP 1 N9 2 1 Y 0 A GTP 1 ? C8 ? A GTP 1 C8 3 1 Y 0 A GTP 1 ? C5 ? A GTP 1 C5 4 1 Y 0 A GTP 1 ? N1 ? A GTP 1 N1 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6DNR 'double helix' 6DNR 'a-form double helix' 6DNR 'hairpin loop' 6DNR tetraloop 6DNR 'bulge loop' 6DNR 'mismatched base pair' 6DNR 'quadruple helix' 6DNR 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A CCC 107 1_555 0.391 -0.076 0.398 4.152 4.379 -8.913 1 A_G2:CCC107_A A 2 ? A 107 ? 19 1 1 A A 3 1_555 A U 106 1_555 0.075 -0.136 0.187 7.558 -2.269 -2.004 2 A_A3:U106_A A 3 ? A 106 ? 20 1 1 A A 4 1_555 A U 105 1_555 0.030 -0.107 0.391 6.716 -7.562 -1.626 3 A_A4:U105_A A 4 ? A 105 ? 20 1 1 A A 5 1_555 A U 104 1_555 0.268 -0.105 2.131 30.430 3.672 1.312 4 A_A5:U104_A A 5 ? A 104 ? 20 1 1 A A 72 1_555 A G 6 1_555 -4.151 3.040 -0.303 21.731 3.202 57.719 5 A_A72:G6_A A 72 ? A 6 ? 10 6 1 A C 73 1_555 A G 94 1_555 0.185 -0.235 0.417 3.687 -13.035 -0.361 6 A_C73:G94_A A 73 ? A 94 ? 19 1 1 A A 74 1_555 A G 48 1_555 2.232 7.309 -0.977 29.523 10.269 151.356 7 A_A74:G48_A A 74 ? A 48 ? ? 12 1 A G 31 1_555 A U 28 1_555 -0.525 4.819 -0.433 12.179 15.759 132.266 8 A_G31:U28_A A 31 ? A 28 ? ? 2 1 A G 32 1_555 A C 27 1_555 -0.166 -0.202 -0.313 -1.914 9.665 0.099 9 A_G32:C27_A A 32 ? A 27 ? 19 1 1 A C 33 1_555 A G 26 1_555 -0.052 -0.363 -0.226 4.247 -7.639 -3.848 10 A_C33:G26_A A 33 ? A 26 ? 19 1 1 A A 34 1_555 A U 25 1_555 -0.045 -0.155 0.197 2.166 -4.231 5.503 11 A_A34:U25_A A 34 ? A 25 ? 20 1 1 A C 35 1_555 A G 24 1_555 0.160 -0.184 -0.013 5.256 -2.112 -3.917 12 A_C35:G24_A A 35 ? A 24 ? 19 1 1 A G 36 1_555 A C 23 1_555 -0.060 0.060 0.381 -0.891 -4.489 -1.159 13 A_G36:C23_A A 36 ? A 23 ? 19 1 1 A C 39 1_555 A G 22 1_555 0.145 0.099 0.378 -5.876 -1.125 5.026 14 A_C39:G22_A A 39 ? A 22 ? 19 1 1 A G 41 1_555 A C 21 1_555 -0.278 -0.070 0.090 7.856 -2.048 0.455 15 A_G41:C21_A A 41 ? A 21 ? 19 1 1 A G 42 1_555 A C 20 1_555 -0.179 -0.271 -0.232 -6.569 4.946 -2.646 16 A_G42:C20_A A 42 ? A 20 ? 19 1 1 A U 43 1_555 A G 17 1_555 -3.738 0.676 -0.398 6.358 -0.104 -43.467 17 A_U43:G17_A A 43 ? A 17 ? ? 1 1 A C 44 1_555 A G 16 1_555 0.042 0.006 -0.373 11.057 -4.416 2.921 18 A_C44:G16_A A 44 ? A 16 ? 19 1 1 A C 45 1_555 A G 15 1_555 0.066 -0.019 -0.352 4.516 2.030 2.561 19 A_C45:G15_A A 45 ? A 15 ? 19 1 1 A A 46 1_555 A A 14 1_555 6.683 -4.211 -0.023 -2.667 -7.195 -18.714 20 A_A46:A14_A A 46 ? A 14 ? ? 10 1 A A 47 1_555 A U 13 1_555 -4.329 -2.140 0.756 1.497 -8.054 -90.610 21 A_A47:U13_A A 47 ? A 13 ? 