HEADER OXIDOREDUCTASE 08-JUN-18 6DNV TITLE CRYSTAL STRUCTURE OF NEISSERIA MENINGITIDIS DSBD N-TERMINAL DOMAIN IN TITLE 2 THE REDUCED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN-DISULFIDE REDUCTASE,DISULFIDE REDUCTASE; COMPND 5 EC: 1.8.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 662598; SOURCE 4 STRAIN: ALPHA14; SOURCE 5 GENE: DSBD, NMO_1340; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS DISULPHIDE REDUCTASE, DSB PROTEINS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.P.SMITH,B.HERAS,J.J.PAXMAN REVDAT 4 13-MAR-24 6DNV 1 REMARK REVDAT 3 07-NOV-18 6DNV 1 JRNL REVDAT 2 19-SEP-18 6DNV 1 JRNL REVDAT 1 12-SEP-18 6DNV 0 JRNL AUTH R.P.SMITH,B.MOHANTY,S.MOWLABOCCUS,J.J.PAXMAN,M.L.WILLIAMS, JRNL AUTH 2 S.J.HEADEY,G.WANG,P.SUBEDI,B.C.DOAK,C.M.KAHLER,M.J.SCANLON, JRNL AUTH 3 B.HERAS JRNL TITL STRUCTURAL AND BIOCHEMICAL INSIGHTS INTO THE DISULFIDE JRNL TITL 2 REDUCTASE MECHANISM OF DSBD, AN ESSENTIAL ENZYME FOR JRNL TITL 3 NEISSERIAL PATHOGENS. JRNL REF J. BIOL. CHEM. V. 293 16559 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30181210 JRNL DOI 10.1074/JBC.RA118.004847 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.P.SMITH,A.E.WHITTEN,J.J.PAXMAN,C.M.KAHLER,M.J.SCANLON, REMARK 1 AUTH 2 B.HERAS REMARK 1 TITL PRODUCTION, BIOPHYSICAL CHARACTERIZATION AND INITIAL REMARK 1 TITL 2 CRYSTALLIZATION STUDIES OF THE N- AND C-TERMINAL DOMAINS OF REMARK 1 TITL 3 DSBD, AN ESSENTIAL ENZYME IN NEISSERIA MENINGITIDIS. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 74 31 2018 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 29372905 REMARK 1 DOI 10.1107/S2053230X17017800 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1951 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 2256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7401 - 4.0384 1.00 2946 158 0.1532 0.1828 REMARK 3 2 4.0384 - 3.2058 1.00 2867 154 0.1468 0.1609 REMARK 3 3 3.2058 - 2.8007 1.00 2865 112 0.1790 0.2301 REMARK 3 4 2.8007 - 2.5446 1.00 2813 148 0.1757 0.1933 REMARK 3 5 2.5446 - 2.3623 1.00 2848 118 0.1728 0.1919 REMARK 3 6 2.3623 - 2.2230 1.00 2814 165 0.1708 0.2091 REMARK 3 7 2.2230 - 2.1117 1.00 2821 130 0.1639 0.1872 REMARK 3 8 2.1117 - 2.0198 1.00 2786 148 0.1653 0.1837 REMARK 3 9 2.0198 - 1.9420 1.00 2808 150 0.1582 0.1911 REMARK 3 10 1.9420 - 1.8750 1.00 2787 144 0.1709 0.2022 REMARK 3 11 1.8750 - 1.8164 1.00 2810 144 0.1852 0.1918 REMARK 3 12 1.8164 - 1.7644 1.00 2741 172 0.1961 0.2369 REMARK 3 13 1.7644 - 1.7180 1.00 2802 140 0.2275 0.2399 REMARK 3 14 1.7180 - 1.6761 1.00 2833 123 0.2435 0.2596 REMARK 3 15 1.6761 - 1.6380 1.00 2811 104 0.2553 0.2536 REMARK 3 16 1.6380 - 1.6031 1.00 2817 146 0.2753 0.3275 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2002 REMARK 3 ANGLE : 1.059 2727 REMARK 3 CHIRALITY : 0.049 280 REMARK 3 PLANARITY : 0.005 367 REMARK 3 DIHEDRAL : 12.970 723 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 242.9310 90.0873 66.2906 REMARK 3 T TENSOR REMARK 3 T11: 0.1388 T22: 0.0505 REMARK 3 T33: 0.1034 T12: 0.0044 REMARK 3 T13: -0.0125 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.5516 L22: 0.4610 REMARK 3 L33: 0.4300 L12: -0.2476 