data_6DPF # _entry.id 6DPF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DPF pdb_00006dpf 10.2210/pdb6dpf/pdb WWPDB D_1000235010 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DPF _pdbx_database_status.recvd_initial_deposition_date 2018-06-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Samara, N.L.' 1 ? 'Yang, W.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Struct. Mol. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first 715 _citation.page_last 721 _citation.title 'Cation trafficking propels RNA hydrolysis.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41594-018-0099-4 _citation.pdbx_database_id_PubMed 30076410 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Samara, N.L.' 1 ? primary 'Yang, W.' 2 0000-0002-3591-2195 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 96.200 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6DPF _cell.details ? _cell.formula_units_Z ? _cell.length_a 81.726 _cell.length_a_esd ? _cell.length_b 37.610 _cell.length_b_esd ? _cell.length_c 61.195 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribonuclease H' 15716.729 1 3.1.26.4 ? ? ? 2 polymer syn ;RNA (5'-R(*AP*CP*AP*U)-3') portion of cleaved RNA ; 1224.802 1 ? ? ? ? 3 polymer syn ;RNA (5'-R(P*CP*G)-3') portion of cleaved RNA ; 605.430 1 ? ? ? ? 4 polymer syn ;DNA (5'-D(*CP*GP*AP*TP*GP*T)-3') ; 1824.228 1 ? ? ? ? 5 non-polymer syn 'MANGANESE (II) ION' 54.938 5 ? ? ? ? 6 non-polymer syn 'IODIDE ION' 126.904 5 ? ? ? ? 7 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 8 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 9 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 10 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 11 water nat water 18.015 167 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNase H' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIKWV KDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; ;EEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIKWV KDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; A ? 2 polyribonucleotide no no ACAU ACAU B ? 3 polyribonucleotide no no CG CG b ? 4 polydeoxyribonucleotide no no '(DC)(DG)(DA)(DT)(DG)(DT)' CGATGT C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 GLU n 1 3 ILE n 1 4 ILE n 1 5 TRP n 1 6 GLU n 1 7 SER n 1 8 LEU n 1 9 SER n 1 10 VAL n 1 11 ASP n 1 12 VAL n 1 13 GLY n 1 14 SER n 1 15 GLN n 1 16 GLY n 1 17 ASN n 1 18 PRO n 1 19 GLY n 1 20 ILE n 1 21 VAL n 1 22 GLU n 1 23 TYR n 1 24 LYS n 1 25 GLY n 1 26 VAL n 1 27 ASP n 1 28 THR n 1 29 LYS n 1 30 THR n 1 31 GLY n 1 32 GLU n 1 33 VAL n 1 34 LEU n 1 35 PHE n 1 36 GLU n 1 37 ARG n 1 38 GLU n 1 39 PRO n 1 40 ILE n 1 41 PRO n 1 42 ILE n 1 43 GLY n 1 44 THR n 1 45 ASN n 1 46 ASN n 1 47 MET n 1 48 GLY n 1 49 GLU n 1 50 PHE n 1 51 LEU n 1 52 ALA n 1 53 ILE n 1 54 VAL n 1 55 HIS n 1 56 GLY n 1 57 LEU n 1 58 ARG n 1 59 TYR n 1 60 LEU n 1 61 LYS n 1 62 GLU n 1 63 ARG n 1 64 ASN n 1 65 SER n 1 66 ARG n 1 67 LYS n 1 68 PRO n 1 69 ILE n 1 70 TYR n 1 71 SER n 1 72 ASP n 1 73 SER n 1 74 GLN n 1 75 THR n 1 76 ALA n 1 77 ILE n 1 78 LYS n 1 79 TRP n 1 80 VAL n 1 81 LYS n 1 82 ASP n 1 83 LYS n 1 84 LYS n 1 85 ALA n 1 86 LYS n 1 87 SER n 1 88 THR n 1 89 LEU n 1 90 VAL n 1 91 ARG n 1 92 ASN n 1 93 GLU n 1 94 GLU n 1 95 THR n 1 96 ALA n 1 97 LEU n 1 98 ILE n 1 99 TRP n 1 100 LYS n 1 101 LEU n 1 102 VAL n 1 103 ASP n 1 104 GLU n 1 105 ALA n 1 106 GLU n 1 107 GLU n 1 108 TRP n 1 109 LEU n 1 110 ASN n 1 111 THR n 1 112 HIS n 1 113 THR n 1 114 TYR n 1 115 GLU n 1 116 THR n 1 117 PRO n 1 118 ILE n 1 119 LEU n 1 120 LYS n 1 121 TRP n 1 122 GLN n 1 123 THR n 1 124 ASP n 1 125 LYS n 1 126 TRP n 1 127 GLY n 1 128 GLU n 1 129 ILE n 1 130 LYS n 1 131 ALA n 1 132 ASP n 1 133 TYR n 1 134 GLY n 1 135 ARG n 1 136 LYS n 2 1 A n 2 2 C n 2 3 A n 2 4 U n 3 1 C n 3 2 G n 4 1 DC n 4 2 DG n 4 3 DA n 4 4 DT n 4 5 DG n 4 6 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 136 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rnhA, BH0863' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272558 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 4 synthetic ? 32630 ? 3 1 sample 1 2 synthetic ? 32630 ? 4 1 sample 1 6 synthetic ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP RNH1_BACHD Q9KEI9 ? 1 ;EEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIKWV KDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; 61 2 PDB 6DPF 6DPF ? 2 ? 1 3 PDB 6DPF 6DPF ? 3 ? 1 4 PDB 6DPF 6DPF ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6DPF A 1 ? 136 ? Q9KEI9 61 ? 196 ? 61 196 2 2 6DPF B 1 ? 4 ? 6DPF 1 ? 4 ? 1 4 3 3 6DPF b 1 ? 2 ? 6DPF 5 ? 6 ? 5 6 4 4 6DPF C 1 ? 6 ? 6DPF 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DPF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity 0.000 _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '14% PEG3350, 20% glycerol, 200 mM KI, and 25 mM CaCl2' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-12-16 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 22.370 _reflns.entry_id 6DPF _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.560 _reflns.d_resolution_low 19.920 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 25955 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 1.000 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 4.100 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 25955 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.560 _reflns_shell.d_res_low 1.580 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 981 _reflns_shell.percent_possible_all 74.600 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 1.000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 142.200 _refine.B_iso_mean 33.9396 _refine.B_iso_min 15.930 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'Structures refined in Phenix and nucleic acid and protein residues built in Coot' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DPF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.56 _refine.ls_d_res_low 19.92 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 25946 _refine.ls_number_reflns_R_free 1285 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.9100 _refine.ls_percent_reflns_R_free 4.9500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1644 _refine.ls_R_factor_R_free 0.2068 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1623 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1ZBL _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.6000 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.56 _refine_hist.d_res_low 19.92 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.number_atoms_solvent 167 _refine_hist.number_atoms_total 1576 _refine_hist.pdbx_number_residues_total 148 _refine_hist.pdbx_B_iso_mean_ligand 59.98 _refine_hist.pdbx_B_iso_mean_solvent 41.66 _refine_hist.pdbx_number_atoms_protein 1110 _refine_hist.pdbx_number_atoms_nucleic_acid 244 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 1466 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.044 ? 2020 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.056 ? 219 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 211 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 18.948 ? 831 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5563 1.6186 2570 . 113 2457 87.0000 . . . 0.3061 0.0000 0.2725 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 1.6186 1.6922 2886 . 143 2743 98.0000 . . . 0.2890 0.0000 0.2524 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 1.6922 1.7813 2900 . 144 2756 98.0000 . . . 0.2557 0.0000 0.2307 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 1.7813 1.8929 2932 . 147 2785 99.0000 . . . 0.2596 0.0000 0.2209 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 1.8929 2.0389 2928 . 133 2795 99.0000 . . . 0.2361 0.0000 0.1877 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.0389 2.2438 2924 . 153 2771 99.0000 . . . 0.1991 0.0000 0.1713 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.2438 2.5679 2936 . 146 2790 99.0000 . . . 0.2135 0.0000 0.1695 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.5679 3.2331 2928 . 166 2762 98.0000 . . . 0.2156 0.0000 0.1597 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 3.2331 19.9253 2942 . 140 2802 96.0000 . . . 0.1675 0.0000 0.1257 . . . . . . 