24 4 1 A G 50 1_555 A C 12 1_555 -0.172 -0.304 0.709 0.833 -1.783 0.066 22 A_G50:C12_A A 50 ? A 12 ? 19 1 1 A A 51 1_555 A U 11 1_555 -0.125 -0.072 -0.138 -0.742 -6.263 0.203 23 A_A51:U11_A A 51 ? A 11 ? 20 1 1 A C 52 1_555 A G 10 1_555 0.275 -0.064 -0.571 2.410 -5.594 2.772 24 A_C52:G10_A A 52 ? A 10 ? 19 1 1 A A 53 1_555 A U 9 1_555 0.085 -0.073 0.127 -4.646 0.729 -0.656 25 A_A53:U9_A A 53 ? A 9 ? 20 1 1 A C 54 1_555 A G 8 1_555 0.127 -0.151 0.862 -6.639 2.747 0.417 26 A_C54:G8_A A 54 ? A 8 ? 19 1 1 A A 55 1_555 A U 7 1_555 0.159 -0.064 0.266 3.433 2.069 -2.594 27 A_A55:U7_A A 55 ? A 7 ? 20 1 1 A G 56 1_555 A U 71 1_555 -2.500 -0.280 -0.012 -0.211 -12.217 3.680 28 A_G56:U71_A A 56 ? A 71 ? 28 1 1 A A 57 1_555 A U 70 1_555 -0.081 -0.092 0.254 -1.624 -8.142 6.424 29 A_A57:U70_A A 57 ? A 70 ? 20 1 1 A C 58 1_555 A G 69 1_555 0.170 -0.170 0.120 0.057 -2.844 -1.580 30 A_C58:G69_A A 58 ? A 69 ? 19 1 1 A G 59 1_555 A C 68 1_555 -0.132 -0.077 -0.189 -0.666 -3.269 -0.457 31 A_G59:C68_A A 59 ? A 68 ? 19 1 1 A C 60 1_555 A G 67 1_555 0.071 -0.034 0.042 3.699 -3.903 -0.067 32 A_C60:G67_A A 60 ? A 67 ? 19 1 1 A A 61 1_555 A U 66 1_555 -0.027 -0.093 0.368 -1.517 5.824 1.079 33 A_A61:U66_A A 61 ? A 66 ? 20 1 1 A U 62 1_555 A G 65 1_555 0.149 -5.600 0.512 -3.889 10.997 -118.944 34 A_U62:G65_A A 62 ? A 65 ? ? 6 1 A C 75 1_555 A G 98 1_555 -0.011 -0.094 0.448 3.094 -2.858 -0.486 35 A_C75:G98_A A 75 ? A 98 ? 19 1 1 A C 76 1_555 A G 97 1_555 0.170 -0.190 0.321 1.190 -12.936 -0.227 36 A_C76:G97_A A 76 ? A 97 ? 19 1 1 A G 77 1_555 A C 96 1_555 -0.161 -0.245 0.212 -13.468 -12.924 -4.413 37 A_G77:C96_A A 77 ? A 96 ? 19 1 1 A G 78 1_555 A G 95 1_555 -4.222 0.920 -0.121 -18.460 -15.525 -68.187 38 A_G78:G95_A A 78 ? A 95 ? ? 1 1 A A 79 1_555 A A 93 1_555 -1.571 -1.579 0.342 13.108 -14.292 178.325 39 A_A79:A93_A A 79 ? A 93 ? 1 2 1 A G 80 1_555 A C 92 1_555 -0.079 -0.226 -0.160 -4.549 -3.074 -1.899 40 A_G80:C92_A A 80 ? A 92 ? 19 1 1 A G 81 1_555 A C 91 1_555 -0.109 -0.216 -0.021 -0.619 -12.928 2.569 41 A_G81:C91_A A 81 ? A 91 ? 19 1 1 A G 82 1_555 A C 90 1_555 -0.099 -0.232 -0.171 -13.533 -1.743 -4.417 42 A_G82:C90_A A 82 ? A 90 ? 19 1 1 A U 84 1_555 A A 87 1_555 3.840 -0.461 -2.099 32.830 -25.931 -99.819 43 A_U84:A87_A A 84 ? A 87 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A CCC 107 1_555 A A 3 1_555 A U 106 1_555 0.012 -1.866 3.095 0.329 4.066 30.299 -4.272 0.036 2.826 7.735 -0.626 30.566 1 AA_G2A3:U106CCC107_AA A 2 ? A 107 ? A 3 ? A 106 ? 