REMARK 3 L13: -0.1608 L23: -0.3031 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: 0.0230 S13: 0.0790 REMARK 3 S21: -0.1096 S22: -0.0111 S23: -0.0143 REMARK 3 S31: 0.0173 S32: 0.0454 S33: -0.0085 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 249.4807 84.6009 80.8557 REMARK 3 T TENSOR REMARK 3 T11: 0.1708 T22: 0.0988 REMARK 3 T33: 0.1122 T12: 0.0392 REMARK 3 T13: -0.0146 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.0730 L22: 0.0923 REMARK 3 L33: 0.3984 L12: -0.0074 REMARK 3 L13: -0.1599 L23: -0.0321 REMARK 3 S TENSOR REMARK 3 S11: -0.1001 S12: -0.1119 S13: 0.0929 REMARK 3 S21: 0.2141 S22: 0.0071 S23: -0.1353 REMARK 3 S31: 0.0102 S32: 0.1790 S33: -0.0061 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 245.9375 87.6024 58.5695 REMARK 3 T TENSOR REMARK 3 T11: 0.2424 T22: 0.1030 REMARK 3 T33: 0.1326 T12: 0.0463 REMARK 3 T13: -0.0247 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.3573 L22: 0.0649 REMARK 3 L33: 0.0274 L12: -0.0135 REMARK 3 L13: -0.0464 L23: 0.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.1071 S12: 0.0837 S13: 0.1200 REMARK 3 S21: -0.1962 S22: -0.1349 S23: -0.0687 REMARK 3 S31: 0.0943 S32: -0.0285 S33: 0.0302 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 237.1412 89.8302 65.0286 REMARK 3 T TENSOR REMARK 3 T11: 0.1747 T22: 0.0917 REMARK 3 T33: 0.1125 T12: 0.0035 REMARK 3 T13: -0.0182 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.1364 L22: 0.3518 REMARK 3 L33: 0.3151 L12: -0.0849 REMARK 3 L13: -0.2307 L23: 0.0502 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: 0.0263 S13: 0.0245 REMARK 3 S21: -0.1071 S22: 0.0134 S23: 0.0455 REMARK 3 S31: -0.0229 S32: -0.1528 S33: 0.0022 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 233.2724 81.8665 82.4840 REMARK 3 T TENSOR REMARK 3 T11: 0.4166 T22: 0.2128 REMARK 3 T33: 0.3234 T12: 0.0261 REMARK 3 T13: -0.1338 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.0106 L22: 0.0035 REMARK 3 L33: 0.1572 L12: 0.0022 REMARK 3 L13: 0.0138 L23: 0.0278 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: -0.1554 S13: 0.0059 REMARK 3 S21: 0.3373 S22: -0.1050 S23: -0.2828 REMARK 3 S31: -0.2646 S32: 0.3250 S33: -0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 217.5748 81.9419 71.5947 REMARK 3 T TENSOR REMARK 3 T11: 0.1479 T22: 0.1212 REMARK 3 T33: 0.2116 T12: -0.0353 REMARK 3 T13: -0.0602 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.0205 L22: 0.1075 REMARK 3 L33: 0.0617 L12: 0.0144 REMARK 3 L13: -0.0311 L23: -0.0076 REMARK 3 S TENSOR REMARK 3 S11: 0.1100 S12: 0.1955 S13: -0.0480 REMARK 3 S21: -0.1616 S22: 0.0701 S23: 0.0903 REMARK 3 S31: 0.0515 S32: 0.0537 S33: 0.0295 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 215.8159 88.3555 75.0105 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.0734 REMARK 3 T33: 0.2013 T12: -0.0432 REMARK 3 T13: -0.0532 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.6906 L22: 0.2862 REMARK 3 L33: 0.0130 L12: 0.2669 REMARK 3 L13: -0.0499 L23: 0.