9 . . . # _struct.entry_id 6DPF _struct.title ;Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 40 mM Mn2+ and 200 mM K+ for 40 s at 21 C ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DPF _struct_keywords.text ;protein-RNA-DNA complex, double helix, RNA hydrolysis, in crystallo catalysis, metal dependent catalysis, monovalent cations, divalent cations, HYDROLASE-DNA-RNA complex ; _struct_keywords.pdbx_keywords HYDROLASE/DNA/RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 6 ? K N N 6 ? L N N 6 ? M N N 7 ? N N N 7 ? O N N 8 ? P N N 7 ? Q N N 8 ? R N N 8 ? S N N 8 ? T N N 9 ? U N N 10 ? V N N 5 ? W N N 6 ? X N N 11 ? Y N N 11 ? Z N N 11 ? AA N N 11 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 44 ? ARG A 63 ? THR A 104 ARG A 123 1 ? 20 HELX_P HELX_P2 AA2 SER A 73 ? LYS A 83 ? SER A 133 LYS A 143 1 ? 11 HELX_P HELX_P3 AA3 THR A 95 ? ASN A 110 ? THR A 155 ASN A 170 1 ? 16 HELX_P HELX_P4 AA4 GLN A 122 ? GLY A 127 ? GLN A 182 GLY A 187 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 11 OD2 ? ? ? 1_555 E MN . MN ? ? A ASP 71 A MN 201 1_555 ? ? ? ? ? ? ? 2.035 ? ? metalc2 metalc ? ? A ASP 11 OD1 ? ? ? 1_555 F MN . MN ? ? A ASP 71 A MN 202 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc3 metalc ? ? A GLU 49 OE1 ? ? ? 1_555 F MN . MN ? ? A GLU 109 A MN 202 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc4 metalc ? ? A ASP 72 OD1 ? ? ? 1_555 F MN . MN ? ? A ASP 132 A MN 202 1_555 ? ? ? ? ? ? ? 2.004 ? ? metalc5 metalc ? ? A ASP 72 OD2 ? ? ? 1_555 F MN . MN ? ? A ASP 132 A MN 202 1_555 ? ? ? ? ? ? ? 2.572 ? ? metalc6 metalc ? ? A ASP 103 OD1 ? ? ? 1_555 G MN . MN ? ? A ASP 163 A MN 203 1_555 ? ? ? ? ? ? ? 2.260 ? ? metalc7 metalc ? ? A GLU 106 OE1 ? ? ? 1_555 G MN . MN ? ? A GLU 166 A MN 203 1_555 ? ? ? ? ? ? ? 2.055 ? ? metalc8 metalc ? ? A GLU 128 OE2 ? ? ? 1_555 U K . K ? ? A GLU 188 A K 217 1_555 ? ? ? ? ? ? ? 2.991 ? ? metalc9 metalc ? ? A ASP 132 OD1 ? ? ? 1_555 E MN . MN ? ? A ASP 192 A MN 201 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc10 metalc ? ? A LYS 136 O ? ? ? 1_555 H MN . MN ? ? A LYS 196 A MN 204 1_555 ? ? ? ? ? ? ? 2.223 ? ? metalc11 metalc ? ? E MN . MN ? ? ? 1_555 X HOH . O ? ? A MN 201 A HOH 330 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc12 metalc ? ? E MN . MN ? ? ? 1_555 X HOH . O ? ? A MN 201 A HOH 343 1_555 ? ? ? ? ? ? ? 2.078 ? ? metalc13 metalc ? ? E MN . MN ? ? ? 1_555 C C 1 OP3 ? ? A MN 201 b C 5 1_555 ? ? ? ? ? ? ? 2.153 ? ? metalc14 metalc ? ? E MN . MN ? ? ? 1_555 C C 1 OP1 ? ? A MN 201 b C 5 1_555 ? ? ? ? ? ? ? 2.534 ? ? metalc15 metalc ? ? F MN . MN ? ? ? 1_555 C C 1 OP1 ? ? A MN 202 b C 5 1_555 ? ? ? ? ? ? ? 2.033 ? ? metalc16 metalc ? ? G MN . MN ? ? ? 1_555 X HOH . O ? ? A MN 203 A HOH 320 4_556 ? ? ? ? ? ? ? 2.031 ? ? metalc17 metalc ? ? G MN . MN ? ? ? 1_555 X HOH . O ? ? A MN 203 A HOH 331 1_555 ? ? ? ? ? ? ? 2.398 ? ? metalc18 metalc ? ? G MN . MN ? ? ? 1_555 X HOH . O ? ? A MN 203 A HOH 381 4_556 ? ? ? ? ? ? ? 2.217 ? ? metalc19 metalc ? ? G MN . MN ? ? ? 1_555 X HOH . O ? ? A MN 203 A HOH 395 1_555 ? ? ? ? ? ? ? 2.113 ? ? metalc20 metalc ? ? H MN . MN ? ? ? 1_555 X HOH . O ? ? A MN 204 A HOH 398 1_555 ? ? ? ? ? ? ? 2.663 ? ? metalc21 metalc ? ? H MN . MN ? ? ? 1_555 AA HOH . O ? ? A MN 204 C HOH 101 4_545 ? ? ? ? ? ? ? 2.184 ? ? metalc22 metalc ? ? H MN . MN ? ? ? 1_555 AA HOH . O ? ? A MN 204 C HOH 106 4_545 ? ? ? ? ? ? ? 2.134 ? ? metalc23 metalc ? ? U K . K ? ? ? 1_555 X HOH . O ? ? A K 217 A HOH 330 1_555 ? ? ? ? ? ? ? 3.368 ? ? metalc24 metalc ? ? U K . K ? ? ? 1_555 X HOH . O ? ? A K 217 A HOH 365 1_555 ? ? ? ? ? ? ? 3.344 ? ? metalc25 metalc ? ? U K . K ? ? ? 1_555 Y HOH . O ? ? A K 217 B HOH 206 1_555 ? ? ? ? ? ? ? 2.702 ? ? metalc26 metalc ? ? U K . K ? ? ? 1_555 C C 1 OP2 ? ? A K 217 b C 5 1_555 ? ? ? ? ? ? ? 2.669 ? ? metalc27 metalc ? ? C G 2 O6 ? ? ? 1_555 V MN . MN ? ? b G 6 b MN 101 1_555 ? ? ? ? ? ? ? 2.787 ? ? metalc28 metalc ? ? V MN . MN ? ? ? 1_555 Z HOH . O ? ? b MN 101 b HOH 203 1_555 ? ? ? ? ? ? ? 2.408 ? ? metalc29 metalc ? ? V MN . MN ? ? ? 1_555 AA HOH . O ? ? b MN 101 C HOH 104 4_545 ? ? ? ? ? ? ? 2.218 ? ? hydrog1 hydrog ? ? B A 1 N1 ? ? ? 1_555 D DT 6 N3 ? ? B A 1 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B A 1 N6 ? ? ? 1_555 D DT 6 O4 ? ? B A 1 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B C 2 N3 ? ? ? 1_555 D DG 5 N1 ? ? B C 2 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B C 2 N4 ? ? ? 1_555 D DG 5 O6 ? ? B C 2 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B C 2 O2 ? ? ? 1_555 D DG 5 N2 ? ? B C 2 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B A 3 N1 ? ? ? 1_555 D DT 4 N3 ? ? B A 3 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B A 3 N6 ? ? ? 1_555 D DT 4 O4 ? ? B A 3 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B U 4 N3 ? ? ? 1_555 D DA 3 N1 ? ? B U 4 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B U 4 O4 ? ? ? 1_555 D DA 3 N6 ? ? B U 4 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C C 1 N3 ? ? ? 1_555 D DG 2 N1 ? ? b C 5 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C C 1 N4 ? ? ? 1_555 D DG 2 O6 ? ? b C 5 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C C 1 O2 ? ? ? 1_555 D DG 2 N2 ? ? b C 5 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C G 2 N1 ? ? ? 1_555 D DC 1 N3 ? ? b G 6 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C G 2 N2 ? ? ? 1_555 D DC 1 O2 ? ? b G 6 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C G 2 O6 ? ? ? 1_555 D DC 1 N4 ? ? b G 6 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 17 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 77 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 18 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 78 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.01 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 33 ? GLY A 43 ? VAL A 93 GLY A 103 AA1 2 GLY A 19 ? ASP A 27 ? GLY A 79 ASP A 87 AA1 3 LEU A 8 ? GLN A 15 ? LEU A 68 GLN A 75 AA1 4 ILE A 69 ? SER A 71 ? ILE A 129 SER A 131 AA1 5 ILE A 118 ? LYS A 120 ? ILE A 178 LYS A 180 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 40 ? O ILE A 100 N VAL A 21 ? N VAL A 81 AA1 2 3 O VAL A 26 ? O VAL A 86 N SER A 9 ? N SER A 69 AA1 3 4 N LEU A 8 ? N LEU A 68 O TYR A 70 ? O TYR A 130 AA1 4 5 N ILE A 69 ? N ILE A 129 O LEU A 119 ? O LEU A 179 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 201 ? 5 'binding site for residue MN A 201' AC2 Software A MN 202 ? 5 'binding site for residue MN A 202' AC3 Software A MN 203 ? 6 'binding site for residue MN A 203' AC4 Software A MN 204 ? 5 'binding site for residue MN A 204' AC5 Software A IOD 205 ? 1 'binding site for residue IOD A 205' AC6 Software A IOD 207 ? 3 'binding site for residue IOD A 207' AC7 Software A GOL 209 ? 6 'binding site for residue GOL A 209' AC8 Software A GOL 210 ? 7 'binding site for residue GOL A 210' AC9 Software A EDO 211 ? 3 'binding site for residue EDO A 211' AD1 Software A GOL 212 ? 5 'binding site for residue GOL A 212' AD2 Software A EDO 213 ? 3 'binding site for residue EDO A 213' AD3 Software A EDO 214 ? 3 'binding site for residue EDO A 214' AD4 Software A EDO 215 ? 5 'binding site for residue EDO A 215' AD5 Software A PGE 216 ? 8 'binding site for residue PGE A 216' AD6 Software A K 217 ? 4 'binding site for residue K A 217' AD7 Software b MN 101 ? 3 'binding site for residue MN b 101' AD8 Software b IOD 102 ? 1 'binding site for residue IOD b 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 11 ? ASP A 71 . ? 1_555 ? 2 AC1 5 ASP A 132 ? ASP A 192 . ? 1_555 ? 3 AC1 5 HOH X . ? HOH A 330 . ? 1_555 ? 4 AC1 5 HOH X . ? HOH A 343 . ? 1_555 ? 5 AC1 5 C C 1 ? C b 5 . ? 1_555 ? 6 AC2 5 ASP A 11 ? ASP A 71 . ? 1_555 ? 7 AC2 5 GLU A 49 ? GLU A 109 . ? 1_555 ? 8 AC2 5 ASP A 72 ? ASP A 132 . ? 1_555 ? 9 AC2 5 U B 4 ? U B 4 . ? 1_555 ? 10 AC2 5 C C 1 ? C b 5 . ? 1_555 ? 11 AC3 6 ASP A 103 ? ASP A 163 . ? 1_555 ? 12 AC3 6 GLU A 106 ? GLU A 166 . ? 1_555 ? 13 AC3 6 HOH X . ? HOH A 320 . ? 4_556 ? 14 AC3 6 HOH X . ? HOH A 331 . ? 1_555 ? 15 AC3 6 HOH X . ? HOH A 381 . ? 4_556 ? 16 AC3 6 HOH X . ? HOH A 395 . ? 1_555 ? 17 AC4 5 LYS A 136 ? LYS A 196 . ? 1_555 ? 18 AC4 5 HOH X . ? HOH A 398 . ? 1_555 ? 19 AC4 5 HOH AA . ? HOH C 101 . ? 4_545 ? 20 AC4 5 HOH AA . ? HOH C 104 . ? 4_545 ? 21 AC4 5 HOH AA . ? HOH C 106 . ? 4_545 ? 22 AC5 1 TYR A 23 ? TYR A 83 . ? 1_555 ? 23 AC6 3 ILE A 4 ? ILE A 64 . ? 1_555 ? 24 AC6 3 HOH X . ? HOH A 410 . ? 2_656 ? 25 AC6 3 HOH X . ? HOH A 443 . ? 1_555 ? 26 AC7 6 GLY A 16 ? GLY A 76 . ? 1_555 ? 27 AC7 6 ASN A 17 ? ASN A 77 . ? 1_555 ? 28 AC7 6 PRO A 18 ? PRO A 78 . ? 1_555 ? 29 AC7 6 HOH X . ? HOH A 314 . ? 1_555 ? 30 AC7 6 DG D 2 ? DG C 2 . ? 1_555 ? 31 AC7 6 DA D 3 ? DA C 3 . ? 1_555 ? 32 AC8 7 HIS A 55 ? HIS A 115 . ? 1_555 ? 33 AC8 7 TYR A 59 ? TYR A 119 . ? 1_555 ? 34 AC8 7 ARG A 63 ? ARG A 123 . ? 1_555 ? 35 AC8 7 GLU A 107 ? GLU A 167 . ? 4_546 ? 