HEADER DNA BINDING PROTEIN 08-JUN-18 6DNW TITLE SEQUENCE REQUIREMENTS OF THE LISTERIA INNOCUA PROPHAGE ATTP SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE INTEGRASE [BACTERIOPHAGE A118]; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: 133-341,417-452 [342-416 DELETED]; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (26-MER); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (26-MER); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA INNOCUA SEROVAR 6A (STRAIN ATCC BAA- SOURCE 3 680 / CLIP 11262); SOURCE 4 ORGANISM_TAXID: 272626; SOURCE 5 STRAIN: ATCC BAA-680 / CLIP 11262; SOURCE 6 ATCC: BAA-680; SOURCE 7 GENE: INT; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: LISTERIA INNOCUA CLIP11262; SOURCE 14 ORGANISM_TAXID: 272626; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: LISTERIA INNOCUA CLIP11262; SOURCE 18 ORGANISM_TAXID: 272626 KEYWDS SITE-SPECIFIC RECOMBINATION, PHAGE INTEGRASE, SERINE INTEGRASE, KEYWDS 2 ATTACHMENT SITE, INTEGRATION, SPECIFICITY, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,R.SHARP,K.RUTHERFORD,K.GUPTA,G.D.VAN DUYNE REVDAT 3 11-OCT-23 6DNW 1 REMARK REVDAT 2 24-OCT-18 6DNW 1 JRNL REVDAT 1 03-OCT-18 6DNW 0 JRNL AUTH H.LI,R.SHARP,K.RUTHERFORD,K.GUPTA,G.D.VAN DUYNE JRNL TITL SERINE INTEGRASE ATTP BINDING AND SPECIFICITY. JRNL REF J. MOL. BIOL. V. 430 4401 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 30227134 JRNL DOI 10.1016/J.JMB.2018.09.007 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 10749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9750 - 4.5205 0.95 2715 141 0.1873 0.2624 REMARK 3 2 4.5205 - 3.5888 0.97 2625 135 0.2015 0.1864 REMARK 3 3 3.5888 - 3.1353 0.95 2554 144 0.2520 0.2970 REMARK 3 4 3.1353 - 2.8488 0.88 2308 127 0.3309 0.3637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3178 REMARK 3 ANGLE : 0.563 4499 REMARK 3 CHIRALITY : 0.041 488 REMARK 3 PLANARITY : 0.001 386 REMARK 3 DIHEDRAL : 19.737 1716 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1641 9.4049 -19.6502 REMARK 3 T TENSOR REMARK 3 T11: 0.4313 T22: 0.4178 REMARK 3 T33: 0.6041 T12: 0.0689 REMARK 3 T13: 0.1544 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.5615 L22: 0.0377 REMARK 3 L33: 0.1023 L12: 0.0743 REMARK 3 L13: 0.0895 L23: -0.0233 REMARK 3 S TENSOR REMARK 3 S11: 0.4033 S12: 0.2003 S13: 0.8901 REMARK 3 S21: -0.1211 S22: -0.1714 S23: -0.6886 REMARK 3 S31: 0.1821 S32: 0.7169 S33: -0.0785 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8549 -5.4983 -12.5449 REMARK 3 T TENSOR REMARK 3 T11: 0.4121 T22: 0.4642 REMARK 3 T33: 0.3542 T12: -0.0507 REMARK 3 T13: 0.0348 T23: -0.0568 REMARK 3 L TENSOR REMARK 3 L11: 1.9976 L22: 6.8949 REMARK 3 L33: 5.9049 L12: -2.0208 REMARK 3 L13: 0.2221 L23: -1.5386 REMARK 3 S TENSOR REMARK 3 S11: 0.4258 S12: 0.6511 S13: -0.9331 REMARK 