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.1624 S12: -0.1358 S13: 0.1126 REMARK 3 S21: 0.0369 S22: -0.0799 S23: 0.3819 REMARK 3 S31: 0.1172 S32: -0.0992 S33: 0.0101 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 215.0907 93.4919 59.5030 REMARK 3 T TENSOR REMARK 3 T11: 0.4303 T22: 0.2491 REMARK 3 T33: 0.2814 T12: -0.1329 REMARK 3 T13: -0.1352 T23: 0.0956 REMARK 3 L TENSOR REMARK 3 L11: 0.3670 L22: 0.0172 REMARK 3 L33: 0.3086 L12: 0.0538 REMARK 3 L13: 0.1765 L23: 0.0737 REMARK 3 S TENSOR REMARK 3 S11: -0.2046 S12: 0.3322 S13: 0.3325 REMARK 3 S21: -0.4833 S22: 0.1776 S23: 0.2539 REMARK 3 S31: -0.1209 S32: 0.0507 S33: 0.0941 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 219.3983 97.6326 80.4421 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: 0.0875 REMARK 3 T33: 0.2626 T12: -0.0171 REMARK 3 T13: 0.0338 T23: -0.0758 REMARK 3 L TENSOR REMARK 3 L11: 0.6926 L22: 0.1789 REMARK 3 L33: 0.5269 L12: -0.0361 REMARK 3 L13: -0.4502 L23: -0.1762 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: -0.2885 S13: 0.2735 REMARK 3 S21: 0.1133 S22: -0.0922 S23: 0.2899 REMARK 3 S31: -0.1824 S32: 0.0235 S33: -0.2812 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 214.9520 93.3829 77.5661 REMARK 3 T TENSOR REMARK 3 T11: 0.1746 T22: 0.0564 REMARK 3 T33: 0.2621 T12: -0.0072 REMARK 3 T13: -0.0116 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 1.2887 L22: 0.0807 REMARK 3 L33: 0.1893 L12: 0.1562 REMARK 3 L13: -0.2303 L23: -0.1137 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: -0.1992 S13: 0.4111 REMARK 3 S21: -0.0763 S22: -0.0448 S23: 0.3583 REMARK 3 S31: -0.1373 S32: -0.0080 S33: 0.0720 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 81 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 207.7071 89.4016 53.8204 REMARK 3 T TENSOR REMARK 3 T11: 0.6353 T22: 0.3088 REMARK 3 T33: 0.4704 T12: -0.1489 REMARK 3 T13: -0.2805 T23: 0.1467 REMARK 3 L TENSOR REMARK 3 L11: 0.0009 L22: 0.2205 REMARK 3 L33: 0.0058 L12: -0.0033 REMARK 3 L13: -0.0017 L23: -0.0273 REMARK 3 S TENSOR REMARK 3 S11: -0.1424 S12: 0.1006 S13: 0.1716 REMARK 3 S21: -0.0989 S22: 0.0398 S23: 0.0745 REMARK 3 S31: -0.0694 S32: 0.0009 S33: -0.1304 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 220.8145 88.5093 67.2386 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: 0.1307 REMARK 3 T33: 0.1253 T12: -0.1049 REMARK 3 T13: -0.0501 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.2636 L22: 0.5439 REMARK 3 L33: 0.2057 L12: -0.0546 REMARK 3 L13: -0.2081 L23: 0.1127 REMARK 3 S TENSOR REMARK 3 S11: -0.0393 S12: 0.0757 S13: 0.0605 REMARK 3 S21: -0.1538 S22: 0.1603 S23: 0.1191 REMARK 3 S31: 0.0729 S32: -0.0379 S33: 0.1312 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 229.5346 89.7420 80.1804 REMARK 3 T TENSOR REMARK 3 T11: 0.1877 T22: 0.1452 REMARK 3 T33: 0.1598 T12: -0.0250 REMARK 3 T13: -0.0265 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.4122 L22: 0.0797 REMARK 3 L33: 0.0603 L12: 0.1686 REMARK 3 L13: -0.1066 L23: -0.0639 REMARK 3 S TENSOR REMARK 3 S11: 0.0666 S12: -0.3456 S13: -0.0287 REMARK 3 S21: 0.2015 S22: -0.2334 S23: -0.0476 REMARK 3 S31: -0.0693 S32: -0.1482 S33: -0.0163 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 108 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 220.1587 83.8151 62.4350 REMARK 3 T TENSOR REMARK 