36 AC8 7 ASN A 110 ? ASN A 170 . ? 4_546 ? 37 AC8 7 GOL P . ? GOL A 212 . ? 1_555 ? 38 AC8 7 HOH X . ? HOH A 323 . ? 1_555 ? 39 AC9 3 THR A 88 ? THR A 148 . ? 1_555 ? 40 AC9 3 DT D 4 ? DT C 4 . ? 1_555 ? 41 AC9 3 DG D 5 ? DG C 5 . ? 1_555 ? 42 AD1 5 HIS A 55 ? HIS A 115 . ? 1_555 ? 43 AD1 5 ARG A 58 ? ARG A 118 . ? 1_555 ? 44 AD1 5 ASN A 110 ? ASN A 170 . ? 4_546 ? 45 AD1 5 GOL N . ? GOL A 210 . ? 1_555 ? 46 AD1 5 HOH X . ? HOH A 301 . ? 1_555 ? 47 AD2 3 THR A 113 ? THR A 173 . ? 1_555 ? 48 AD2 3 TYR A 114 ? TYR A 174 . ? 1_555 ? 49 AD2 3 HOH X . ? HOH A 308 . ? 1_555 ? 50 AD3 3 GLU A 6 ? GLU A 66 . ? 2_656 ? 51 AD3 3 LEU A 34 ? LEU A 94 . ? 1_555 ? 52 AD3 3 LYS A 67 ? LYS A 127 . ? 1_555 ? 53 AD4 5 GLU A 1 ? GLU A 61 . ? 3_455 ? 54 AD4 5 GLU A 2 ? GLU A 62 . ? 3_455 ? 55 AD4 5 ILE A 3 ? ILE A 63 . ? 3_455 ? 56 AD4 5 TRP A 5 ? TRP A 65 . ? 3_455 ? 57 AD4 5 HOH X . ? HOH A 405 . ? 1_555 ? 58 AD5 8 ILE A 42 ? ILE A 102 . ? 1_555 ? 59 AD5 8 THR A 88 ? THR A 148 . ? 1_555 ? 60 AD5 8 LEU A 89 ? LEU A 149 . ? 1_555 ? 61 AD5 8 VAL A 90 ? VAL A 150 . ? 1_555 ? 62 AD5 8 ASN A 92 ? ASN A 152 . ? 1_555 ? 63 AD5 8 GLU A 94 ? GLU A 154 . ? 1_555 ? 64 AD5 8 HOH X . ? HOH A 307 . ? 1_555 ? 65 AD5 8 HOH AA . ? HOH C 108 . ? 1_555 ? 66 AD6 4 GLU A 128 ? GLU A 188 . ? 1_555 ? 67 AD6 4 U B 4 ? U B 4 . ? 1_555 ? 68 AD6 4 HOH Y . ? HOH B 206 . ? 1_555 ? 69 AD6 4 C C 1 ? C b 5 . ? 1_555 ? 70 AD7 3 HOH AA . ? HOH C 104 . ? 4_545 ? 71 AD7 3 G C 2 ? G b 6 . ? 1_555 ? 72 AD7 3 HOH Z . ? HOH b 203 . ? 1_555 ? 73 AD8 1 HOH X . ? HOH A 391 . ? 1_555 ? # _atom_sites.entry_id 6DPF _atom_sites.fract_transf_matrix[1][1] 0.012236 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001329 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026589 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016437 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H I K MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 61 61 GLU GLU A . n A 1 2 GLU 2 62 62 GLU GLU A . n A 1 3 ILE 3 63 63 ILE ILE A . n A 1 4 ILE 4 64 64 ILE ILE A . n A 1 5 TRP 5 65 65 TRP TRP A . n A 1 6 GLU 6 66 66 GLU GLU A . n A 1 7 SER 7 67 67 SER SER A . n A 1 8 LEU 8 68 68 LEU LEU A . n A 1 9 SER 9 69 69 SER SER A . n A 1 10 VAL 10 70 70 VAL VAL A . n A 1 11 ASP 11 71 71 ASP ASP A . n A 1 12 VAL 12 72 72 VAL VAL A . n A 1 13 GLY 13 73 73 GLY GLY A . n A 1 14 SER 14 74 74 SER SER A . n A 1 15 GLN 15 75 75 GLN GLN A . n A 1 16 GLY 16 76 76 GLY GLY A . n A 1 17 ASN 17 77 77 ASN ASN A . n A 1 18 PRO 18 78 78 PRO PRO A . n A 1 19 GLY 19 79 79 GLY GLY A . n A 1 20 ILE 20 80 80 ILE ILE A . n A 1 21 VAL 21 81 81 VAL VAL A . n A 1 22 GLU 22 82 82 GLU GLU A . n A 1 23 TYR 23 83 83 TYR TYR A . n A 1 24 LYS 24 84 84 LYS LYS A . n A 1 25 GLY 25 85 85 GLY GLY A . n A 1 26 VAL 26 86 86 VAL VAL A . n A 1 27 ASP 27 87 87 ASP ASP A . n A 1 28 THR 28 88 88 THR THR A . n A 1 29 LYS 29 89 89 LYS LYS A . n A 1 30 THR 30 90 90 THR THR A . n A 1 31 GLY 31 91 91 GLY GLY A . n A 1 32 GLU 32 92 92 GLU GLU A . n A 1 33 VAL 33 93 93 VAL VAL A . n A 1 34 LEU 34 94 94 LEU LEU A . n A 1 35 PHE 35 95 95 PHE PHE A . n A 1 36 GLU 36 96 96 GLU GLU A . n A 1 37 ARG 37 97 97 ARG ARG A . n A 1 38 GLU 38 98 98 GLU GLU A . n A 1 39 PRO 39 99 99 PRO PRO A . n A 1 40 ILE 40 100 100 ILE ILE A . n A 1 41 PRO 41 101 101 PRO PRO A . n A 1 42 ILE 42 102 102 ILE ILE A . n A 1 43 GLY 43 103 103 GLY GLY A . n A 1 44 THR 44 104 104 THR THR A . n A 1 45 ASN 45 105 105 ASN ASN A . n A 1 46 ASN 46 106 106 ASN ASN A . n A 1 47 MET 47 107 107 MET MET A . n A 1 48 GLY 48 108 108 GLY GLY A . n A 1 49 GLU 49 109 109 GLU GLU A . n A 1 50 PHE 50 110 110 PHE PHE A . n A 1 51 LEU 51 111 111 LEU LEU A . n A 1 52 ALA 52 112 112 ALA ALA A . n A 1 53 ILE 53 113 113 ILE ILE A . n A 1 54 VAL 54 114 114 VAL VAL A . n A 1 55 HIS 55 115 115 HIS HIS A . n A 1 56 GLY 56 116 116 GLY GLY A . n A 1 57 LEU 57 117 117 LEU LEU A . n A 1 58 ARG 58 118 118 ARG ARG A . n A 1 59 TYR 59 119 119 TYR TYR A . n A 1 60 LEU 60 120 120 LEU LEU A . n A 1 61 LYS 61 121 121 LYS LYS A . n A 1 62 GLU 62 122 122 GLU GLU A . n A 1 63 ARG 63 123 123 ARG ARG A . n A 1 64 ASN 64 124 124 ASN ASN A . n A 1 65 SER 65 125 125 SER SER A . n A 1 66 ARG 66 126 126 ARG ARG A . n A 1 67 LYS 67 127 127 LYS LYS A . n A 1 68 PRO 68 128 128 PRO PRO A . n A 1 69 ILE 69 129 129 ILE ILE A . n A 1 70 TYR 70 130 130 TYR TYR A . n A 1 71 SER 71 131 131 SER SER A . n A 1 72 ASP 72 132 132 ASP ASP A . n A 1 73 SER 73 133 133 SER SER A . n A 1 74 GLN 74 134 134 GLN GLN A . n A 1 75 THR 75 135 135 THR THR A . n A 1 76 ALA 76 136 136 ALA ALA A . n A 1 77 ILE 77 137 137 ILE ILE A . n A 1 78 LYS 78 138 138 LYS LYS A . n A 1 79 TRP 79 139 139 TRP TRP A . n A 1 80 VAL 80 140 140 VAL VAL A . n A 1 81 LYS 81 141 141 LYS LYS A . n A 1 82 ASP 82 142 142 ASP ASP A . n A 1 83 LYS 83 143 143 LYS LYS A . n A 1 84 LYS 84 144 144 LYS LYS A . n A 1 85 ALA 85 145 145 ALA ALA A . n A 1 86 LYS 86 146 146 LYS LYS A . n A 1 87 SER 87 147 147 SER SER A . n A 1 88 THR 88 148 148 THR THR A . n A 1 89 LEU 89 149 149 LEU LEU A . n A 1 90 VAL 90 150 150 VAL VAL A . n A 1 91 ARG 91 151 151 ARG ARG A . n A 1 92 ASN 92 152 152 ASN ASN A . n A 1 93 GLU 93 153 153 GLU GLU A . n A 1 94 GLU 94 154 154 GLU GLU A . n A 1 95 THR 95 155 155 THR THR A . n A 1 96 ALA 96 156 156 ALA ALA A . n A 1 97 LEU 97 157 157 LEU LEU A . n A 1 98 ILE 98 158 158 ILE ILE A . n A 1 99 TRP 99 159 159 TRP TRP A . n A 1 100 LYS 100 160 160 LYS LYS A . n A 1 101 LEU 101 161 161 LEU LEU A . n A 1 102 VAL 102 162 162 VAL VAL A . n A 1 103 ASP 103 163 163 ASP ASP A . n A 1 104 GLU 104 164 164 GLU GLU A . n A 1 105 ALA 105 165 165 ALA ALA A . n A 1 106 GLU 106 166 166 GLU GLU A . n A 1 107 GLU 107 167 167 GLU GLU A . n A 1 108 TRP 108 168 168 TRP TRP A . n A 1 109 LEU 109 169 169 LEU LEU A . n A 1 110 ASN 110 170 170 ASN ASN A . n A 1 111 THR 111 171 171 THR THR A . n A 1 112 HIS 112 172 172 HIS HIS A . n A 1 113 THR 113 173 173 THR THR A . n A 1 114 TYR 114 174 174 TYR TYR A . n A 1 115 GLU 115 175 175 GLU GLU A . n A 1 116 THR 116 176 176 THR THR A . n A 1 117 PRO 117 177 177 PRO PRO A . n A 1 118 ILE 118 178 178 ILE ILE A . n A 1 119 LEU 119 179 179 LEU LEU A . n A 1 120 LYS 120 180 180 LYS LYS A . n A 1 121 TRP 121 181 181 TRP TRP A . n A 1 122 GLN 122 182 182 GLN GLN A . n A 1 123 THR 123 183 183 THR THR A . n A 1 124 ASP 124 184 184 ASP ASP A . n A 1 125 LYS 125 185 185 LYS LYS A . n A 1 126 TRP 126 186 186 TRP TRP A . n A 1 127 GLY 127 187 187 GLY GLY A . n A 1 128 GLU 128 188 188 GLU GLU A . n A 1 129 ILE 129 189 189 ILE ILE A . n A 1 130 LYS 130 190 190 LYS LYS A . n A 1 131 ALA 131 191 191 ALA ALA A . n A 1 132 ASP 132 192 192 ASP ASP A . n A 1 133 TYR 133 193 193 TYR TYR A . n A 1 134 GLY 134 194 194 GLY GLY A . n A 1 135 ARG 135 195 195 ARG ARG A . n A 1 136 LYS 136 196 196 LYS LYS A . n B 2 1 A 1 1 1 A A B . n B 2 2 C 2 2 2 C C B . n B 2 3 A 3 3 3 A A B . n B 2 4 U 4 4 4 U U B . n C 3 1 C 1 5 5 C C b . n C 3 2 G 2 6 6 G G b . n D 4 1 DC 1 1 1 DC DC C . n D 4 2 DG 2 2 2 DG DG C . n D 4 3 DA 3 3 3 DA DA C . n D 4 4 DT 4 4 4 DT DT C . n D 4 5 DG 5 5 5 DG DG C . n D 4 6 DT 6 6 6 DT DT C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MN 1 201 201 MN MN A . F 5 MN 1 202 202 MN MN A . G 5 MN 1 203 204 MN MN A . H 5 MN 1 204 205 MN MN A . I 6 IOD 1 205 1 IOD IOD A . J 6 IOD 1 206 2 IOD IOD A . K 6 IOD 1 207 3 IOD IOD A . L 6 IOD 1 208 4 IOD IOD A . M 7 GOL 1 209 1 GOL GOL A . N 7 GOL 1 210 2 GOL GOL A . O 8 EDO 1 211 3 EDO EDO A . P 7 GOL 1 212 4 GOL GOL A . Q 8 EDO 1 213 5 EDO EDO A . R 8 EDO 1 214 6 EDO EDO A . S 8 EDO 1 215 7 EDO EDO A . T 9 PGE 1 216 8 PGE PGE A . U 10 K 1 217 212 K K A . V 5 MN 1 101 206 MN MN b . W 6 IOD 1 102 5 IOD IOD b . X 11 HOH 1 301 190 HOH HOH A . X 11 HOH 2 302 193 HOH HOH A . X 11 HOH 3 303 214 HOH HOH A . X 11 HOH 4 304 213 HOH HOH A . X 11 HOH 5 305 52 HOH HOH A . X 11 HOH 6 306 238 HOH HOH A . X 11 HOH 7 307 30 HOH HOH A . X 11 HOH 8 308 128 HOH HOH A . X 11 HOH 9 309 130 HOH HOH A . X 11 HOH 10 310 194 HOH HOH A . X 11 HOH 11 311 282 HOH HOH A . X 11 HOH 12 312 167 HOH HOH A . X 11 HOH 13 313 277 HOH HOH A . X 11 HOH 14 314 295 HOH HOH A . X 11 HOH 15 315 60 HOH HOH A . X 11 HOH 16 316 247 HOH HOH A . X 11 HOH 17 317 302 HOH HOH A . X 11 HOH 18 318 169 HOH HOH A . X 11 HOH 19 319 286 HOH HOH A . X 11 HOH 20 320 272 HOH HOH A . X 11 HOH 21 321 2 HOH HOH A . X 11 HOH 22 322 42 HOH HOH A . X 11 HOH 23 323 49 HOH HOH A . X 11 HOH 24 324 276 HOH HOH A . X 11 HOH 25 325 205 HOH HOH A . X 11 HOH 26 326 288 HOH HOH A . X 11 HOH 27 327 53 HOH HOH A . X 11 HOH 28 328 21 HOH HOH A . X 11 HOH 29 329 229 