1 A A 3 1_555 A U 106 1_555 A A 4 1_555 A U 105 1_555 -0.038 -1.309 3.184 -0.534 8.550 33.207 -3.465 -0.014 2.771 14.660 0.916 34.264 2 AA_A3A4:U105U106_AA A 3 ? A 106 ? A 4 ? A 105 ? 1 A A 4 1_555 A U 105 1_555 A A 5 1_555 A U 104 1_555 1.235 -2.646 1.936 -8.345 -2.786 25.235 -5.311 -3.926 1.724 -6.144 18.401 26.701 3 AA_A4A5:U104U105_AA A 4 ? A 105 ? A 5 ? A 104 ? 1 A A 5 1_555 A U 104 1_555 A A 72 1_555 A G 6 1_555 0.563 -1.372 4.479 31.512 -3.636 96.553 -0.812 0.333 4.521 -2.389 -20.702 100.387 4 AA_A5A72:G6U104_AA A 5 ? A 104 ? A 72 ? A 6 ? 1 A A 72 1_555 A G 6 1_555 A C 73 1_555 A G 94 1_555 1.467 0.853 3.029 -3.464 1.377 89.010 0.582 -1.112 2.993 0.982 2.470 89.072 5 AA_A72C73:G94G6_AA A 72 ? A 6 ? A 73 ? A 94 ? 1 A C 73 1_555 A G 94 1_555 A A 74 1_555 A G 48 1_555 -0.113 -2.807 4.019 -5.422 -4.081 -33.354 5.564 -1.210 3.598 7.021 -9.326 -34.018 6 AA_C73A74:G48G94_AA A 73 ? A 94 ? A 74 ? A 48 ? 1 A G 31 1_555 A U 28 1_555 A G 32 1_555 A C 27 1_555 -0.508 -3.580 1.649 120.910 -108.753 132.581 -1.517 0.561 2.316 -54.860 -60.993 173.036 7 AA_G31G32:C27U28_AA A 31 ? A 28 ? A 32 ? A 27 ? 1 A G 32 1_555 A C 27 1_555 A C 33 1_555 A G 26 1_555 -0.306 -1.415 3.497 1.736 -4.317 32.214 -1.700 0.878 3.629 -7.730 -3.108 32.540 8 AA_G32C33:G26C27_AA A 32 ? A 27 ? A 33 ? A 26 ? 1 A C 33 1_555 A G 26 1_555 A A 34 1_555 A U 25 1_555 0.258 -1.373 3.124 -2.074 10.588 35.407 -3.443 -0.657 2.602 16.930 3.316 36.964 9 AA_C33A34:U25G26_AA A 33 ? A 26 ? A 34 ? A 25 ? 1 A A 34 1_555 A U 25 1_555 A C 35 1_555 A G 24 1_555 -0.243 -1.539 3.188 0.133 -0.308 30.803 -2.838 0.482 3.202 -0.580 -0.250 30.804 10 AA_A34C35:G24U25_AA A 34 ? A 25 ? A 35 ? A 24 ? 1 A C 35 1_555 A G 24 1_555 A G 36 1_555 A C 23 1_555 0.534 -2.273 3.154 0.904 6.117 32.522 -4.924 -0.799 2.707 10.801 -1.596 33.089 11 AA_C35G36:C23G24_AA A 35 ? A 24 ? A 36 ? A 23 ? 1 A G 36 1_555 A C 23 1_555 A C 39 1_555 A G 22 1_555 -1.512 -1.857 3.308 1.338 7.829 47.752 -2.851 1.946 2.946 9.593 -1.640 48.370 12 AA_G36C39:G22C23_AA A 36 ? A 23 ? A 39 ? A 22 ? 1 A C 39 1_555 A G 22 1_555 A G 41 1_555 A C 21 1_555 -2.741 -1.211 3.076 10.077 2.620 48.199 -1.620 3.931 2.427 3.166 -12.174 49.245 13 AA_C39G41:C21G22_AA A 39 ? A 22 ? A 41 ? A 21 ? 1 A G 41 1_555 A C 21 1_555 A G 42 1_555 A C 20 1_555 -0.726 -2.672 3.398 -1.015 5.804 36.389 -4.999 1.013 2.970 9.220 1.612 36.847 14 AA_G41G42:C20C21_AA A 41 ? A 21 ? A 42 ? A 20 ? 1 A G 42 1_555 A C 20 1_555 A U 43 1_555 A G 17 1_555 3.117 -2.569 3.477 -15.287 10.051 64.342 -2.704 -3.393 2.387 9.245 14.060 66.623 15 AA_G42U43:G17C20_AA A 42 ? A 20 ? A 43 ? A 17 ? 