3 S21: -0.5992 S22: -0.5648 S23: 0.1927 REMARK 3 S31: -0.4769 S32: 0.0361 S33: 0.0914 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6527 -6.5668 2.0340 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.3470 REMARK 3 T33: 0.3665 T12: -0.0407 REMARK 3 T13: -0.0510 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 3.2683 L22: 4.3616 REMARK 3 L33: 3.8452 L12: -0.6563 REMARK 3 L13: 0.0802 L23: 0.7966 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: 0.0441 S13: -0.1938 REMARK 3 S21: 0.3570 S22: 0.0093 S23: -0.1063 REMARK 3 S31: 0.3825 S32: -0.3495 S33: -0.1142 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3998 7.4196 -6.3441 REMARK 3 T TENSOR REMARK 3 T11: 0.3596 T22: 0.4834 REMARK 3 T33: 0.3670 T12: 0.0937 REMARK 3 T13: -0.0517 T23: -0.0608 REMARK 3 L TENSOR REMARK 3 L11: 4.5149 L22: 8.1046 REMARK 3 L33: 7.8258 L12: -1.8231 REMARK 3 L13: -4.3035 L23: -1.4742 REMARK 3 S TENSOR REMARK 3 S11: 0.3566 S12: -0.1001 S13: 0.6475 REMARK 3 S21: -0.0327 S22: 0.1840 S23: -0.2894 REMARK 3 S31: -0.9177 S32: -0.6798 S33: -0.5576 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6107 4.5499 12.4809 REMARK 3 T TENSOR REMARK 3 T11: 0.5416 T22: 0.3348 REMARK 3 T33: 0.3848 T12: 0.0283 REMARK 3 T13: -0.1449 T23: -0.0843 REMARK 3 L TENSOR REMARK 3 L11: 7.1568 L22: 0.6217 REMARK 3 L33: 4.1596 L12: 2.0449 REMARK 3 L13: 1.5135 L23: 0.1382 REMARK 3 S TENSOR REMARK 3 S11: -0.0919 S12: -0.0767 S13: 0.8366 REMARK 3 S21: 0.7749 S22: 0.1238 S23: -0.0348 REMARK 3 S31: -0.6030 S32: -0.1102 S33: 0.2028 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 425 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3227 5.4099 32.6396 REMARK 3 T TENSOR REMARK 3 T11: 0.3835 T22: 0.2911 REMARK 3 T33: 0.4278 T12: 0.0369 REMARK 3 T13: -0.1534 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 4.0746 L22: 5.3646 REMARK 3 L33: 5.3935 L12: 1.2870 REMARK 3 L13: 0.4428 L23: -1.1672 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: -0.3668 S13: 0.0947 REMARK 3 S21: 0.4090 S22: -0.2691 S23: 0.0652 REMARK 3 S31: -0.1677 S32: -0.0189 S33: 0.2531 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 426 THROUGH 452 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6149 11.0684 27.4834 REMARK 3 T TENSOR REMARK 3 T11: 0.7373 T22: 0.4889 REMARK 3 T33: 0.7470 T12: 0.1722 REMARK 3 T13: -0.2012 T23: -0.2152 REMARK 3 L TENSOR REMARK 3 L11: 3.4992 L22: 0.9952 REMARK 3 L33: 5.8734 L12: -1.2556 REMARK 3 L13: 0.6434 L23: 1.4888 REMARK 3 S TENSOR REMARK 3 S11: -0.0122 S12: 0.1400 S13: 1.1812 REMARK 3 S21: -0.0131 S22: -0.7181 S23: 1.1878 REMARK 3 S31: -0.7442 S32: -0.9586 S33: 0.6327 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5458 -1.1959 44.6422 REMARK 3 T TENSOR REMARK 3 T11: 1.0892 T22: 0.5802 REMARK 3 T33: 0.4679 T12: -0.0039 REMARK 3 T13: -0.3127 