HOH HOH A . X 11 HOH 30 330 64 HOH HOH A . X 11 HOH 31 331 215 HOH HOH A . X 11 HOH 32 332 153 HOH HOH A . X 11 HOH 33 333 267 HOH HOH A . X 11 HOH 34 334 248 HOH HOH A . X 11 HOH 35 335 62 HOH HOH A . X 11 HOH 36 336 69 HOH HOH A . X 11 HOH 37 337 14 HOH HOH A . X 11 HOH 38 338 200 HOH HOH A . X 11 HOH 39 339 262 HOH HOH A . X 11 HOH 40 340 120 HOH HOH A . X 11 HOH 41 341 106 HOH HOH A . X 11 HOH 42 342 28 HOH HOH A . X 11 HOH 43 343 232 HOH HOH A . X 11 HOH 44 344 23 HOH HOH A . X 11 HOH 45 345 17 HOH HOH A . X 11 HOH 46 346 47 HOH HOH A . X 11 HOH 47 347 126 HOH HOH A . X 11 HOH 48 348 156 HOH HOH A . X 11 HOH 49 349 44 HOH HOH A . X 11 HOH 50 350 57 HOH HOH A . X 11 HOH 51 351 59 HOH HOH A . X 11 HOH 52 352 237 HOH HOH A . X 11 HOH 53 353 8 HOH HOH A . X 11 HOH 54 354 202 HOH HOH A . X 11 HOH 55 355 170 HOH HOH A . X 11 HOH 56 356 143 HOH HOH A . X 11 HOH 57 357 270 HOH HOH A . X 11 HOH 58 358 34 HOH HOH A . X 11 HOH 59 359 161 HOH HOH A . X 11 HOH 60 360 84 HOH HOH A . X 11 HOH 61 361 76 HOH HOH A . X 11 HOH 62 362 135 HOH HOH A . X 11 HOH 63 363 160 HOH HOH A . X 11 HOH 64 364 162 HOH HOH A . X 11 HOH 65 365 22 HOH HOH A . X 11 HOH 66 366 20 HOH HOH A . X 11 HOH 67 367 27 HOH HOH A . X 11 HOH 68 368 254 HOH HOH A . X 11 HOH 69 369 4 HOH HOH A . X 11 HOH 70 370 294 HOH HOH A . X 11 HOH 71 371 7 HOH HOH A . X 11 HOH 72 372 176 HOH HOH A . X 11 HOH 73 373 9 HOH HOH A . X 11 HOH 74 374 55 HOH HOH A . X 11 HOH 75 375 33 HOH HOH A . X 11 HOH 76 376 96 HOH HOH A . X 11 HOH 77 377 50 HOH HOH A . X 11 HOH 78 378 306 HOH HOH A . X 11 HOH 79 379 46 HOH HOH A . X 11 HOH 80 380 139 HOH HOH A . X 11 HOH 81 381 249 HOH HOH A . X 11 HOH 82 382 216 HOH HOH A . X 11 HOH 83 383 264 HOH HOH A . X 11 HOH 84 384 86 HOH HOH A . X 11 HOH 85 385 180 HOH HOH A . X 11 HOH 86 386 1 HOH HOH A . X 11 HOH 87 387 168 HOH HOH A . X 11 HOH 88 388 208 HOH HOH A . X 11 HOH 89 389 26 HOH HOH A . X 11 HOH 90 390 104 HOH HOH A . X 11 HOH 91 391 291 HOH HOH A . X 11 HOH 92 392 244 HOH HOH A . X 11 HOH 93 393 301 HOH HOH A . X 11 HOH 94 394 284 HOH HOH A . X 11 HOH 95 395 92 HOH HOH A . X 11 HOH 96 396 290 HOH HOH A . X 11 HOH 97 397 275 HOH HOH A . X 11 HOH 98 398 317 HOH HOH A . X 11 HOH 99 399 198 HOH HOH A . X 11 HOH 100 400 51 HOH HOH A . X 11 HOH 101 401 257 HOH HOH A . X 11 HOH 102 402 172 HOH HOH A . X 11 HOH 103 403 91 HOH HOH A . X 11 HOH 104 404 315 HOH HOH A . X 11 HOH 105 405 250 HOH HOH A . X 11 HOH 106 406 66 HOH HOH A . X 11 HOH 107 407 151 HOH HOH A . X 11 HOH 108 408 236 HOH HOH A . X 11 HOH 109 409 124 HOH HOH A . X 11 HOH 110 410 82 HOH HOH A . X 11 HOH 111 411 303 HOH HOH A . X 11 HOH 112 412 171 HOH HOH A . X 11 HOH 113 413 289 HOH HOH A . X 11 HOH 114 414 299 HOH HOH A . X 11 HOH 115 415 305 HOH HOH A . X 11 HOH 116 416 207 HOH HOH A . X 11 HOH 117 417 263 HOH HOH A . X 11 HOH 118 418 309 HOH HOH A . X 11 HOH 119 419 102 HOH HOH A . X 11 HOH 120 420 68 HOH HOH A . X 11 HOH 121 421 300 HOH HOH A . X 11 HOH 122 422 218 HOH HOH A . X 11 HOH 123 423 240 HOH HOH A . X 11 HOH 124 424 285 HOH HOH A . X 11 HOH 125 425 260 HOH HOH A . X 11 HOH 126 426 148 HOH HOH A . X 11 HOH 127 427 129 HOH HOH A . X 11 HOH 128 428 123 HOH HOH A . X 11 HOH 129 429 273 HOH HOH A . X 11 HOH 130 430 73 HOH HOH A . X 11 HOH 131 431 224 HOH HOH A . X 11 HOH 132 432 108 HOH HOH A . X 11 HOH 133 433 136 HOH HOH A . X 11 HOH 134 434 287 HOH HOH A . X 11 HOH 135 435 144 HOH HOH A . X 11 HOH 136 436 308 HOH HOH A . X 11 HOH 137 437 18 HOH HOH A . X 11 HOH 138 438 304 HOH HOH A . X 11 HOH 139 439 283 HOH HOH A . X 11 HOH 140 440 179 HOH HOH A . X 11 HOH 141 441 74 HOH HOH A . X 11 HOH 142 442 206 HOH HOH A . X 11 HOH 143 443 203 HOH HOH A . Y 11 HOH 1 201 97 HOH HOH B . Y 11 HOH 2 202 79 HOH HOH B . Y 11 HOH 3 203 271 HOH HOH B . Y 11 HOH 4 204 147 HOH HOH B . Y 11 HOH 5 205 80 HOH HOH B . Y 11 HOH 6 206 269 HOH HOH B . Z 11 HOH 1 201 293 HOH HOH b . Z 11 HOH 2 202 133 HOH HOH b . Z 11 HOH 3 203 313 HOH HOH b . Z 11 HOH 4 204 231 HOH HOH b . AA 11 HOH 1 101 312 HOH HOH C . AA 11 HOH 2 102 114 HOH HOH C . AA 11 HOH 3 103 258 HOH HOH C . AA 11 HOH 4 104 310 HOH HOH C . AA 11 HOH 5 105 209 HOH HOH C . AA 11 HOH 6 106 311 HOH HOH C . AA 11 HOH 7 107 19 HOH HOH C . AA 11 HOH 8 108 256 HOH HOH C . AA 11 HOH 9 109 110 HOH HOH C . AA 11 HOH 10 110 281 HOH HOH C . AA 11 HOH 11 111 58 HOH HOH C . AA 11 HOH 12 112 316 HOH HOH C . AA 11 HOH 13 113 266 HOH HOH C . AA 11 HOH 14 114 142 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5790 ? 1 MORE -35 ? 1 'SSA (A^2)' 8380 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 111.9 ? 2 OD2 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O ? X HOH . ? A HOH 330 ? 1_555 89.1 ? 3 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O ? X HOH . ? A HOH 330 ? 1_555 88.1 ? 4 OD2 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O ? X HOH . ? A HOH 343 ? 1_555 86.2 ? 5 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O ? X HOH . ? A HOH 343 ? 1_555 85.5 ? 6 O ? X HOH . ? A HOH 330 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O ? X HOH . ? A HOH 343 ? 1_555 170.0 ? 7 OD2 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP3 ? C C 1 ? b C 5 ? 1_555 154.8 ? 8 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP3 ? C C 1 ? b C 5 ? 1_555 93.4 ? 9 O ? X HOH . ? A HOH 330 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP3 ? C C 1 ? b C 5 ? 1_555 92.1 ? 10 O ? X HOH . ? A HOH 343 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP3 ? C C 1 ? b C 5 ? 1_555 95.9 ? 11 OD2 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 93.8 ? 12 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 153.0 ? 13 O ? X HOH . ? A HOH 330 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 83.9 ? 14 O ? X HOH . ? A HOH 343 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 105.2 ? 15 OP3 ? C C 1 ? b C 5 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 61.3 ? 16 OD1 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OE1 ? A GLU 49 ? A GLU 109 ? 1_555 96.0 ? 17 OD1 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OD1 ? A ASP 72 ? A ASP 132 ? 1_555 132.8 ? 18 OE1 ? A GLU 49 ? A GLU 109 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OD1 ? A ASP 72 ? A ASP 132 ? 1_555 95.5 ? 19 OD1 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OD2 ? A ASP 72 ? A ASP 132 ? 1_555 101.9 ? 20 OE1 ? A GLU 49 ? A GLU 109 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OD2 ? A ASP 72 ? A ASP 132 ? 1_555 150.3 ? 21 OD1 ? A ASP 72 ? A ASP 132 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OD2 ? A ASP 72 ? A ASP 132 ? 1_555 55.1 ? 22 OD1 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 98.5 ? 23 OE1 ? A GLU 49 ? A GLU 109 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 111.0 ? 24 OD1 ? A ASP 72 ? A ASP 132 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 119.4 ? 25 OD2 ? A ASP 72 ? A ASP 132 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 89.8 ? 26 OD1 ? A ASP 103 ? A ASP 163 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 OE1 ? A GLU 106 ? A GLU 166 ? 1_555 97.5 ? 27 OD1 ? A ASP 103 ? A ASP 163 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? X HOH . ? A HOH 320 ? 4_556 171.8 ? 28 OE1 ? A GLU 106 ? A GLU 166 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? X HOH . ? A HOH 320 ? 4_556 85.9 ? 29 OD1 ? A ASP 103 ? A ASP 163 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? X HOH . ? A HOH 331 ? 1_555 96.9 ? 30 OE1 ? A GLU 106 ? A GLU 166 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? X HOH . ? A HOH 331 ? 1_555 89.5 ? 31 O ? X HOH . ? A HOH 320 ? 4_556 MN ? G MN . ? A MN 203 ? 1_555 O ? X HOH . ? A HOH 331 ? 1_555 90.5 ? 32 OD1 ? A ASP 103 ? A ASP 163 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? X HOH . ? A HOH 381 ? 4_556 98.6 ? 33 OE1 ? A GLU 106 ? A GLU 166 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? X HOH . ? A HOH 381 ? 4_556 163.6 ? 34 O ? X HOH . ? A HOH 320 ? 4_556 MN ? G MN . ? A MN 203 ? 1_555 O ? X HOH . ? A HOH 381 ? 4_556 77.7 ? 35 O ? X HOH . ? A HOH 331 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? X HOH . ? A HOH 381 ? 4_556 91.6 ? 36 OD1 ? A ASP 103 ? A ASP 163 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? X HOH . ? A HOH 395 ? 1_555 86.6 ? 37 OE1 ? A GLU 106 ? A GLU 166 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? X HOH . ? A HOH 395 ? 1_555 91.6 ? 38 O ? X HOH . ? A HOH 320 ? 4_556 MN ? G MN . ? A MN 203 ? 1_555 O ? X HOH . ? A HOH 395 ? 1_555 85.8 ? 39 O ? X HOH . ? A HOH 331 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? X HOH . ? A HOH 395 ? 1_555 176.1 ? 