1 A U 43 1_555 A G 17 1_555 A C 44 1_555 A G 16 1_555 2.302 -1.732 3.279 -6.664 4.375 44.725 -2.605 -3.532 2.754 5.696 8.676 45.394 16 AA_U43C44:G16G17_AA A 43 ? A 17 ? A 44 ? A 16 ? 1 A C 44 1_555 A G 16 1_555 A C 45 1_555 A G 15 1_555 -0.427 -2.259 3.415 -3.755 8.856 29.021 -5.965 0.100 2.659 17.090 7.247 30.541 17 AA_C44C45:G15G16_AA A 44 ? A 16 ? A 45 ? A 15 ? 1 A C 45 1_555 A G 15 1_555 A A 46 1_555 A A 14 1_555 -1.963 -1.165 3.634 1.682 9.367 60.722 -1.619 2.008 3.389 9.205 -1.653 61.393 18 AA_C45A46:A14G15_AA A 45 ? A 15 ? A 46 ? A 14 ? 1 A A 46 1_555 A A 14 1_555 A A 47 1_555 A U 13 1_555 -4.214 -0.528 3.230 -3.601 -7.221 -10.345 8.140 -21.360 1.107 34.041 -16.974 -13.113 19 AA_A46A47:U13A14_AA A 46 ? A 14 ? A 47 ? A 13 ? 1 A A 47 1_555 A U 13 1_555 A G 50 1_555 A C 12 1_555 3.147 -2.539 3.130 1.673 7.029 80.470 -2.131 -2.389 2.993 5.431 -1.293 80.739 20 AA_A47G50:C12U13_AA A 47 ? A 13 ? A 50 ? A 12 ? 1 A G 50 1_555 A C 12 1_555 A A 51 1_555 A U 11 1_555 -0.734 -2.601 3.183 0.996 6.982 30.033 -6.090 1.552 2.504 13.245 -1.889 30.831 21 AA_G50A51:U11C12_AA A 50 ? A 12 ? A 51 ? A 11 ? 1 A A 51 1_555 A U 11 1_555 A C 52 1_555 A G 10 1_555 -0.070 -1.313 3.247 2.256 0.992 32.903 -2.479 0.501 3.196 1.749 -3.977 32.993 22 AA_A51C52:G10U11_AA A 51 ? A 11 ? A 52 ? A 10 ? 1 A C 52 1_555 A G 10 1_555 A A 53 1_555 A U 9 1_555 -0.088 -1.772 3.296 -1.675 8.512 29.745 -4.858 -0.138 2.699 16.155 3.179 30.957 23 AA_C52A53:U9G10_AA A 52 ? A 10 ? A 53 ? A 9 ? 1 A A 53 1_555 A U 9 1_555 A C 54 1_555 A G 8 1_555 0.364 -1.907 3.279 -2.557 3.642 30.892 -4.213 -1.146 3.001 6.792 4.769 31.203 24 AA_A53C54:G8U9_AA A 53 ? A 9 ? A 54 ? A 8 ? 1 A C 54 1_555 A G 8 1_555 A A 55 1_555 A U 7 1_555 0.441 -2.066 2.757 6.568 -5.973 25.800 -2.995 0.592 3.161 -12.900 -14.185 27.261 25 AA_C54A55:U7G8_AA A 54 ? A 8 ? A 55 ? A 7 ? 1 A A 55 1_555 A U 7 1_555 A G 56 1_555 A U 71 1_555 3.642 -0.935 3.285 -7.909 13.066 57.573 -1.545 -4.040 2.561 13.311 8.057 59.396 26 AA_A55G56:U71U7_AA A 55 ? A 7 ? A 56 ? A 71 ? 1 A G 56 1_555 A U 71 1_555 A A 57 1_555 A U 70 1_555 0.000 -0.963 3.203 -7.599 5.785 43.812 -1.770 -0.665 3.018 7.645 10.042 44.791 27 AA_G56A57:U70U71_AA A 56 ? A 71 ? A 57 ? A 70 ? 1 A A 57 1_555 A U 70 1_555 A C 58 1_555 A G 69 1_555 -0.380 -1.927 3.101 0.007 3.046 34.780 -3.638 0.634 2.927 5.083 -0.011 34.909 28 AA_A57C58:G69U70_AA A 57 ? A 70 ? A 58 ? A 69 ? 