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 4.2548 L22: 5.5093 REMARK 3 L33: 8.8912 L12: -1.5383 REMARK 3 L13: -0.8409 L23: -6.2734 REMARK 3 S TENSOR REMARK 3 S11: -0.0519 S12: -0.8251 S13: -0.0290 REMARK 3 S21: 1.3494 S22: 0.3006 S23: -0.6534 REMARK 3 S31: 0.3794 S32: -0.5521 S33: 0.2214 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7328 -3.3202 26.8540 REMARK 3 T TENSOR REMARK 3 T11: 0.9516 T22: 0.8623 REMARK 3 T33: 0.6014 T12: 0.0548 REMARK 3 T13: -0.0723 T23: -0.1658 REMARK 3 L TENSOR REMARK 3 L11: 6.1375 L22: 3.3724 REMARK 3 L33: 3.5028 L12: 3.9674 REMARK 3 L13: 4.2154 L23: 2.1529 REMARK 3 S TENSOR REMARK 3 S11: 0.2618 S12: 0.8804 S13: -0.4966 REMARK 3 S21: 0.5205 S22: 0.7624 S23: -0.9102 REMARK 3 S31: -1.1178 S32: 1.8325 S33: -1.0264 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9730 -4.6310 13.3145 REMARK 3 T TENSOR REMARK 3 T11: 0.3375 T22: 0.3151 REMARK 3 T33: 0.4860 T12: -0.0149 REMARK 3 T13: -0.0965 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 7.9713 L22: 9.2175 REMARK 3 L33: 7.5911 L12: -4.8479 REMARK 3 L13: 1.0597 L23: 1.7180 REMARK 3 S TENSOR REMARK 3 S11: 0.6577 S12: 0.5296 S13: -1.0507 REMARK 3 S21: 0.7162 S22: -0.3521 S23: -0.1666 REMARK 3 S31: 0.2309 S32: 0.0043 S33: -0.5252 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9287 -0.3373 -4.0047 REMARK 3 T TENSOR REMARK 3 T11: 0.5238 T22: 0.6574 REMARK 3 T33: 0.5344 T12: -0.0821 REMARK 3 T13: 0.1271 T23: -0.0511 REMARK 3 L TENSOR REMARK 3 L11: 2.8695 L22: 5.7627 REMARK 3 L33: 7.5713 L12: -2.6995 REMARK 3 L13: -3.3080 L23: 5.8033 REMARK 3 S TENSOR REMARK 3 S11: 0.6428 S12: 0.2950 S13: 0.7717 REMARK 3 S21: -1.3761 S22: 0.7941 S23: -1.1824 REMARK 3 S31: -1.3430 S32: 1.1941 S33: -1.5969 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9342 -0.7677 -21.6712 REMARK 3 T TENSOR REMARK 3 T11: 0.6610 T22: 0.6399 REMARK 3 T33: 0.4039 T12: 0.1268 REMARK 3 T13: 0.1564 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 4.0784 L22: 4.2914 REMARK 3 L33: 3.1806 L12: -1.5417 REMARK 3 L13: 1.2590 L23: -1.6874 REMARK 3 S TENSOR REMARK 3 S11: 0.8990 S12: 0.5617 S13: 0.4232 REMARK 3 S21: -1.3466 S22: -0.5180 S23: -0.6207 REMARK 3 S31: 0.2572 S32: 1.1580 S33: -0.2801 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6919 -0.1813 -17.2962 REMARK 3 T TENSOR REMARK 3 T11: 0.5537 T22: 0.5887 REMARK 3 T33: 0.5420 T12: 0.2106 REMARK 3 T13: 0.1408 T23: 0.1498 REMARK 3 L TENSOR REMARK 3 L11: 2.7249 L22: 2.5421 REMARK 3 L33: 5.6644 L12: 0.6807 REMARK 3 L13: -0.1548 L23: 2.2514 REMARK 3 S TENSOR REMARK 3 S11: 0.5571 S12: 0.3084 S13: 0.3356 REMARK 3 S21: -1.0470 S22: -0.4460 S23: -0.8407 REMARK 3 S31: 0.0895 S32: 0.7144 S33: -0.1409 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1933 -4.2649 4.7746 REMARK 3 T TENSOR REMARK 3 T11: 0.2595 T22: 0.7347 REMARK 3 