3 T11: 0.2361 T22: 0.1452 REMARK 3 T33: 0.1115 T12: -0.2527 REMARK 3 T13: -0.1079 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 0.0144 L22: 0.0572 REMARK 3 L33: 0.0913 L12: -0.0279 REMARK 3 L13: 0.0373 L23: -0.0729 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: 0.0724 S13: 0.0317 REMARK 3 S21: -0.0862 S22: 0.1414 S23: -0.1443 REMARK 3 S31: 0.0159 S32: 0.0574 S33: 0.1741 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 212.4813 78.5509 63.0088 REMARK 3 T TENSOR REMARK 3 T11: 0.1935 T22: 0.1727 REMARK 3 T33: 0.1489 T12: -0.0773 REMARK 3 T13: -0.0482 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.4596 L22: 0.0732 REMARK 3 L33: 0.5667 L12: -0.1759 REMARK 3 L13: -0.5091 L23: 0.1886 REMARK 3 S TENSOR REMARK 3 S11: -0.1273 S12: -0.0747 S13: 0.0317 REMARK 3 S21: -0.2574 S22: 0.0930 S23: 0.2357 REMARK 3 S31: -0.0404 S32: 0.1708 S33: -0.0820 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DNV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47439 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.603 REMARK 200 RESOLUTION RANGE LOW (A) : 101.308 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14300 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 1.83200 REMARK 200 R SYM FOR SHELL (I) : 1.83200 REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M AMMONIUM SULFATE, 0.1 M TRIS PH REMARK 280 9.1, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 445 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 495 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 ASN A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 371 O HOH A 429 2.00 REMARK 500 O HOH A 420 O HOH A 475 2.05 REMARK 500 O HOH A 406 O HOH A 461 2.08 REMARK 500 O HOH B 273 O HOH B 352 2.09 REMARK 500 O HOH B 273 O HOH B 370 2.12 REMARK 500 O HOH A 496 O HOH A 498 2.14 REMARK 500 O HOH B 312 O HOH B 313 2.15 REMARK 500 O HOH B 317 O HOH B 318 2.15 REMARK 500 O HOH A 401 O HOH A 496 2.15 REMARK 500 O HOH A 410 O HOH A 476 2.16 REMARK 500 O HOH A 415 O HOH A 430 2.16 REMARK 500 O HOH B 223 O HOH B 335 2.17 REMARK 500 O HOH B 233 O HOH B 312 2.17 REMARK 500 O HOH A 427 O HOH A 462 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 453 O HOH B 371 3985 2.14 REMARK 500 O HOH A 399 O HOH B 362 3985 2.15 REMARK 500 O HOH A 434 O HOH A 447 1556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 73 -49.35 71.82 REMARK 500 HIS B 73 -52.47 75.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDCH7 RELATED DB: SASBDB DBREF 6DNV A 2 123 UNP C6S7X6 C6S7X6_NEIML 36 157 DBREF 6DNV B 2 123 UNP C6S7X6 C6S7X6_NEIML 36 157 SEQADV 6DNV SER A -1 UNP C6S7X6 EXPRESSION TAG SEQADV 6DNV ASN A 0 UNP C6S7X6 EXPRESSION TAG SEQADV 6DNV ALA A 1 UNP C6S7X6 EXPRESSION TAG SEQADV 6DNV VAL A 101 UNP C6S7X6 ALA 135 CONFLICT SEQADV 6DNV SER B -1 UNP C6S7X6 EXPRESSION TAG SEQADV 6DNV ASN B 0 UNP C6S7X6 EXPRESSION TAG SEQADV 6DNV ALA B 1 UNP C6S7X6 EXPRESSION TAG SEQADV 6DNV VAL B 101 UNP C6S7X6 ALA 135 ENGINEERED MUTATION SEQRES 1 A 125 SER ASN ALA ASN ASP LEU LEU PRO PRO GLU LYS ALA PHE SEQRES 2 A 125 VAL PRO GLU LEU ALA VAL ALA ASP ASP GLY VAL ASN VAL SEQRES 3 A 125 ARG PHE ARG ILE ALA ASP GLY TYR TYR