1 A C 58 1_555 A G 69 1_555 A G 59 1_555 A C 68 1_555 -0.246 -2.017 3.029 2.426 9.520 28.641 -5.460 0.878 2.231 18.567 -4.731 30.245 29 AA_C58G59:C68G69_AA A 58 ? A 69 ? A 59 ? A 68 ? 1 A G 59 1_555 A C 68 1_555 A C 60 1_555 A G 67 1_555 0.037 -1.874 3.168 -1.388 3.522 30.284 -4.217 -0.329 2.931 6.708 2.643 30.514 30 AA_G59C60:G67C68_AA A 59 ? A 68 ? A 60 ? A 67 ? 1 A C 60 1_555 A G 67 1_555 A A 61 1_555 A U 66 1_555 0.338 -1.743 3.072 -1.892 10.175 31.403 -4.542 -0.869 2.382 18.191 3.382 33.023 31 AA_C60A61:U66G67_AA A 60 ? A 67 ? A 61 ? A 66 ? 1 A A 61 1_555 A U 66 1_555 A U 62 1_555 A G 65 1_555 -1.743 -0.297 3.426 13.669 9.212 102.752 -0.324 1.308 3.220 5.870 -8.710 103.694 32 AA_A61U62:G65U66_AA A 61 ? A 66 ? A 62 ? A 65 ? 1 A C 75 1_555 A G 98 1_555 A C 76 1_555 A G 97 1_555 0.451 -2.431 3.045 1.646 7.025 26.748 -6.512 -0.606 2.365 14.845 -3.479 27.687 33 AA_C75C76:G97G98_AA A 75 ? A 98 ? A 76 ? A 97 ? 1 A C 76 1_555 A G 97 1_555 A G 77 1_555 A C 96 1_555 -0.659 -2.152 3.266 2.972 10.786 34.996 -4.743 1.413 2.456 17.395 -4.794 36.688 34 AA_C76G77:C96G97_AA A 76 ? A 97 ? A 77 ? A 96 ? 1 A G 77 1_555 A C 96 1_555 A G 78 1_555 A G 95 1_555 -2.898 -2.472 3.067 2.231 -0.307 21.779 -6.403 8.409 2.794 -0.810 -5.884 21.893 35 AA_G77G78:G95C96_AA A 77 ? A 96 ? A 78 ? A 95 ? 1 A G 78 1_555 A G 95 1_555 A A 79 1_555 A A 93 1_555 1.535 -0.120 3.425 -1.159 0.691 -72.503 0.077 1.257 3.447 -0.585 -0.980 -72.514 36 AA_G78A79:A93G95_AA A 78 ? A 95 ? A 79 ? A 93 ? 1 A A 79 1_555 A A 93 1_555 A G 80 1_555 A C 92 1_555 0.163 -1.557 3.066 -1.368 3.319 114.050 -0.962 -0.111 3.035 1.978 0.815 114.087 37 AA_A79G80:C92A93_AA A 79 ? A 93 ? A 80 ? A 92 ? 1 A G 80 1_555 A C 92 1_555 A G 81 1_555 A C 91 1_555 0.547 -2.073 3.311 -3.017 3.457 26.197 -5.382 -1.952 2.937 7.552 6.591 26.589 38 AA_G80G81:C91C92_AA A 80 ? A 92 ? A 81 ? A 91 ? 1 A G 81 1_555 A C 91 1_555 A G 82 1_555 A C 90 1_555 -0.085 -2.058 3.315 2.506 8.921 37.252 -4.185 0.424 2.757 13.707 -3.851 38.348 39 AA_G81G82:C90C91_AA A 81 ? A 91 ? A 82 ? A 90 ? 1 A G 82 1_555 A C 90 1_555 A U 84 1_555 A A 87 1_555 -2.885 -0.072 5.804 17.445 0.134 92.474 -0.054 2.528 5.329 0.092 -11.993 93.737 40 AA_G82U84:A87C90_AA A 82 ? A 90 ? A 84 ? A 87 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R01GM112940 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' F31GM119357 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' T32GM88118 3 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'MAGNESIUM ION' _pdbx_entity_nonpoly.comp_id MG # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? #