T33: 0.6027 T12: 0.0628 REMARK 3 T13: -0.0763 T23: -0.1772 REMARK 3 L TENSOR REMARK 3 L11: 1.1473 L22: 0.0227 REMARK 3 L33: 0.2795 L12: -0.1487 REMARK 3 L13: 0.5473 L23: -0.0683 REMARK 3 S TENSOR REMARK 3 S11: -0.1827 S12: -0.1179 S13: -0.0084 REMARK 3 S21: 0.4266 S22: 1.1871 S23: -1.0509 REMARK 3 S31: 0.3773 S32: 1.0136 S33: -1.0410 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1016 -1.9911 22.9459 REMARK 3 T TENSOR REMARK 3 T11: 0.6729 T22: 0.4023 REMARK 3 T33: 0.4720 T12: 0.0428 REMARK 3 T13: -0.2470 T23: 0.0940 REMARK 3 L TENSOR REMARK 3 L11: 3.3035 L22: 4.6907 REMARK 3 L33: 4.6080 L12: -0.9446 REMARK 3 L13: -0.9924 L23: -4.0673 REMARK 3 S TENSOR REMARK 3 S11: 0.5828 S12: -0.4617 S13: -0.5804 REMARK 3 S21: -0.3124 S22: -0.4527 S23: -0.2831 REMARK 3 S31: 1.0850 S32: 1.4340 S33: 0.2642 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 21 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0563 -6.2483 37.6290 REMARK 3 T TENSOR REMARK 3 T11: 0.9024 T22: 1.0734 REMARK 3 T33: 0.9883 T12: 0.1624 REMARK 3 T13: -0.9636 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.9617 L22: 1.1066 REMARK 3 L33: 4.1393 L12: 0.3132 REMARK 3 L13: 2.2002 L23: 1.4248 REMARK 3 S TENSOR REMARK 3 S11: 0.0858 S12: -0.9296 S13: -0.3229 REMARK 3 S21: 0.2887 S22: 0.2170 S23: -0.3585 REMARK 3 S31: 0.2335 S32: 0.5386 S33: 0.1530 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 26 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9524 3.3327 46.1739 REMARK 3 T TENSOR REMARK 3 T11: 0.9397 T22: 1.1936 REMARK 3 T33: 1.2243 T12: -0.0940 REMARK 3 T13: -0.4221 T23: 0.2440 REMARK 3 L TENSOR REMARK 3 L11: 8.5668 L22: 5.4917 REMARK 3 L33: 5.2004 L12: 0.7583 REMARK 3 L13: 3.2484 L23: 0.9712 REMARK 3 S TENSOR REMARK 3 S11: 0.0853 S12: -0.4232 S13: 0.0208 REMARK 3 S21: -0.1781 S22: 0.6005 S23: 0.6035 REMARK 3 S31: 0.4755 S32: -0.7543 S33: -0.6458 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DNW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11185 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.849 REMARK 200 RESOLUTION RANGE LOW (A) : 39.971 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KIS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE OBTAINED BY HANGING DROP REMARK 280 VAPOR DIFFUSION AT 21OC IN 100 MM TRIS HCL PH 7.5, 200 MM REMARK 280 AMMONIUM SULFATE, AND 25% (W:V) POLYETHYLENE GLYCOL 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.14550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.94150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.55600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.94150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.14550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.55600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 336 REMARK 465 PHE A 337 REMARK 465 ALA