MET TYR GLN ALA SEQRES 4 A 125 LYS ILE VAL GLY LYS THR ASP PRO ALA ASP LEU LEU GLY SEQRES 5 A 125 GLN PRO SER PHE SER LYS GLY GLU GLU LYS GLU ASP GLU SEQRES 6 A 125 PHE PHE GLY ARG GLN THR VAL TYR HIS HIS GLU ALA GLN SEQRES 7 A 125 VAL ALA PHE PRO TYR ALA LYS ALA VAL GLY GLU PRO TYR SEQRES 8 A 125 LYS LEU VAL LEU THR TYR GLN GLY CYS ALA GLU VAL GLY SEQRES 9 A 125 VAL CYS TYR PRO PRO VAL ASP THR GLU PHE ASP ILE SER SEQRES 10 A 125 GLY ASN GLY THR TYR HIS PRO GLN SEQRES 1 B 125 SER ASN ALA ASN ASP LEU LEU PRO PRO GLU LYS ALA PHE SEQRES 2 B 125 VAL PRO GLU LEU ALA VAL ALA ASP ASP GLY VAL ASN VAL SEQRES 3 B 125 ARG PHE ARG ILE ALA ASP GLY TYR TYR MET TYR GLN ALA SEQRES 4 B 125 LYS ILE VAL GLY LYS THR ASP PRO ALA ASP LEU LEU GLY SEQRES 5 B 125 GLN PRO SER PHE SER LYS GLY GLU GLU LYS GLU ASP GLU SEQRES 6 B 125 PHE PHE GLY ARG GLN THR VAL TYR HIS HIS GLU ALA GLN SEQRES 7 B 125 VAL ALA PHE PRO TYR ALA LYS ALA VAL GLY GLU PRO TYR SEQRES 8 B 125 LYS LEU VAL LEU THR TYR GLN GLY CYS ALA GLU VAL GLY SEQRES 9 B 125 VAL CYS TYR PRO PRO VAL ASP THR GLU PHE ASP ILE SER SEQRES 10 B 125 GLY ASN GLY THR TYR HIS PRO GLN HET SO4 A 201 5 HET SO4 A 202 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *373(H2 O) HELIX 1 AA1 PRO A 6 ALA A 10 1 5 HELIX 2 AA2 ALA A 37 ILE A 39 5 3 HELIX 3 AA3 ASN B 0 LEU B 4 5 5 HELIX 4 AA4 PRO B 6 ALA B 10 1 5 HELIX 5 AA5 ALA B 37 ILE B 39 5 3 SHEET 1 AA1 5 SER A 53 PHE A 54 0 SHEET 2 AA1 5 GLU A 74 PRO A 80 -1 O ALA A 78 N SER A 53 SHEET 3 AA1 5 GLY A 21 ILE A 28 -1 N VAL A 24 O VAL A 77 SHEET 4 AA1 5 PHE A 11 ALA A 18 -1 N ALA A 16 O ASN A 23 SHEET 5 AA1 5 GLY A 118 TYR A 120 -1 O GLY A 118 N VAL A 17 SHEET 1 AA2 5 GLU A 58 ASP A 62 0 SHEET 2 AA2 5 GLY A 66 TYR A 71 -1 O VAL A 70 N GLU A 58 SHEET 3 AA2 5 TYR A 32 TYR A 35 -1 N MET A 34 O TYR A 71 SHEET 4 AA2 5 GLY A 97 ALA A 99 -1 O CYS A 98 N TYR A 33 SHEET 5 AA2 5 VAL A 103 CYS A 104 -1 O VAL A 103 N ALA A 99 SHEET 1 AA3 3 VAL A 40 ASP A 44 0 SHEET 2 AA3 3 TYR A 89 TYR A 95 -1 O VAL A 92 N LYS A 42 SHEET 3 AA3 3 VAL A 108 ILE A 114 -1 O VAL A 108 N TYR A 95 SHEET 1 AA4 5 SER B 53 PHE B 54 0 SHEET 2 AA4 5 GLU B 74 PRO B 80 -1 O ALA B 78 N SER B 53 SHEET 3 AA4 5 GLY B 21 ILE B 28 -1 N VAL B 22 O PHE B 79 SHEET 4 AA4 5 PHE B 11 ALA B 18 -1 N ALA B 18 O GLY B 21 SHEET 5 AA4 5 GLY B 118 TYR B 120 -1 O GLY B 118 N VAL B 17 SHEET 1 AA5 5 GLU B 58 ASP B 62 0 SHEET 2 AA5 5 GLY B 66 HIS B 72 -1 O GLN B 68 N LYS B 60 SHEET 3 AA5 5 TYR B 32 TYR B 35 -1 N MET B 34 O TYR B 71 SHEET 4 AA5 5 GLY B 97 ALA B 99 -1 O CYS B 98 N TYR B 33 SHEET 5 AA5 5 VAL B 103 CYS B 104 -1 O VAL B 103 N ALA B 99 SHEET 1 AA6 3 VAL B 40 ASP B 44 0 SHEET 2 AA6 3 TYR B 89 TYR B 95 -1 O VAL B 92 N LYS B 42 SHEET 3 AA6 3 VAL B 108 ILE B 114 -1 O ILE B 114 N TYR B 89 CISPEP 1 ASP A 44 PRO A 45 0 3.41 CISPEP 2 ASP B 44 PRO B 45 0 3.76 SITE 1 AC1 5 ARG A 67 HOH A 308 HOH A 318 HOH A 355 SITE 2 AC1 5 HOH A 383 SITE 1 AC2 4 ALA A 1 ASN A 2 HOH A 301 HOH A 316 CRYST1 116.980 116.980 45.790 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008548 0.004935 0.000000 0.00000 SCALE2 0.000000 0.009871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021839 0.00000