40 O ? X HOH . ? A HOH 381 ? 4_556 MN ? G MN . ? A MN 203 ? 1_555 O ? X HOH . ? A HOH 395 ? 1_555 86.2 ? 41 OE2 ? A GLU 128 ? A GLU 188 ? 1_555 K ? U K . ? A K 217 ? 1_555 O ? X HOH . ? A HOH 330 ? 1_555 51.7 ? 42 OE2 ? A GLU 128 ? A GLU 188 ? 1_555 K ? U K . ? A K 217 ? 1_555 O ? X HOH . ? A HOH 365 ? 1_555 63.7 ? 43 O ? X HOH . ? A HOH 330 ? 1_555 K ? U K . ? A K 217 ? 1_555 O ? X HOH . ? A HOH 365 ? 1_555 55.9 ? 44 OE2 ? A GLU 128 ? A GLU 188 ? 1_555 K ? U K . ? A K 217 ? 1_555 O ? Y HOH . ? B HOH 206 ? 1_555 119.7 ? 45 O ? X HOH . ? A HOH 330 ? 1_555 K ? U K . ? A K 217 ? 1_555 O ? Y HOH . ? B HOH 206 ? 1_555 170.0 ? 46 O ? X HOH . ? A HOH 365 ? 1_555 K ? U K . ? A K 217 ? 1_555 O ? Y HOH . ? B HOH 206 ? 1_555 127.6 ? 47 OE2 ? A GLU 128 ? A GLU 188 ? 1_555 K ? U K . ? A K 217 ? 1_555 OP2 ? C C 1 ? b C 5 ? 1_555 109.1 ? 48 O ? X HOH . ? A HOH 330 ? 1_555 K ? U K . ? A K 217 ? 1_555 OP2 ? C C 1 ? b C 5 ? 1_555 78.8 ? 49 O ? X HOH . ? A HOH 365 ? 1_555 K ? U K . ? A K 217 ? 1_555 OP2 ? C C 1 ? b C 5 ? 1_555 127.8 ? 50 O ? Y HOH . ? B HOH 206 ? 1_555 K ? U K . ? A K 217 ? 1_555 OP2 ? C C 1 ? b C 5 ? 1_555 101.6 ? 51 O ? A LYS 136 ? A LYS 196 ? 1_555 MN ? H MN . ? A MN 204 ? 1_555 O ? X HOH . ? A HOH 398 ? 1_555 83.0 ? 52 O ? A LYS 136 ? A LYS 196 ? 1_555 MN ? H MN . ? A MN 204 ? 1_555 O ? AA HOH . ? C HOH 101 ? 4_545 86.1 ? 53 O ? X HOH . ? A HOH 398 ? 1_555 MN ? H MN . ? A MN 204 ? 1_555 O ? AA HOH . ? C HOH 101 ? 4_545 82.0 ? 54 O ? A LYS 136 ? A LYS 196 ? 1_555 MN ? H MN . ? A MN 204 ? 1_555 O ? AA HOH . ? C HOH 106 ? 4_545 172.8 ? 55 O ? X HOH . ? A HOH 398 ? 1_555 MN ? H MN . ? A MN 204 ? 1_555 O ? AA HOH . ? C HOH 106 ? 4_545 102.6 ? 56 O ? AA HOH . ? C HOH 101 ? 4_545 MN ? H MN . ? A MN 204 ? 1_555 O ? AA HOH . ? C HOH 106 ? 4_545 90.2 ? 57 O6 ? C G 2 ? b G 6 ? 1_555 MN ? V MN . ? b MN 101 ? 1_555 O ? Z HOH . ? b HOH 203 ? 1_555 95.1 ? 58 O6 ? C G 2 ? b G 6 ? 1_555 MN ? V MN . ? b MN 101 ? 1_555 O ? AA HOH . ? C HOH 104 ? 4_545 94.1 ? 59 O ? Z HOH . ? b HOH 203 ? 1_555 MN ? V MN . ? b MN 101 ? 1_555 O ? AA HOH . ? C HOH 104 ? 4_545 167.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-08-15 2 'Structure model' 1 1 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 21 2 'Structure model' '_pdbx_struct_conn_angle.value' 22 2 'Structure model' '_struct_conn.pdbx_dist_value' 23 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 2 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 40.8951 -4.1477 18.2881 0.3056 0.6339 0.3732 0.0594 0.0348 0.0413 2.6881 4.2562 7.4674 0.5427 -3.2227 -3.9201 0.3035 -0.6194 0.3786 0.4177 -0.0319 -1.0680 -0.4550 -0.2266 2.5038 'X-RAY DIFFRACTION' 2 ? refined 19.5265 -6.2607 16.0512 0.2131 0.2218 0.1705 0.0167 -0.0171 -0.0178 5.2866 1.1623 4.1701 -0.6307 4.7437 -0.5533 0.1899 -0.0716 -0.2482 0.2275 -0.4202 0.0469 -0.1268 0.1996 0.0335 'X-RAY DIFFRACTION' 3 ? refined 28.2380 -11.5942 23.4419 0.2929 0.2097 0.3458 0.0839 -0.0288 0.0408 6.2934 5.5393 8.4555 -0.6797 -6.9194 0.9269 -0.1756 -0.0222 0.2593 -0.0328 -1.6196 -0.2314 0.1826 0.7318 0.3518 'X-RAY DIFFRACTION' 4 ? refined 10.5097 -4.9318 18.2303 0.2530 0.3204 0.2148 -0.0203 -0.0200 -0.0220 4.3132 5.7592 6.4332 -1.9033 2.0349 -6.0843 -0.0073 0.4330 -0.4941 -0.3610 -0.1680 0.3866 -0.1656 0.2860 -1.0747 'X-RAY DIFFRACTION' 5 ? refined 21.3298 0.5841 23.5928 0.1399 0.1578 0.1715 -0.0063 0.0200 -0.0034 6.6274 2.8601 7.7056 -1.3857 5.3913 -0.3020 0.0070 -0.0803 0.0537 -0.1394 -0.0046 0.0399 0.0684 -0.1566 -0.2045 'X-RAY DIFFRACTION' 6 ? refined 27.9527 3.6702 21.1197 0.1587 0.1590 0.1697 -0.0486 0.0261 0.0249 4.6753 1.9627 6.6834 -1.8592 2.8333 -0.0778 0.0985 -0.1005 -0.0006 0.0959 0.2014 -0.1500 -0.0923 -0.2163 0.1903 'X-RAY DIFFRACTION' 7 ? refined 11.3325 9.5529 15.7203 0.4308 0.4217 0.2839 0.2176 -0.0300 -0.0675 3.6843 1.7597 5.1711 2.0469 3.5446 0.8515 -0.1686 -0.3794 0.3962 -0.0948 0.7050 0.5346 -0.2793 -0.8400 -0.7114 'X-RAY DIFFRACTION' 8 ? refined 10.4778 5.0220 23.0046 0.2092 0.3528 0.2054 0.0553 0.0198 -0.0582 5.0841 5.4403 6.1548 0.1227 3.6439 0.2801 0.1702 -0.3541 0.1929 -0.3117 0.0046 0.4554 -0.0540 -0.0007 -0.9139 'X-RAY DIFFRACTION' 9 ? refined 26.6776 8.3106 29.8828 0.2301 0.2100 0.2119 -0.0099 0.0116 -0.0059 6.1904 4.2813 5.1123 -4.2818 -1.5744 3.6006 0.0995 0.2080 -0.3088 -0.4618 0.4387 -0.3936 -0.0731 -0.3639 0.4174 'X-RAY DIFFRACTION' 10 ? refined 34.5827 -0.8271 11.8640 0.2827 0.3491 0.2096 0.0620 0.0476 0.0357 1.9910 4.9444 5.0948 0.1744 1.2735 4.7244 0.2442 -0.1497 -0.0268 0.3959 0.0320 -0.4839 -0.4613 0.0535 0.4576 'X-RAY DIFFRACTION' 11 ? refined 25.2947 -9.5888 11.0867 0.2806 0.2506 0.2223 0.0953 -0.0323 -0.0298 4.5329 8.6080 7.9037 4.9683 -1.6670 2.9848 -0.0543 0.0810 -0.0317 0.3700 -0.0707 0.3015 -0.2734 0.2278 0.1248 'X-RAY DIFFRACTION' 12 ? refined 23.9495 1.2478 4.2840 0.3011 0.3335 0.1660 0.0906 0.0438 0.0215 1.9236 6.8496 3.7411 -1.9572 2.5089 -1.1516 0.1092 -0.3738 0.2756 0.3288 0.1736 -0.3432 -0.5850 0.0013 0.1947 'X-RAY DIFFRACTION' 13 ? refined 16.4946 3.5979 2.9387 0.4773 0.3225 0.1791 0.0837 -0.0555 0.0164 1.6105 4.4713 3.7374 -0.8279 -2.2549 2.6758 -0.0395 -0.2723 0.3174 0.1891 -0.0474 0.2470 -0.8686 -0.7843 -0.2366 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 61 A 66 '( CHAIN A AND RESID 61:66 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 67 A 87 '( CHAIN A AND RESID 67:87 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 88 A 96 '( CHAIN A AND RESID 88:96 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 97 A 104 '( CHAIN A AND RESID 97:104 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 105 A 122 '( CHAIN A AND RESID 105:122 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 123 A 142 '( CHAIN A AND RESID 123:142 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 143 A 152 '( CHAIN A AND RESID 143:152 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 153 A 169 '( CHAIN A AND RESID 153:169 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 170 A 177 '( CHAIN A AND RESID 170:177 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 A 178 A 186 '( CHAIN A AND RESID 178:186 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 11 11 A 187 A 196 '( CHAIN A AND RESID 187:196 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 12 12 B 1 B 4 '( CHAIN B AND RESID 1:4 ) OR ( CHAIN b AND RESID 5:6 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 13 12 b 5 b 6 '( CHAIN B AND RESID 1:4 ) OR ( CHAIN b AND RESID 5:6 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 14 13 C 1 C 6 '( CHAIN C AND RESID 1:6 )' ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.31 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10_2155 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # _pdbx_entry_details.compound_details 'The RNA chain B was split into 2 chains (B and b)' _pdbx_entry_details.entry_id 6DPF _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'The RNA chain B was split into 2 chains (B and b) at the position 4-5, where the cleavage occurs' _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 409 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 422 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.02 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P b C 5 ? ? OP3 b C 5 ? ? 1.511 1.607 -0.096 0.012 N 2 1 "O3'" C DG 2 ? ? "C3'" C DG 2 ? ? 1.377 1.419 -0.042 0.006 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N3 _pdbx_validate_rmsd_angle.auth_asym_id_1 b _pdbx_validate_rmsd_angle.auth_comp_id_1 C _pdbx_validate_rmsd_angle.auth_seq_id_1 5 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C4 _pdbx_validate_rmsd_angle.auth_asym_id_2 b _pdbx_validate_rmsd_angle.auth_comp_id_2 C _pdbx_validate_rmsd_angle.auth_seq_id_2 5 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C5 _pdbx_validate_rmsd_angle.auth_asym_id_3 b _pdbx_validate_rmsd_angle.auth_comp_id_3 C _pdbx_validate_rmsd_angle.auth_seq_id_3 5 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 119.35 _pdbx_validate_rmsd_angle.angle_target_value 121.90 _pdbx_validate_rmsd_angle.angle_deviation -2.55 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.40 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 441 ? 5.84 . 2 1 O ? A HOH 442 ? 6.26 . 3 1 O ? A HOH 443 ? 