A 338 REMARK 465 SER A 339 REMARK 465 ARG A 340 REMARK 465 ASN A 341 REMARK 465 ILE A 342 REMARK 465 ASP A 343 REMARK 465 LYS A 344 REMARK 465 GLU A 345 REMARK 465 ASP A 346 REMARK 465 GLU A 347 REMARK 465 LEU A 348 REMARK 465 ASP A 349 REMARK 465 SER A 350 REMARK 465 LEU A 351 REMARK 465 ASN A 352 REMARK 465 GLU A 353 REMARK 465 LYS A 354 REMARK 465 LEU A 355 REMARK 465 LYS A 356 REMARK 465 ILE A 357 REMARK 465 GLU A 358 REMARK 465 HIS A 359 REMARK 465 ALA A 360 REMARK 465 LYS A 361 REMARK 465 LYS A 362 REMARK 465 LYS A 363 REMARK 465 ARG A 364 REMARK 465 LEU A 365 REMARK 465 PHE A 366 REMARK 465 ASP A 367 REMARK 465 LEU A 368 REMARK 465 TYR A 369 REMARK 465 ILE A 370 REMARK 465 ASN A 371 REMARK 465 GLY A 372 REMARK 465 SER A 373 REMARK 465 TYR A 374 REMARK 465 GLU A 375 REMARK 465 VAL A 376 REMARK 465 SER A 377 REMARK 465 GLU A 378 REMARK 465 LEU A 379 REMARK 465 ASP A 380 REMARK 465 SER A 381 REMARK 465 MET A 382 REMARK 465 MET A 383 REMARK 465 ASN A 384 REMARK 465 ASP A 385 REMARK 465 ILE A 386 REMARK 465 ASP A 387 REMARK 465 ALA A 388 REMARK 465 GLN A 389 REMARK 465 ILE A 390 REMARK 465 ASN A 391 REMARK 465 TYR A 392 REMARK 465 TYR A 393 REMARK 465 GLU A 394 REMARK 465 ALA A 395 REMARK 465 GLN A 396 REMARK 465 ILE A 397 REMARK 465 GLU A 398 REMARK 465 ALA A 399 REMARK 465 ASN A 400 REMARK 465 GLU A 401 REMARK 465 GLU A 402 REMARK 465 LEU A 403 REMARK 465 LYS A 404 REMARK 465 LYS A 405 REMARK 465 ASN A 406 REMARK 465 LYS A 407 REMARK 465 LYS A 408 REMARK 465 ILE A 409 REMARK 465 GLN A 410 REMARK 465 GLU A 411 REMARK 465 ASN A 412 REMARK 465 LEU A 413 REMARK 465 ALA A 414 REMARK 465 ASP A 415 REMARK 465 LEU A 416 REMARK 465 ALA A 417 REMARK 465 THR A 418 REMARK 465 VAL A 419 REMARK 465 ASP A 420 REMARK 465 PHE A 421 REMARK 465 ASN A 422 REMARK 465 SER A 423 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 10 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG C 18 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 217 1.74 -67.61 REMARK 500 LEU A 268 55.03 -116.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 274 SG REMARK 620 2 CYS A 277 SG 117.8 REMARK 620 3 CYS A 302 SG 110.1 104.6 REMARK 620 4 CYS A 314 SG 103.9 111.5 108.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 DBREF 6DNW A 134 452 UNP Q928V6 Q928V6_LISIN 134 452 DBREF 6DNW B 1 26 PDB 6DNW 6DNW 1 26 DBREF 6DNW C 1 26 PDB 6DNW 6DNW 1 26 SEQRES 1 A 319 ASP ARG MET VAL MET GLY LYS ILE LYS ARG ILE GLU ALA SEQRES 2 A 319 GLY LEU PRO LEU THR THR ALA LYS GLY ARG THR PHE GLY SEQRES 3 A 319 TYR ASP VAL ILE ASP THR LYS LEU TYR ILE ASN GLU GLU SEQRES 4 A 319 GLU ALA LYS GLN LEU ARG LEU ILE TYR ASP ILE PHE GLU SEQRES 5 A 319 GLU GLU GLN SER ILE THR PHE LEU GLN LYS ARG LEU LYS SEQRES 6 A 319 LYS LEU GLY PHE LYS VAL ARG THR TYR ASN ARG TYR ASN SEQRES 7 A 319 ASN TRP LEU