6.63 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B A 1 ? "O2'" ? B A 1 "O2'" 2 1 Y 1 b G 6 ? "O2'" ? C G 2 "O2'" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 DA OP3 O N N 146 DA P P N N 147 DA OP1 O N N 148 DA OP2 O N N 149 DA "O5'" O N N 150 DA "C5'" C N N 151 DA "C4'" C N R 152 DA "O4'" O N N 153 DA "C3'" C N S 154 DA "O3'" O N N 155 DA "C2'" C N N 156 DA "C1'" C N R 157 DA N9 N Y N 158 DA C8 C Y N 159 DA N7 N Y N 160 DA C5 C Y N 161 DA C6 C Y N 162 DA N6 N N N 163 DA N1 N Y N 164 DA C2 C Y N 165 DA N3 N Y N 166 DA C4 C Y N 167 DA HOP3 H N N 168 DA HOP2 H N N 169 DA "H5'" H N N 170 DA "H5''" H N N 171 DA "H4'" H N N 172 DA "H3'" H N N 173 DA "HO3'" H N N 174 DA "H2'" H N N 175 DA "H2''" H N N 176 DA "H1'" H N N 177 DA H8 H N N 178 DA H61 H N N 179 DA H62 H N N 180 DA H2 H N N 181 DC OP3 O N N 182 DC P P N N 183 DC OP1 O N N 184 DC OP2 O N N 185 DC "O5'" O N N 186 DC "C5'" C N N 187 DC "C4'" C N R 188 DC "O4'" O N N 189 DC "C3'" C N S 190 DC "O3'" O N N 191 DC "C2'" C N N 192 DC "C1'" C N R 193 DC N1 N N N 194 DC C2 C N N 195 DC O2 O N N 196 DC N3 N N N 197 DC C4 C N N 198 DC N4 N N N 199 DC C5 C N N 200 DC C6 C N N 201 DC HOP3 H N N 202 DC HOP2 H N N 203 DC "H5'" H N N 204 DC "H5''" H N N 205 DC "H4'" H N N 206 DC "H3'" H N N 207 DC "HO3'" H N N 208 DC "H2'" H N N 209 DC "H2''" H N N 210 DC "H1'" H N N 211 DC H41 H N N 212 DC H42 H N N 213 DC H5 H N N 214 DC H6 H N N 215 DG OP3 O N N 216 DG P P N N 217 DG OP1 O N N 218 DG OP2 O N N 219 DG "O5'" O N N 220 DG "C5'" C N N 221 DG "C4'" C N R 222 DG "O4'" O N N 223 DG "C3'" C N S 224 DG "O3'" O N N 225 DG "C2'" C N N 226 DG "C1'" C N R 227 DG N9 N Y N 228 DG C8 C Y N 229 DG N7 N Y N 230 DG C5 C Y N 231 DG C6 C N N 232 DG O6 O N N 233 DG N1 N N N 234 DG C2 C N N 235 DG N2 N N N 236 DG N3 N N N 237 DG C4 C Y N 238 DG HOP3 H N N 239 DG HOP2 H N N 240 DG "H5'" H N N 241 DG "H5''" H N N 242 DG "H4'" H N N 243 DG "H3'" H N N 244 DG "HO3'" H N N 245 DG "H2'" H N N 246 DG "H2''" H N N 247 DG "H1'" H N N 248 DG H8 H N N 249 DG H1 H N N 250 DG H21 H N N 251 DG H22 H N N 252 DT OP3 O N N 253 DT P P N N 254 DT OP1 O N N 255 DT OP2 O N N 256 DT "O5'" O N N 257 DT "C5'" C N N 258 DT "C4'" C N R 259 DT "O4'" O N N 260 DT "C3'" C N S 261 DT "O3'" O N N 262 DT "C2'" C N N 263 DT "C1'" C N R 264 DT N1 N N N 265 DT C2 C N N 266 DT O2 O N N 267 DT N3 N N N 268 DT C4 C N N 269 DT O4 O N N 270 DT C5 C N N 271 DT C7 C N N 272 DT C6 C N N 273 DT HOP3 H N N 274 DT HOP2 H N N 275 DT "H5'" H N N 276 DT "H5''" H N N 277 DT "H4'" H N N 278 DT "H3'" H N N 279 DT "HO3'" H N N 280 DT "H2'" H N N 281 DT "H2''" H N N 282 DT "H1'" H N N 283 DT H3 H N N 284 DT H71 H N N 285 DT H72 H N N 286 DT H73 H N N 287 DT H6 H N N 288 EDO C1 C N N 289 EDO O1 O N N 290 EDO C2 C N N 291 EDO O2 O N N 292 EDO H11 H N N 293 EDO H12 H N N 294 EDO HO1 H N N 295 EDO H21 H N N 296 EDO H22 H N N 297 EDO HO2 H N N 298 G OP3 O N N 299 G P P N N 300 G OP1 O N N 301 G OP2 O N N 302 G "O5'" O N N 303 G "C5'" C N N 304 G "C4'" C N R 305 G "O4'" O N N 306 G "C3'" C N S 307 G "O3'" O N N 308 G "C2'" C N R 309 G "O2'" O N N 310 G "C1'" C N R 311 G N9 N Y N 312 G C8 C Y N 313 G N7 N Y N 314 G C5 C Y N 315 G C6 C N N 316 G O6 O N N 317 G N1 N N N 318 G C2 C N N 319 G N2 N N N 320 G N3 N N N 321 G C4 C Y N 322 G HOP3 H N N 323 G HOP2 H N N 324 G "H5'" H N N 325 G "H5''" H N N 326 G "H4'" H N N 327 G "H3'" H N N 328 G "HO3'" H N N 329 G "H2'" H N N 330 G "HO2'" H N N 331 G "H1'" H N N 332 G H8 H N N 333 G H1 H N N 334 G H21 H N N 335 G H22 H N N 336 GLN N N N N 337 GLN CA C N S 338 GLN C C N N 339 GLN O O N N 340 GLN CB C N N 341 GLN CG C N N 342 GLN CD C N N 343 GLN OE1 O N N 344 GLN NE2 N N N 345 GLN OXT O N N 346 GLN H H N N 347 GLN H2 H N N 348 GLN HA H N N 349 GLN HB2 H N N 350 GLN HB3 H N N 351 GLN HG2 H N N 352 GLN HG3 H N N 353 GLN HE21 H N N 354 GLN HE22 H N N 355 GLN HXT H N N 356 GLU N N N N 357 GLU CA C N S 358 GLU C C N N 359 GLU O O N N 360 GLU CB C N N 361 GLU CG C N N 362 GLU CD C N N 363 GLU OE1 O N N 364 GLU OE2 O N N 365 GLU OXT O N N 366 GLU H H N N 367 GLU H2 H N N 368 GLU HA H N N 369 GLU HB2 H N N 370 GLU HB3 H N N 371 GLU HG2 H N N 372 GLU HG3 H N N 373 GLU HE2 H N N 374 GLU HXT H N N 375 GLY N N N N 376 GLY CA C N N 377 GLY C C N N 378 GLY O O N N 379 GLY OXT O N N 380 GLY H H N N 381 GLY H2 H N N 382 GLY HA2 H N N 383 GLY HA3 H N N 384 GLY HXT H N N 385 GOL C1 C N N 386 GOL O1 O N N 387 GOL C2 C N N 388 GOL O2 O N N 389 GOL C3 C N N 390 GOL O3 O N N 391 GOL H11 H N N 392 GOL H12 H N N 393 GOL HO1 H N N 394 GOL H2 H N N 395 GOL HO2 H N N 396 GOL H31 H N N 397 GOL H32 H N N 398 GOL HO3 H N N 399 HIS N N N N 400 HIS CA C N S 401 HIS C C N N 402 HIS O O N N 403 HIS CB C N N 404 HIS CG C Y N 405 HIS ND1 N Y N 406 HIS CD2 C Y N 407 HIS CE1 C Y N 408 HIS NE2 N Y N 409 HIS OXT O N N 410 HIS H H N N 411 HIS H2 H N N 412 HIS HA H N N 413 HIS HB2 H N N 414 HIS HB3 H N N 415 HIS HD1 H N N 416 HIS HD2 H N N 417 HIS HE1 H N N 418 HIS HE2 H N N 419 HIS HXT H N N 420 HOH O O N N 421 HOH H1 H N N 422 HOH H2 H N N 423 ILE N N N N 424 ILE CA C N S 425 ILE C C N N 426 ILE O O N N 427 ILE CB C N S 428 ILE CG1 C N N 429 ILE CG2 C N N 430 ILE CD1 C N N 431 ILE OXT O N N 432 ILE H H N N 433 ILE H2 H N N 434 ILE HA H N N 435 ILE HB H N N 436 ILE HG12 H N N 437 ILE HG13 H N N 438 ILE HG21 H N N 439 ILE HG22 H N N 440 ILE HG23 H N N 441 ILE HD11 H N N 442 ILE HD12 H N N 443 ILE HD13 H N N 444 ILE HXT H N N 445 IOD I I N N 446 K K K N N 447 LEU N N N N 448 LEU CA C N S 449 LEU C C N N 450 LEU O O N N 451 LEU CB C N N 452 LEU CG C N N 453 LEU CD1 C N N 454 LEU CD2 C N N 455 LEU OXT O N N 456 LEU H H N N 457 LEU H2 H N N 458 LEU HA H N N 459 LEU HB2 H N N 460 LEU HB3 H N N 461 LEU HG H N N 462 LEU HD11 H N N 463 LEU HD12 H N N 464 LEU HD13 H N N 465 LEU HD21 H N N 466 LEU HD22 H N N 467 LEU HD23 H N N 468 LEU HXT H N N 469 LYS N N N N 470 LYS CA C N S 471 LYS C C N N 472 LYS O O N N 473 LYS CB C N N 474 LYS CG C N N 475 LYS CD C N N 476 LYS CE C N N 477 LYS NZ N N N 478 LYS OXT O N N 479 LYS H H N N 480 LYS H2 H N N 481 LYS HA H N N 482 LYS HB2 H N N 483 LYS HB3 H N N 484 LYS HG2 H N N 485 LYS HG3 H N N 486 LYS HD2 H N N 487 LYS HD3 H N N 488 LYS HE2 H N N 489 LYS HE3 H N N 490 LYS HZ1 H N N 491 LYS HZ2 H N N 492 LYS HZ3 H N N 493 LYS HXT H N N 494 MET N N N N 495 MET CA C N S 496 MET C C N N 497 MET O O N N 498 MET CB C N N 499 MET CG C N N 500 MET SD S N N 501 MET CE C N N 502 MET OXT O N N 503 MET H H N N 504 MET H2 H N N 505 MET HA H N N 506 MET HB2 H N N 507 MET HB3 H N N 508 MET HG2 H N N 509 MET HG3 H N N 510 MET HE1 H N N 511 MET HE2 H N N 512 MET HE3 H N N 513 MET HXT H N N 514 MN MN MN N N 515 PGE C1 C N N 516 PGE O1 O N N 517 PGE C2 C N N 518 PGE O2 O N N 519 PGE C3 C N N 520 PGE C4 C N N 521 PGE O4 O N N 522 PGE C6 C N N 523 PGE C5 C N N 524 PGE O3 O N N 525 PGE H1 H N N 526 PGE H12 H N N 527 PGE HO1 H N N 528 PGE H2 H N N 529 PGE H22 H N N 530 PGE H3 H N N 531 PGE H32 H N N 532 PGE H4 H N N 533 PGE H42 H N N 534 PGE HO4 H N N 535 PGE H6 H N N 536 PGE H62 H N N 537 PGE H5 H N N 538 PGE H52 H N N 539 PHE N N N N 540 PHE CA C N S 541 PHE C C N N 542 PHE O O N N 543 PHE CB C N N 544 PHE CG C Y N 545 PHE CD1 C Y N 546 PHE CD2 C Y N 547 PHE CE1 C Y N 548 PHE CE2 C Y N 549 PHE CZ C Y N 550 PHE OXT O N N 551 PHE H H N N 552 PHE H2 H N N 553 PHE HA H N N 554 PHE HB2 H N N 555 PHE HB3 H N N 556 PHE HD1 H N N 557 PHE HD2 H N N 558 PHE HE1 H N N 559 PHE HE2 H N N 560 PHE HZ H N N 561 PHE HXT H N N 562 PRO N N N N 563 PRO CA C N S 564 PRO C C N N 565 PRO O O N N 566 PRO CB C N N 567 PRO CG C N N 568 PRO CD C N N 569 PRO OXT O N N 570 PRO H H N N 571 PRO HA H N N 572 PRO HB2 H N N 573 PRO HB3 H N N 574 PRO HG2 H N N 575 PRO HG3 H N N 576 PRO HD2 H N N 577 PRO HD3 H N N 578 PRO HXT H N N 579 SER N N N N 580 SER CA C N S 581 SER C C N N 582 SER O O N N 583 SER CB C N N 584 SER OG O N N 585 SER OXT O N N 586 SER H H N N 587 SER H2 H N N 588 SER HA H N N 589 SER HB2 H N N 590 SER HB3 H N N 591 SER HG H N N 592 SER HXT H N N 593 THR N N N N 594 THR CA C N S 595 THR C C N N 596 THR O O N N 597 THR CB C N R 598 THR OG1 O N N 599 THR CG2 C N N 600 THR OXT O N N 601 THR H H N N 602 THR H2 H N N 603 THR HA H N N 604 THR HB H N N 605 THR HG1 H N N 606 THR HG21 H N N 607 THR HG22 H N N 608 THR HG23 H N N 609 THR HXT H N N 610 TRP N N N N 611 TRP CA C N S 612 TRP C C N N 613 TRP O O N N 614 TRP CB C N N 615 TRP CG C Y N 616 TRP CD1 C Y N 617 TRP CD2 C Y N 618 TRP NE1 N Y N 619 TRP CE2 C Y N 620 TRP CE3 C Y N 621 TRP CZ2 C Y N 622 TRP CZ3 C Y N 623 TRP CH2 C Y N 624 TRP OXT O N N 625 TRP H H N N 626 TRP H2 H N N 627 TRP HA H N N 628 TRP HB2 H N N 629 TRP HB3 H N N 630 TRP HD1 H N N 631 TRP HE1 H N N 632 TRP HE3 H N N 633 TRP HZ2 H N N 634 TRP HZ3 H N N 635 TRP HH2 H N N 636 TRP HXT H N N 637 TYR N N N N 638 TYR CA C N S 639 TYR C C N N 640 TYR O O N N 641 TYR CB C N N 642 TYR CG C Y N 643 TYR CD1 C Y N 644 TYR CD2 C Y N 645 TYR CE1 C Y N 646 TYR CE2 C Y N 647 TYR CZ C Y N 648 TYR OH O N N 649 TYR OXT O N N 650 TYR H H N N 651 TYR H2 H N N 652 TYR HA H N N 653 TYR HB2 H N N 654 TYR HB3 H N N 655 TYR HD1 H N N 656 TYR HD2 H N N 657 TYR HE1 H N N 658 TYR HE2 H N N 659 TYR HH H N N 660 TYR HXT H N N 661 U OP3 O N N 662 U P P N N 663 U OP1 O N N 664 U OP2 O N N 665 U "O5'" O N N 666 U "C5'" C N N 667 U "C4'" C N R 668 U "O4'" O N N 669 U "C3'" C N S 670 U "O3'" O N N 671 U "C2'" C N R 672 U "O2'" O N N 673 U "C1'" C N R 674 U N1 N N N 675 U C2 C N N 676 U O2 O N N 677 U N3 N N N 678 U C4 C N N 679 U O4 O N N 680 U C5 C N N 681 U C6 C N N 682 U HOP3 H N N 683 U HOP2 H N N 684 U "H5'" H N N 685 U "H5''" H N N 686 U "H4'" H N N 687 U "H3'" H N N 688 U "HO3'" H N N 689 U "H2'" H N N 690 U "HO2'" H N N 691 U "H1'" H N N 692 U H3 H N N 693 U H5 H N N 694 U H6 H N N 695 VAL N N N N 696 VAL CA C N S 697 VAL C C N N 698 VAL O O N N 699 VAL CB C N N 700 VAL CG1 C N N 701 VAL CG2 C N N 702 VAL OXT O N N 703 VAL H H N N 704 VAL H2 H N N 705 VAL HA H N N 706 VAL HB H N N 707 VAL HG11 H N N 708 VAL HG12 H N N 709 VAL HG13 H N N 710 VAL HG21 H N N 711 VAL HG22 H N N 712 VAL HG23 H N N 713 VAL HXT H N N 714 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 DA OP3 P sing N N 145 DA OP3 HOP3 sing N N 146 DA P OP1 doub N N 147 DA P OP2 sing N N 148 DA P "O5'" sing N N 149 DA OP2 HOP2 sing N N 150 DA "O5'" "C5'" sing N N 151 DA "C5'" "C4'" sing N N 152 DA "C5'" "H5'" sing N N 153 DA "C5'" "H5''" sing N N 154 DA "C4'" "O4'" sing N N 155 DA "C4'" "C3'" sing N N 156 DA "C4'" "H4'" sing N N 157 DA "O4'" "C1'" sing N N 158 DA "C3'" "O3'" sing N N 159 DA "C3'" "C2'" sing N N 160 DA "C3'" "H3'" sing N N 161 DA "O3'" "HO3'" sing N N 162 DA "C2'" "C1'" sing N N 163 DA "C2'" "H2'" sing N N 164 DA "C2'" "H2''" sing N N 165 DA "C1'" N9 sing N N 166 DA "C1'" "H1'" sing N N 167 DA N9 C8 sing Y N 168 DA N9 C4 sing Y N 169 DA C8 N7 doub Y N 170 DA C8 H8 sing N N 171 DA N7 C5 sing Y N 172 DA C5 C6 sing Y N 173 DA C5 C4 doub Y N 174 DA C6 N6 sing N N 175 DA C6 N1 doub Y N 176 DA N6 H61 sing N N 177 DA N6 H62 sing N N 178 DA N1 C2 sing Y N 179 DA C2 N3 doub Y N 180 DA C2 H2 sing N N 181 DA N3 C4 sing Y N 182 DC OP3 P sing N N 183 DC OP3 HOP3 sing N N 184 DC P OP1 doub N N 185 DC P OP2 sing N N 186 DC P "O5'" sing N N 187 DC OP2 HOP2 sing N N 188 DC "O5'" "C5'" sing N N 189 DC "C5'" "C4'" sing N N 190 DC "C5'" "H5'" sing N N 191 DC "C5'" "H5''" sing N N 192 DC "C4'" "O4'" sing N N 193 DC "C4'" "C3'" sing N N 194 DC "C4'" "H4'" sing N N 195 DC "O4'" "C1'" sing N N 196 DC "C3'" "O3'" sing N N 197 DC "C3'" "C2'" sing N N 198 DC "C3'" "H3'" sing N N 199 DC "O3'" "HO3'" sing N N 200 DC "C2'" "C1'" sing N N 201 DC "C2'" "H2'" sing N N 202 DC "C2'" "H2''" sing N N 203 DC "C1'" N1 sing N N 204 DC "C1'" "H1'" sing N N 205 DC N1 C2 sing N N 206 DC N1 C6 sing N N 207 DC C2 O2 doub N N 208 DC C2 N3 sing N N 209 DC N3 C4 doub N N 210 DC C4 N4 sing N N 211 DC C4 C5 sing N N 212 DC N4 H41 sing N N 213 DC N4 H42 sing N N 214 DC C5 C6 doub N N 215 DC C5 H5 sing N N 216 DC C6 H6 sing N N 217 DG OP3 P sing N N 218 DG OP3 HOP3 sing N N 219 DG P OP1 doub N N 220 DG P OP2 sing N N 221 DG P "O5'" sing N N 222 DG OP2 HOP2 sing N N 223 DG "O5'" "C5'" sing N N 224 DG "C5'" "C4'" sing N N 225 DG "C5'" "H5'" sing N N 226 DG "C5'" "H5''" sing N N 227 DG "C4'" "O4'" sing N N 228 DG "C4'" "C3'" sing N N 229 DG "C4'" "H4'" sing N N 230 DG "O4'" "C1'" sing N N 231 DG "C3'" "O3'" sing N N 232 DG "C3'" "C2'" sing N N 233 DG "C3'" "H3'" sing N N 234 DG "O3'" "HO3'" sing N N 235 DG "C2'" "C1'" sing N N 236 DG "C2'" "H2'" sing N N 237 DG "C2'" "H2''" sing N N 238 DG "C1'" N9 sing N N 239 DG "C1'" "H1'" sing N N 240 DG N9 C8 sing Y N 241 DG N9 C4 sing Y N 242 DG C8 N7 doub Y N 243 DG C8 H8 sing N N 244 DG N7 C5 sing Y N 245 DG C5 C6 sing N N 246 DG C5 C4 doub Y N 247 DG C6 O6 doub N N 248 DG C6 N1 sing N N 249 DG N1 C2 sing N N 250 DG N1 H1 sing N N 251 DG C2 N2 sing N N 252 DG C2 N3 doub N N 253 DG N2 H21 sing N N 254 DG N2 H22 sing N N 255 DG N3 C4 sing N N 256 DT OP3 P sing N N 257 DT OP3 HOP3 sing N N 258 DT P OP1 doub N N 259 DT P OP2 sing N N 260 DT P "O5'" sing N N 261 DT OP2 HOP2 sing N N 262 DT "O5'" "C5'" sing N N 263 DT "C5'" "C4'" sing N N 264 DT "C5'" "H5'" sing N N 265 DT "C5'" "H5''" sing N N 266 DT "C4'" "O4'" sing N N 267 DT "C4'" "C3'" sing N N 268 DT "C4'" "H4'" sing N N 269 DT "O4'" "C1'" sing N N 270 DT "C3'" "O3'" sing N N 271 DT "C3'" "C2'" sing N N 272 DT "C3'" "H3'" sing N N 273 DT "O3'" "HO3'" sing N N 274 DT "C2'" "C1'" sing N N 275 DT "C2'" "H2'" sing N N 276 DT "C2'" "H2''" sing N N 277 DT "C1'" N1 sing N N 278 DT "C1'" "H1'" sing N N 279 DT N1 C2 sing N N 280 DT N1 C6 sing N N 281 DT C2 O2 doub N N 282 DT C2 N3 sing N N 283 DT N3 C4 sing N N 284 DT N3 H3 sing N N 285 DT C4 O4 doub N N 286 DT C4 C5 sing N N 287 DT C5 C7 sing N N 288 DT C5 C6 doub N N 289 DT C7 H71 sing N N 290 DT C7 H72 sing N N 291 DT C7 H73 sing N N 292 DT C6 H6 sing N N 293 EDO C1 O1 sing N N 294 EDO C1 C2 sing N N 295 EDO C1 H11 sing N N 296 EDO C1 H12 sing N N 297 EDO O1 HO1 sing N N 298 EDO C2 O2 sing N N 299 EDO C2 H21 sing N N 300 EDO C2 H22 sing N N 301 EDO O2 HO2 sing N N 302 G OP3 P sing N N 303 G OP3 HOP3 sing N N 304 G P OP1 doub N N 305 G P OP2 sing N N 306 G P "O5'" sing N N 307 G OP2 HOP2 sing N N 308 G "O5'" "C5'" sing N N 309 G "C5'" "C4'" sing N N 310 G "C5'" "H5'" sing N N 311 G "C5'" "H5''" sing N N 312 G "C4'" "O4'" sing N N 313 G "C4'" "C3'" sing N N 314 G "C4'" "H4'" sing N N 315 G "O4'" "C1'" sing N N 316 G "C3'" "O3'" sing N N 317 G "C3'" "C2'" sing N N 318 G "C3'" "H3'" sing N N 319 G "O3'" "HO3'" sing N N 320 G "C2'" "O2'" sing N N 321 G "C2'" "C1'" sing N N 322 G "C2'" "H2'" sing N N 323 G "O2'" "HO2'" sing N N 324 G "C1'" N9 sing N N 325 G "C1'" "H1'" sing N N 326 G N9 C8 sing Y N 327 G N9 C4 sing Y N 328 G C8 N7 doub Y N 329 G C8 H8 sing N N 330 G N7 C5 sing Y N 331 G C5 C6 sing N N 332 G C5 C4 doub Y N 333 G C6 O6 doub N N 334 G C6 N1 sing N N 335 G N1 C2 sing N N 336 G N1 H1 sing N N 337 G C2 N2 sing N N 338 G C2 N3 doub N N 339 G N2 H21 sing N N 340 G N2 H22 sing N N 341 G N3 C4 sing N N 342 GLN N CA sing N N 343 GLN N H sing N N 344 GLN N H2 sing N N 345 GLN CA C sing N N 346 GLN CA CB sing N N 347 GLN CA HA sing N N 348 GLN C O doub N N 349 GLN C OXT sing N N 350 GLN CB CG sing N N 351 GLN CB HB2 sing N N 352 GLN CB HB3 sing N N 353 GLN CG CD sing N N 354 GLN CG HG2 sing N N 355 GLN CG HG3 sing N N 356 GLN CD OE1 doub N N 357 GLN CD NE2 sing N N 358 GLN NE2 HE21 sing N N 359 GLN NE2 HE22 sing N N 360 GLN OXT HXT sing N N 361 GLU N CA sing N N 362 GLU N H sing N N 363 GLU N H2 sing N N 364 GLU CA C sing N N 365 GLU CA CB sing N N 366 GLU CA HA sing N N 367 GLU C O doub N N 368 GLU C OXT sing N N 369 GLU CB CG sing N N 370 GLU CB HB2 sing N N 371 GLU CB HB3 sing N N 372 GLU CG CD sing N N 373 GLU CG HG2 sing N N 374 GLU CG HG3 sing N N 375 GLU CD OE1 doub N N 376 GLU CD OE2 sing N N 377 GLU OE2 HE2 sing N N 378 GLU OXT HXT sing N N 379 GLY N CA sing N N 380 GLY N H sing N N 381 GLY N H2 sing N N 382 GLY CA C sing N N 383 GLY CA HA2 sing N N 384 GLY CA HA3 sing N N 385 GLY C O doub N N 386 GLY C OXT sing N N 387 GLY OXT HXT sing N N 388 GOL C1 O1 sing N N 389 GOL C1 C2 sing N N 390 GOL C1 H11 sing N N 391 GOL C1 H12 sing N N 392 GOL O1 HO1 sing N N 393 GOL C2 O2 sing N N 394 GOL C2 C3 sing N N 395 GOL C2 H2 sing N N 396 GOL O2 HO2 sing N N 397 GOL C3 O3 sing N N 398 GOL C3 H31 sing N N 399 GOL C3 H32 sing N N 400 GOL O3 HO3 sing N N 401 HIS N CA sing N N 402 HIS N H sing N N 403 HIS N H2 sing N N 404 HIS CA C sing N N 405 HIS CA CB sing N N 406 HIS CA HA sing N N 407 HIS C O doub N N 408 HIS C OXT sing N N 409 HIS CB CG sing N N 410 HIS CB HB2 sing N N 411 HIS CB HB3 sing N N 412 HIS CG ND1 sing Y N 413 HIS CG CD2 doub Y N 414 HIS ND1 CE1 doub Y N 415 HIS ND1 HD1 sing N N 416 HIS CD2 NE2 sing Y N 417 HIS CD2 HD2 sing N N 418 HIS CE1 NE2 sing Y N 419 HIS CE1 HE1 sing N N 420 HIS NE2 HE2 sing N N 421 HIS OXT HXT sing N N 422 HOH O H1 sing N N 423 HOH O H2 sing N N 424 ILE N CA sing N N 425 ILE N H sing N N 426 ILE N H2 sing N N 427 ILE CA C sing N N 428 ILE CA CB sing N N 429 ILE CA HA sing N N 430 ILE C O doub N N 431 ILE C OXT sing N N 432 ILE CB CG1 sing N N 433 ILE CB CG2 sing N N 434 ILE CB HB sing N N 435 ILE CG1 CD1 sing N N 436 ILE CG1 HG12 sing N N 437 ILE CG1 HG13 sing N N 438 ILE CG2 HG21 sing N N 439 ILE CG2 HG22 sing N N 440 ILE CG2 HG23 sing N N 441 ILE CD1 HD11 sing N N 442 ILE CD1 HD12 sing N N 443 ILE CD1 HD13 sing N N 444 ILE OXT HXT sing N N 445 LEU N CA sing N N 446 LEU N H sing N N 