THR ASN ASP LEU TYR CYS GLY TYR VAL SER SEQRES 8 A 319 TYR LYS ASP LYS VAL HIS VAL LYS GLY ILE HIS GLU PRO SEQRES 9 A 319 ILE ILE SER GLU GLU GLN PHE TYR ARG VAL GLN GLU ILE SEQRES 10 A 319 PHE SER ARG MET GLY LYS ASN PRO ASN MET ASN LYS GLU SEQRES 11 A 319 SER ALA SER LEU LEU ASN ASN LEU VAL VAL CYS SER LYS SEQRES 12 A 319 CYS GLY LEU GLY PHE VAL HIS ARG ARG LYS ASP THR VAL SEQRES 13 A 319 SER ARG GLY LYS LYS TYR HIS TYR ARG TYR TYR SER CYS SEQRES 14 A 319 LYS THR TYR LYS HIS THR HIS GLU LEU GLU LYS CYS GLY SEQRES 15 A 319 ASN LYS ILE TRP ARG ALA ASP LYS LEU GLU GLU LEU ILE SEQRES 16 A 319 ILE ASP ARG VAL ASN ASN TYR SER PHE ALA SER ARG ASN SEQRES 17 A 319 ILE ASP LYS GLU ASP GLU LEU ASP SER LEU ASN GLU LYS SEQRES 18 A 319 LEU LYS ILE GLU HIS ALA LYS LYS LYS ARG LEU PHE ASP SEQRES 19 A 319 LEU TYR ILE ASN GLY SER TYR GLU VAL SER GLU LEU ASP SEQRES 20 A 319 SER MET MET ASN ASP ILE ASP ALA GLN ILE ASN TYR TYR SEQRES 21 A 319 GLU ALA GLN ILE GLU ALA ASN GLU GLU LEU LYS LYS ASN SEQRES 22 A 319 LYS LYS ILE GLN GLU ASN LEU ALA ASP LEU ALA THR VAL SEQRES 23 A 319 ASP PHE ASN SER LEU GLU PHE ARG GLU LYS GLN LEU TYR SEQRES 24 A 319 LEU LYS SER LEU ILE ASN LYS ILE TYR ILE ASP GLY GLU SEQRES 25 A 319 GLN VAL THR ILE GLU TRP LEU SEQRES 1 B 26 DG DT DT DT DA DG DT DT DC DC DT DC DG SEQRES 2 B 26 DT DT DT DT DC DT DC DT DC DG DT DT DG SEQRES 1 C 26 DC DC DA DA DC DG DA DG DA DG DA DA DA SEQRES 2 C 26 DA DC DG DA DG DG DA DA DC DT DA DA DA HET ZN A 501 1 HETNAM ZN ZINC ION FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *9(H2 O) HELIX 1 AA1 MET A 136 ALA A 146 1 11 HELIX 2 AA2 ASN A 170 GLN A 188 1 19 HELIX 3 AA3 SER A 189 LYS A 199 1 11 HELIX 4 AA4 THR A 206 ASN A 216 1 11 HELIX 5 AA5 ASP A 217 CYS A 220 5 4 HELIX 6 AA6 SER A 240 LYS A 256 1 17 HELIX 7 AA7 LYS A 303 HIS A 307 1 5 HELIX 8 AA8 ALA A 321 ASN A 334 1 14 HELIX 9 AA9 GLU A 425 LEU A 436 1 12 SHEET 1 AA1 2 TYR A 160 ILE A 163 0 SHEET 2 AA1 2 LYS A 166 ILE A 169 -1 O TYR A 168 N ASP A 161 SHEET 1 AA2 2 TYR A 222 TYR A 225 0 SHEET 2 AA2 2 VAL A 229 LYS A 232 -1 O VAL A 231 N VAL A 223 SHEET 1 AA3 3 VAL A 272 CYS A 274 0 SHEET 2 AA3 3 ILE A 437 ASP A 443 1 O ILE A 440 N VAL A 273 SHEET 3 AA3 3 GLN A 446 TRP A 451 -1 O THR A 448 N TYR A 441 SHEET 1 AA4 3 PHE A 281 SER A 290 0 SHEET 2 AA4 3 LYS A 293 CYS A 302 -1 O TYR A 295 N THR A 288 SHEET 3 AA4 3 TRP A 319 ARG A 320 -1 O TRP A 319 N TYR A 300 LINK SG CYS A 274 ZN ZN A 501 1555 1555 2.34 LINK SG CYS A 277 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 302 ZN ZN A 501 1555 1555 2.34 LINK SG CYS A 314 ZN ZN A 501 1555 1555 2.34 SITE 1 AC1 4 CYS A 274 CYS A 277 CYS A 302 CYS A 314 CRYST1 48.291 57.112 167.883 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017509 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005957 0.00000