447 LEU N H2 sing N N 448 LEU CA C sing N N 449 LEU CA CB sing N N 450 LEU CA HA sing N N 451 LEU C O doub N N 452 LEU C OXT sing N N 453 LEU CB CG sing N N 454 LEU CB HB2 sing N N 455 LEU CB HB3 sing N N 456 LEU CG CD1 sing N N 457 LEU CG CD2 sing N N 458 LEU CG HG sing N N 459 LEU CD1 HD11 sing N N 460 LEU CD1 HD12 sing N N 461 LEU CD1 HD13 sing N N 462 LEU CD2 HD21 sing N N 463 LEU CD2 HD22 sing N N 464 LEU CD2 HD23 sing N N 465 LEU OXT HXT sing N N 466 LYS N CA sing N N 467 LYS N H sing N N 468 LYS N H2 sing N N 469 LYS CA C sing N N 470 LYS CA CB sing N N 471 LYS CA HA sing N N 472 LYS C O doub N N 473 LYS C OXT sing N N 474 LYS CB CG sing N N 475 LYS CB HB2 sing N N 476 LYS CB HB3 sing N N 477 LYS CG CD sing N N 478 LYS CG HG2 sing N N 479 LYS CG HG3 sing N N 480 LYS CD CE sing N N 481 LYS CD HD2 sing N N 482 LYS CD HD3 sing N N 483 LYS CE NZ sing N N 484 LYS CE HE2 sing N N 485 LYS CE HE3 sing N N 486 LYS NZ HZ1 sing N N 487 LYS NZ HZ2 sing N N 488 LYS NZ HZ3 sing N N 489 LYS OXT HXT sing N N 490 MET N CA sing N N 491 MET N H sing N N 492 MET N H2 sing N N 493 MET CA C sing N N 494 MET CA CB sing N N 495 MET CA HA sing N N 496 MET C O doub N N 497 MET C OXT sing N N 498 MET CB CG sing N N 499 MET CB HB2 sing N N 500 MET CB HB3 sing N N 501 MET CG SD sing N N 502 MET CG HG2 sing N N 503 MET CG HG3 sing N N 504 MET SD CE sing N N 505 MET CE HE1 sing N N 506 MET CE HE2 sing N N 507 MET CE HE3 sing N N 508 MET OXT HXT sing N N 509 PGE C1 O1 sing N N 510 PGE C1 C2 sing N N 511 PGE C1 H1 sing N N 512 PGE C1 H12 sing N N 513 PGE O1 HO1 sing N N 514 PGE C2 O2 sing N N 515 PGE C2 H2 sing N N 516 PGE C2 H22 sing N N 517 PGE O2 C3 sing N N 518 PGE C3 C4 sing N N 519 PGE C3 H3 sing N N 520 PGE C3 H32 sing N N 521 PGE C4 O3 sing N N 522 PGE C4 H4 sing N N 523 PGE C4 H42 sing N N 524 PGE O4 C6 sing N N 525 PGE O4 HO4 sing N N 526 PGE C6 C5 sing N N 527 PGE C6 H6 sing N N 528 PGE C6 H62 sing N N 529 PGE C5 O3 sing N N 530 PGE C5 H5 sing N N 531 PGE C5 H52 sing N N 532 PHE N CA sing N N 533 PHE N H sing N N 534 PHE N H2 sing N N 535 PHE CA C sing N N 536 PHE CA CB sing N N 537 PHE CA HA sing N N 538 PHE C O doub N N 539 PHE C OXT sing N N 540 PHE CB CG sing N N 541 PHE CB HB2 sing N N 542 PHE CB HB3 sing N N 543 PHE CG CD1 doub Y N 544 PHE CG CD2 sing Y N 545 PHE CD1 CE1 sing Y N 546 PHE CD1 HD1 sing N N 547 PHE CD2 CE2 doub Y N 548 PHE CD2 HD2 sing N N 549 PHE CE1 CZ doub Y N 550 PHE CE1 HE1 sing N N 551 PHE CE2 CZ sing Y N 552 PHE CE2 HE2 sing N N 553 PHE CZ HZ sing N N 554 PHE OXT HXT sing N N 555 PRO N CA sing N N 556 PRO N CD sing N N 557 PRO N H sing N N 558 PRO CA C sing N N 559 PRO CA CB sing N N 560 PRO CA HA sing N N 561 PRO C O doub N N 562 PRO C OXT sing N N 563 PRO CB CG sing N N 564 PRO CB HB2 sing N N 565 PRO CB HB3 sing N N 566 PRO CG CD sing N N 567 PRO CG HG2 sing N N 568 PRO CG HG3 sing N N 569 PRO CD HD2 sing N N 570 PRO CD HD3 sing N N 571 PRO OXT HXT sing N N 572 SER N CA sing N N 573 SER N H sing N N 574 SER N H2 sing N N 575 SER CA C sing N N 576 SER CA CB sing N N 577 SER CA HA sing N N 578 SER C O doub N N 579 SER C OXT sing N N 580 SER CB OG sing N N 581 SER CB HB2 sing N N 582 SER CB HB3 sing N N 583 SER OG HG sing N N 584 SER OXT HXT sing N N 585 THR N CA sing N N 586 THR N H sing N N 587 THR N H2 sing N N 588 THR CA C sing N N 589 THR CA CB sing N N 590 THR CA HA sing N N 591 THR C O doub N N 592 THR C OXT sing N N 593 THR CB OG1 sing N N 594 THR CB CG2 sing N N 595 THR CB HB sing N N 596 THR OG1 HG1 sing N N 597 THR CG2 HG21 sing N N 598 THR CG2 HG22 sing N N 599 THR CG2 HG23 sing N N 600 THR OXT HXT sing N N 601 TRP N CA sing N N 602 TRP N H sing N N 603 TRP N H2 sing N N 604 TRP CA C sing N N 605 TRP CA CB sing N N 606 TRP CA HA sing N N 607 TRP C O doub N N 608 TRP C OXT sing N N 609 TRP CB CG sing N N 610 TRP CB HB2 sing N N 611 TRP CB HB3 sing N N 612 TRP CG CD1 doub Y N 613 TRP CG CD2 sing Y N 614 TRP CD1 NE1 sing Y N 615 TRP CD1 HD1 sing N N 616 TRP CD2 CE2 doub Y N 617 TRP CD2 CE3 sing Y N 618 TRP NE1 CE2 sing Y N 619 TRP NE1 HE1 sing N N 620 TRP CE2 CZ2 sing Y N 621 TRP CE3 CZ3 doub Y N 622 TRP CE3 HE3 sing N N 623 TRP CZ2 CH2 doub Y N 624 TRP CZ2 HZ2 sing N N 625 TRP CZ3 CH2 sing Y N 626 TRP CZ3 HZ3 sing N N 627 TRP CH2 HH2 sing N N 628 TRP OXT HXT sing N N 629 TYR N CA sing N N 630 TYR N H sing N N 631 TYR N H2 sing N N 632 TYR CA C sing N N 633 TYR CA CB sing N N 634 TYR CA HA sing N N 635 TYR C O doub N N 636 TYR C OXT sing N N 637 TYR CB CG sing N N 638 TYR CB HB2 sing N N 639 TYR CB HB3 sing N N 640 TYR CG CD1 doub Y N 641 TYR CG CD2 sing Y N 642 TYR CD1 CE1 sing Y N 643 TYR CD1 HD1 sing N N 644 TYR CD2 CE2 doub Y N 645 TYR CD2 HD2 sing N N 646 TYR CE1 CZ doub Y N 647 TYR CE1 HE1 sing N N 648 TYR CE2 CZ sing Y N 649 TYR CE2 HE2 sing N N 650 TYR CZ OH sing N N 651 TYR OH HH sing N N 652 TYR OXT HXT sing N N 653 U OP3 P sing N N 654 U OP3 HOP3 sing N N 655 U P OP1 doub N N 656 U P OP2 sing N N 657 U P "O5'" sing N N 658 U OP2 HOP2 sing N N 659 U "O5'" "C5'" sing N N 660 U "C5'" "C4'" sing N N 661 U "C5'" "H5'" sing N N 662 U "C5'" "H5''" sing N N 663 U "C4'" "O4'" sing N N 664 U "C4'" "C3'" sing N N 665 U "C4'" "H4'" sing N N 666 U "O4'" "C1'" sing N N 667 U "C3'" "O3'" sing N N 668 U "C3'" "C2'" sing N N 669 U "C3'" "H3'" sing N N 670 U "O3'" "HO3'" sing N N 671 U "C2'" "O2'" sing N N 672 U "C2'" "C1'" sing N N 673 U "C2'" "H2'" sing N N 674 U "O2'" "HO2'" sing N N 675 U "C1'" N1 sing N N 676 U "C1'" "H1'" sing N N 677 U N1 C2 sing N N 678 U N1 C6 sing N N 679 U C2 O2 doub N N 680 U C2 N3 sing N N 681 U N3 C4 sing N N 682 U N3 H3 sing N N 683 U C4 O4 doub N N 684 U C4 C5 sing N N 685 U C5 C6 doub N N 686 U C5 H5 sing N N 687 U C6 H6 sing N N 688 VAL N CA sing N N 689 VAL N H sing N N 690 VAL N H2 sing N N 691 VAL CA C sing N N 692 VAL CA CB sing N N 693 VAL CA HA sing N N 694 VAL C O doub N N 695 VAL C OXT sing N N 696 VAL CB CG1 sing N N 697 VAL CB CG2 sing N N 698 VAL CB HB sing N N 699 VAL CG1 HG11 sing N N 700 VAL CG1 HG12 sing N N 701 VAL CG1 HG13 sing N N 702 VAL CG2 HG21 sing N N 703 VAL CG2 HG22 sing N N 704 VAL CG2 HG23 sing N N 705 VAL OXT HXT sing N N 706 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6DPF 'double helix' 6DPF 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B A 1 1_555 D DT 6 1_555 0.231 -0.201 -0.175 0.992 -3.108 -3.281 1 B_A1:DT6_C B 1 ? C 6 ? 20 1 1 B C 2 1_555 D DG 5 1_555 0.047 -0.139 0.063 5.851 -13.456 0.447 2 B_C2:DG5_C B 2 ? C 5 ? 19 1 1 B A 3 1_555 D DT 4 1_555 0.159 -0.085 -0.297 -5.941 -11.322 2.749 3 B_A3:DT4_C B 3 ? C 4 ? 20 1 1 B U 4 1_555 D DA 3 1_555 0.056 -0.140 -0.272 -2.251 -11.125 3.864 4 B_U4:DA3_C B 4 ? C 3 ? 20 1 1 C C 1 1_555 D DG 2 1_555 0.173 -0.156 0.017 -6.888 -9.597 2.341 5 b_C5:DG2_C b 5 ? C 2 ? 19 1 1 C G 2 1_555 D DC 1 1_555 -0.222 -0.149 0.021 -7.929 -12.146 -0.468 6 b_G6:DC1_C b 6 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B A 1 1_555 D DT 6 1_555 B C 2 1_555 D DG 5 1_555 0.738 -0.850 3.227 -4.564 1.502 34.685 -1.631 -1.892 3.069 2.505 7.610 35.006 1 BB_A1C2:DG5DT6_CC B 1 ? C 6 ? B 2 ? C 5 ? 1 B C 2 1_555 D DG 5 1_555 B A 3 1_555 D DT 4 1_555 -0.300 -1.444 3.528 2.036 9.777 28.953 -4.685 0.975 2.872 18.860 -3.928 30.592 2 BB_C2A3:DT4DG5_CC B 2 ? C 5 ? B 3 ? C 4 ? 1 B A 3 1_555 D DT 4 1_555 B U 4 1_555 D DA 3 1_555 1.125 -2.242 3.256 4.364 4.592 24.202 -6.493 -1.349 2.941 10.719 -10.188 25.006 3 BB_A3U4:DA3DT4_CC B 3 ? C 4 ? B 4 ? C 3 ? 1 B U 4 1_555 D DA 3 1_555 C C 1 1_555 D DG 2 1_555 -0.115 -1.788 3.439 1.188 5.525 32.441 -4.103 0.406 3.095 9.796 -2.106 32.916 4 Bb_U4C5:DG2DA3_CC B 4 ? C 3 ? b 5 ? C 2 ? 1 C C 1 1_555 D DG 2 1_555 C G 2 1_555 D DC 1 1_555 0.905 -1.950 3.340 5.370 8.046 21.555 -7.324 -0.507 2.600 20.251 -13.515 23.602 5 bb_C5G6:DC1DG2_CC b 5 ? C 2 ? b 6 ? C 1 ? # _pdbx_deposit_group.group_id G_1001001 _pdbx_deposit_group.group_description ;The structures represent different time points in the divalent and monovalent metal-dependent hydrolysis reaction of RNA by Ribonuclease H1, which is bound to an RNA/DNA hybrid in the crystal. ; _pdbx_deposit_group.group_title 'Cleavage of RNA by B. Halodurans Ribonuclease H1' _pdbx_deposit_group.group_type undefined # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 MN ? ? MN ? ? 'SUBJECT OF INVESTIGATION' ? 2 K ? ? K ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'MANGANESE (II) ION' MN 6 'IODIDE ION' IOD 7 GLYCEROL GOL 8 1,2-ETHANEDIOL EDO 9 'TRIETHYLENE GLYCOL' PGE 10 'POTASSIUM ION' K 11 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ZBL _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #