data_6DPM # _entry.id 6DPM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DPM pdb_00006dpm 10.2210/pdb6dpm/pdb WWPDB D_1000235039 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DPM _pdbx_database_status.recvd_initial_deposition_date 2018-06-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Samara, N.L.' 1 ? 'Yang, W.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Struct. Mol. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first 715 _citation.page_last 721 _citation.title 'Cation trafficking propels RNA hydrolysis.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41594-018-0099-4 _citation.pdbx_database_id_PubMed 30076410 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Samara, N.L.' 1 ? primary 'Yang, W.' 2 0000-0002-3591-2195 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 97.69 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6DPM _cell.details ? _cell.formula_units_Z ? _cell.length_a 81.843 _cell.length_a_esd ? _cell.length_b 37.454 _cell.length_b_esd ? _cell.length_c 62.728 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribonuclease H' 16272.360 1 3.1.26.4 K196A 'Catalytic Domain' ? 2 polymer syn ;5'-R(*AP*CP*AP*U)-3' portion of cleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3' ; 1224.802 1 ? ? ? ? 3 polymer syn ;5'-R(P*CP*G)-3' portion of cleaved RNA (5'-R(*AP*CP*AP*UP*CP*G)-3') ; 605.430 1 ? ? ? ? 4 polymer syn ;DNA (5'-D(*CP*GP*AP*TP*GP*T)-3') ; 1824.228 1 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 6 non-polymer syn 'RUBIDIUM ION' 85.468 6 ? ? ? ? 7 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 8 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 9 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 10 water nat water 18.015 181 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNase H' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQ TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRA ; ;GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQ TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRA ; A ? 2 polyribonucleotide no no ACAU ACAU B ? 3 polyribonucleotide no no CG CG b ? 4 polydeoxyribonucleotide no no '(DC)(DG)(DA)(DT)(DG)(DT)' CGATGT C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 LYS n 1 7 GLU n 1 8 GLU n 1 9 ILE n 1 10 ILE n 1 11 TRP n 1 12 GLU n 1 13 SER n 1 14 LEU n 1 15 SER n 1 16 VAL n 1 17 ASP n 1 18 VAL n 1 19 GLY n 1 20 SER n 1 21 GLN n 1 22 GLY n 1 23 ASN n 1 24 PRO n 1 25 GLY n 1 26 ILE n 1 27 VAL n 1 28 GLU n 1 29 TYR n 1 30 LYS n 1 31 GLY n 1 32 VAL n 1 33 ASP n 1 34 THR n 1 35 LYS n 1 36 THR n 1 37 GLY n 1 38 GLU n 1 39 VAL n 1 40 LEU n 1 41 PHE n 1 42 GLU n 1 43 ARG n 1 44 GLU n 1 45 PRO n 1 46 ILE n 1 47 PRO n 1 48 ILE n 1 49 GLY n 1 50 THR n 1 51 ASN n 1 52 ASN n 1 53 MET n 1 54 GLY n 1 55 GLU n 1 56 PHE n 1 57 LEU n 1 58 ALA n 1 59 ILE n 1 60 VAL n 1 61 HIS n 1 62 GLY n 1 63 LEU n 1 64 ARG n 1 65 TYR n 1 66 LEU n 1 67 LYS n 1 68 GLU n 1 69 ARG n 1 70 ASN n 1 71 SER n 1 72 ARG n 1 73 LYS n 1 74 PRO n 1 75 ILE n 1 76 TYR n 1 77 SER n 1 78 ASP n 1 79 SER n 1 80 GLN n 1 81 THR n 1 82 ALA n 1 83 ILE n 1 84 LYS n 1 85 TRP n 1 86 VAL n 1 87 LYS n 1 88 ASP n 1 89 LYS n 1 90 LYS n 1 91 ALA n 1 92 LYS n 1 93 SER n 1 94 THR n 1 95 LEU n 1 96 VAL n 1 97 ARG n 1 98 ASN n 1 99 GLU n 1 100 GLU n 1 101 THR n 1 102 ALA n 1 103 LEU n 1 104 ILE n 1 105 TRP n 1 106 LYS n 1 107 LEU n 1 108 VAL n 1 109 ASP n 1 110 GLU n 1 111 ALA n 1 112 GLU n 1 113 GLU n 1 114 TRP n 1 115 LEU n 1 116 ASN n 1 117 THR n 1 118 HIS n 1 119 THR n 1 120 TYR n 1 121 GLU n 1 122 THR n 1 123 PRO n 1 124 ILE n 1 125 LEU n 1 126 LYS n 1 127 TRP n 1 128 GLN n 1 129 THR n 1 130 ASP n 1 131 LYS n 1 132 TRP n 1 133 GLY n 1 134 GLU n 1 135 ILE n 1 136 LYS n 1 137 ALA n 1 138 ASP n 1 139 TYR n 1 140 GLY n 1 141 ARG n 1 142 ALA n 2 1 A n 2 2 C n 2 3 A n 2 4 U n 3 1 C n 3 2 G n 4 1 DC n 4 2 DG n 4 3 DA n 4 4 DT n 4 5 DG n 4 6 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 142 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rnhA, BH0863' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus halodurans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 86665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 4 'synthetic construct' ? 32630 ? 3 1 sample 1 2 'synthetic construct' ? 32630 ? 4 1 sample 1 6 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP RNH1_BACHD Q9KEI9 ? 1 ;AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIK WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; 59 2 PDB 6DPM 6DPM ? 2 ? 1 3 PDB 6DPM 6DPM ? 3 ? 1 4 PDB 6DPM 6DPM ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6DPM A 5 ? 142 ? Q9KEI9 59 ? 196 ? 59 196 2 2 6DPM B 1 ? 4 ? 6DPM 1 ? 4 ? 1 4 3 3 6DPM b 1 ? 2 ? 6DPM 5 ? 6 ? 5 6 4 4 6DPM C 1 ? 6 ? 6DPM 1 ? 6 ? 1 6 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6DPM GLY A 1 ? UNP Q9KEI9 ? ? 'expression tag' 55 1 1 6DPM SER A 2 ? UNP Q9KEI9 ? ? 'expression tag' 56 2 1 6DPM HIS A 3 ? UNP Q9KEI9 ? ? 'expression tag' 57 3 1 6DPM MET A 4 ? UNP Q9KEI9 ? ? 'expression tag' 58 4 1 6DPM ALA A 142 ? UNP Q9KEI9 LYS 196 'engineered mutation' 196 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RB non-polymer . 'RUBIDIUM ION' ? 'Rb 1' 85.468 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DPM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.02 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity 0.000 _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '14% PEG3350, 20% glycerol, 200 mM KI, and 25 mM CaCl2' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-06-24 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6DPM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.680 _reflns.d_resolution_low 20.090 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21641 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 1.900 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.000 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.068 _reflns.pdbx_Rpim_I_all 0.048 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 41867 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.680 1.710 ? ? ? ? ? ? 909 80.200 ? ? ? ? 0.732 ? ? ? ? ? ? ? ? 1.900 ? ? ? ? 1.035 0.732 ? 1 1 0.467 ? 9.030 20.090 ? ? ? ? ? ? 140 90.900 ? ? ? ? 0.019 ? ? ? ? ? ? ? ? 1.700 ? ? ? ? 0.027 0.019 ? 2 1 0.998 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DPM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.677 _refine.ls_d_res_low 20.086 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21639 _refine.ls_number_reflns_R_free 1070 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.95 _refine.ls_percent_reflns_R_free 4.94 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1616 _refine.ls_R_factor_R_free 0.1990 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1597 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'pdbid 1ZBL' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.60 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.23 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1114 _refine_hist.pdbx_number_atoms_nucleic_acid 244 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 181 _refine_hist.number_atoms_total 1582 _refine_hist.d_res_high 1.677 _refine_hist.d_res_low 20.086 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 1464 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.988 ? 2023 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 19.629 ? 829 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.057 ? 221 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 212 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6772 1.7535 . . 135 2336 91.00 . . . 0.3639 . 0.2984 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7535 1.8459 . . 130 2594 100.00 . . . 0.2865 . 0.2418 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8459 1.9614 . . 135 2596 100.00 . . . 0.2633 . 0.2080 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9614 2.1127 . . 147 2547 100.00 . . . 0.2297 . 0.1783 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1127 2.3250 . . 131 2597 100.00 . . . 0.2185 . 0.1493 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3250 2.6608 . . 140 2584 100.00 . . . 0.1674 . 0.1450 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6608 3.3498 . . 119 2626 100.00 . . . 0.1743 . 0.1528 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3498 20.0876 . . 133 2689 100.00 . . . 0.1672 . 0.1324 . . . . . . . . . . # _struct.entry_id 6DPM _struct.title ;Crystal Structure of Bacillus Halodurans Ribonuclease H1 K196A in Complex with an RNA/DNA Hybrid: Reaction in 10 mM Mg2+ and 200 mM Rb+ for 1800 s at 21 C ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DPM _struct_keywords.text ;protein-RNA-DNA complex, double helix, RNA hydrolysis, in crystallo catalysis, metal dependent catalysis, monovalent cations, divalent cations, HYDROLASE-RNA-DNA complex ; _struct_keywords.pdbx_keywords HYDROLASE/RNA/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? J N N 6 ? K N N 7 ? L N N 7 ? M N N 7 ? N N N 8 ? O N N 8 ? P N N 8 ? Q N N 9 ? R N N 9 ? S N N 9 ? T N N 6 ? U N N 6 ? V N N 8 ? W N N 9 ? X N N 10 ? Y N N 10 ? Z N N 10 ? AA N N 10 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 50 ? ARG A 69 ? THR A 104 ARG A 123 1 ? 20 HELX_P HELX_P2 AA2 SER A 79 ? LYS A 89 ? SER A 133 LYS A 143 1 ? 11 HELX_P HELX_P3 AA3 ASN A 98 ? GLU A 100 ? ASN A 152 GLU A 154 5 ? 3 HELX_P HELX_P4 AA4 THR A 101 ? HIS A 118 ? THR A 155 HIS A 172 1 ? 18 HELX_P HELX_P5 AA5 GLN A 128 ? GLY A 133 ? GLN A 182 GLY A 187 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 17 OD2 ? ? ? 1_555 E MG . MG ? ? A ASP 71 A MG 201 1_555 ? ? ? ? ? ? ? 2.051 ? ? metalc2 metalc ? ? A ASP 17 OD1 ? ? ? 1_555 F MG . MG ? ? A ASP 71 A MG 202 1_555 ? ? ? ? ? ? ? 2.015 ? ? metalc3 metalc ? ? A GLU 55 OE1 ? ? ? 1_555 F MG . MG ? ? A GLU 109 A MG 202 1_555 ? ? ? ? ? ? ? 2.035 ? ? metalc4 metalc ? ? A LYS 67 O ? ? ? 1_555 J RB . RB ? ? A LYS 121 A RB 206 1_555 ? ? ? ? ? ? ? 2.841 ? ? metalc5 metalc ? ? A ASN 70 OD1 ? ? ? 1_555 J RB . RB ? ? A ASN 124 A RB 206 1_555 ? ? ? ? ? ? ? 2.874 ? ? metalc6 metalc ? ? A ASP 78 OD1 ? ? ? 1_555 F MG . MG ? ? A ASP 132 A MG 202 1_555 ? ? ? ? ? ? ? 2.007 ? ? metalc7 metalc ? ? A ASP 78 OD2 ? ? ? 1_555 H RB . RB ? ? A ASP 132 A RB 204 1_555 ? ? ? ? ? ? ? 3.167 ? ? metalc8 metalc ? ? A GLU 134 OE1 ? ? ? 1_555 H RB . RB ? ? A GLU 188 A RB 204 1_555 ? ? ? ? ? ? ? 3.023 ? ? metalc9 metalc ? ? A ASP 138 OD1 ? ? ? 1_555 E MG . MG ? ? A ASP 192 A MG 201 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc10 metalc ? ? A ASP 138 OD1 ? ? ? 1_555 G RB . RB A ? A ASP 192 A RB 203 1_555 ? ? ? ? ? ? ? 2.928 ? ? metalc11 metalc ? ? A ASP 138 OD2 ? ? ? 1_555 I RB . RB C ? A ASP 192 A RB 205 1_555 ? ? ? ? ? ? ? 2.688 ? ? metalc12 metalc ? ? A ARG 141 N ? ? ? 1_555 G RB . RB A ? A ARG 195 A RB 203 1_555 ? ? ? ? ? ? ? 2.854 ? ? metalc13 metalc ? ? A ALA 142 N ? ? ? 1_555 G RB . RB A ? A ALA 196 A RB 203 1_555 ? ? ? ? ? ? ? 3.028 ? ? metalc14 metalc ? ? E MG . MG ? ? ? 1_555 X HOH . O ? ? A MG 201 A HOH 314 1_555 ? ? ? ? ? ? ? 2.078 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 1_555 X HOH . O ? ? A MG 201 A HOH 318 1_555 ? ? ? ? ? ? ? 2.119 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 C C 1 OP1 ? ? A MG 201 b C 5 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 1_555 Z HOH . O ? ? A MG 201 b HOH 105 1_555 ? ? ? ? ? ? ? 2.189 ? ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 C C 1 OP3 C ? A MG 202 b C 5 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc19 metalc ? ? F MG . MG ? ? ? 1_555 C C 1 OP1 ? ? A MG 202 b C 5 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc20 metalc ? ? G RB . RB A ? ? 1_555 C G 2 OP2 ? ? A RB 203 b G 6 1_555 ? ? ? ? ? ? ? 2.795 ? ? metalc21 metalc ? ? G RB . RB A ? ? 1_555 Z HOH . O ? ? A RB 203 b HOH 105 1_555 ? ? ? ? ? ? ? 3.000 ? ? metalc22 metalc ? ? H RB . RB ? ? ? 1_555 X HOH . O ? ? A RB 204 A HOH 335 1_555 ? ? ? ? ? ? ? 2.906 ? ? metalc23 metalc ? ? H RB . RB ? ? ? 1_555 B U 4 OP1 ? ? A RB 204 B U 4 1_555 ? ? ? ? ? ? ? 2.973 ? ? metalc24 metalc ? ? H RB . RB ? ? ? 1_555 C C 1 OP2 ? ? A RB 204 b C 5 1_555 ? ? ? ? ? ? ? 2.834 ? ? metalc25 metalc ? ? H RB . RB ? ? ? 1_555 Z HOH . O ? ? A RB 204 b HOH 102 1_555 ? ? ? ? ? ? ? 2.953 ? ? metalc26 metalc ? ? I RB . RB C ? ? 1_555 X HOH . O ? ? A RB 205 A HOH 371 1_555 ? ? ? ? ? ? ? 2.717 ? ? metalc27 metalc ? ? I RB . RB C ? ? 1_555 Z HOH . O ? ? A RB 205 b HOH 105 1_555 ? ? ? ? ? ? ? 3.199 ? ? metalc28 metalc ? ? J RB . RB ? ? ? 1_555 X HOH . O ? ? A RB 206 A HOH 410 1_555 ? ? ? ? ? ? ? 2.578 ? ? metalc29 metalc ? ? J RB . RB ? ? ? 1_555 X HOH . O ? ? A RB 206 A HOH 430 1_555 ? ? ? ? ? ? ? 2.551 ? ? metalc30 metalc ? ? B U 4 "O2'" ? ? ? 1_555 T RB . RB ? ? B U 4 B RB 101 1_555 ? ? ? ? ? ? ? 3.018 ? ? metalc31 metalc ? ? B U 4 O2 ? ? ? 1_555 T RB . RB ? ? B U 4 B RB 101 1_555 ? ? ? ? ? ? ? 2.901 ? ? metalc32 metalc ? ? T RB . RB ? ? ? 1_555 Y HOH . O ? ? B RB 101 B HOH 214 1_555 ? ? ? ? ? ? ? 2.771 ? ? metalc33 metalc ? ? T RB . RB ? ? ? 1_555 AA HOH . O ? ? B RB 101 C HOH 205 1_555 ? ? ? ? ? ? ? 2.948 ? ? metalc34 metalc ? ? Y HOH . O ? ? ? 1_555 U RB . RB ? ? B HOH 215 C RB 101 1_555 ? ? ? ? ? ? ? 3.193 ? ? metalc35 metalc ? ? D DG 5 O6 ? ? ? 1_555 U RB . RB ? ? C DG 5 C RB 101 1_555 ? ? ? ? ? ? ? 2.683 ? ? metalc36 metalc ? ? U RB . RB ? ? ? 1_555 AA HOH . O B ? C RB 101 C HOH 207 1_555 ? ? ? ? ? ? ? 2.464 ? ? hydrog1 hydrog ? ? B A 1 N1 ? ? ? 1_555 D DT 6 N3 ? ? B A 1 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B A 1 N6 ? ? ? 1_555 D DT 6 O4 ? ? B A 1 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B C 2 N3 ? ? ? 1_555 D DG 5 N1 ? ? B C 2 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B C 2 N4 ? ? ? 1_555 D DG 5 O6 ? ? B C 2 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B C 2 O2 ? ? ? 1_555 D DG 5 N2 ? ? B C 2 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B A 3 N1 ? ? ? 1_555 D DT 4 N3 ? ? B A 3 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B A 3 N6 ? ? ? 1_555 D DT 4 O4 ? ? B A 3 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B U 4 N3 ? ? ? 1_555 D DA 3 N1 ? ? B U 4 C DA 3 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog9 hydrog ? ? B U 4 O2 ? ? ? 1_555 D DA 3 N6 ? ? B U 4 C DA 3 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog10 hydrog ? ? C C 1 N3 ? ? ? 1_555 D DG 2 N1 ? ? b C 5 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C C 1 N4 ? ? ? 1_555 D DG 2 O6 ? ? b C 5 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C C 1 O2 ? ? ? 1_555 D DG 2 N2 ? ? b C 5 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C G 2 N1 ? ? ? 1_555 D DC 1 N3 ? ? b G 6 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C G 2 N2 ? ? ? 1_555 D DC 1 O2 ? ? b G 6 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C G 2 O6 ? ? ? 1_555 D DC 1 N4 ? ? b G 6 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 23 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 77 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 24 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 78 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.82 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 39 ? GLY A 49 ? VAL A 93 GLY A 103 AA1 2 GLY A 25 ? ASP A 33 ? GLY A 79 ASP A 87 AA1 3 LEU A 14 ? GLN A 21 ? LEU A 68 GLN A 75 AA1 4 ILE A 75 ? SER A 77 ? ILE A 129 SER A 131 AA1 5 ILE A 124 ? LYS A 126 ? ILE A 178 LYS A 180 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 46 ? O ILE A 100 N VAL A 27 ? N VAL A 81 AA1 2 3 O VAL A 32 ? O VAL A 86 N SER A 15 ? N SER A 69 AA1 3 4 N LEU A 14 ? N LEU A 68 O TYR A 76 ? O TYR A 130 AA1 4 5 N ILE A 75 ? N ILE A 129 O LEU A 125 ? O LEU A 179 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 201 ? 6 'binding site for residue MG A 201' AC2 Software A MG 202 ? 4 'binding site for residue MG A 202' AC3 Software A RB 203 ? 7 'binding site for residue RB A 203' AC4 Software A RB 204 ? 6 'binding site for residue RB A 204' AC5 Software A RB 205 ? 4 'binding site for residue RB A 205' AC6 Software A RB 206 ? 4 'binding site for residue RB A 206' AC7 Software A CL 207 ? 3 'binding site for residue CL A 207' AC8 Software A CL 208 ? 3 'binding site for residue CL A 208' AC9 Software A CL 209 ? 4 'binding site for residue CL A 209' AD1 Software A GOL 210 ? 8 'binding site for residue GOL A 210' AD2 Software A GOL 211 ? 5 'binding site for residue GOL A 211' AD3 Software A GOL 212 ? 8 'binding site for residue GOL A 212' AD4 Software A EDO 213 ? 3 'binding site for residue EDO A 213' AD5 Software A EDO 214 ? 6 'binding site for residue EDO A 214' AD6 Software A EDO 215 ? 4 'binding site for residue EDO A 215' AD7 Software B RB 101 ? 3 'binding site for residue RB B 101' AD8 Software C RB 101 ? 3 'binding site for residue RB C 101' AD9 Software C GOL 102 ? 5 'binding site for residue GOL C 102' AE1 Software C EDO 103 ? 3 'binding site for residue EDO C 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 17 ? ASP A 71 . ? 1_555 ? 2 AC1 6 ASP A 138 ? ASP A 192 . ? 1_555 ? 3 AC1 6 HOH X . ? HOH A 314 . ? 1_555 ? 4 AC1 6 HOH X . ? HOH A 318 . ? 1_555 ? 5 AC1 6 C C 1 ? C b 5 . ? 1_555 ? 6 AC1 6 HOH Z . ? HOH b 105 . ? 1_555 ? 7 AC2 4 ASP A 17 ? ASP A 71 . ? 1_555 ? 8 AC2 4 GLU A 55 ? GLU A 109 . ? 1_555 ? 9 AC2 4 ASP A 78 ? ASP A 132 . ? 1_555 ? 10 AC2 4 C C 1 ? C b 5 . ? 1_555 ? 11 AC3 7 ASP A 138 ? ASP A 192 . ? 1_555 ? 12 AC3 7 TYR A 139 ? TYR A 193 . ? 1_555 ? 13 AC3 7 ARG A 141 ? ARG A 195 . ? 1_555 ? 14 AC3 7 ALA A 142 ? ALA A 196 . ? 1_555 ? 15 AC3 7 RB I . ? RB A 205 . ? 1_555 ? 16 AC3 7 G C 2 ? G b 6 . ? 1_555 ? 17 AC3 7 HOH Z . ? HOH b 105 . ? 1_555 ? 18 AC4 6 ASP A 78 ? ASP A 132 . ? 1_555 ? 19 AC4 6 GLU A 134 ? GLU A 188 . ? 1_555 ? 20 AC4 6 HOH X . ? HOH A 335 . ? 1_555 ? 21 AC4 6 U B 4 ? U B 4 . ? 1_555 ? 22 AC4 6 C C 1 ? C b 5 . ? 1_555 ? 23 AC4 6 HOH Z . ? HOH b 102 . ? 1_555 ? 24 AC5 4 ASP A 138 ? ASP A 192 . ? 1_555 ? 25 AC5 4 ALA A 142 ? ALA A 196 . ? 1_555 ? 26 AC5 4 RB G . ? RB A 203 . ? 1_555 ? 27 AC5 4 HOH X . ? HOH A 371 . ? 1_555 ? 28 AC6 4 LYS A 67 ? LYS A 121 . ? 1_555 ? 29 AC6 4 ASN A 70 ? ASN A 124 . ? 1_555 ? 30 AC6 4 HOH X . ? HOH A 410 . ? 1_555 ? 31 AC6 4 HOH X . ? HOH A 430 . ? 1_555 ? 32 AC7 3 TYR A 29 ? TYR A 83 . ? 1_555 ? 33 AC7 3 GOL P . ? GOL A 212 . ? 1_555 ? 34 AC7 3 HOH X . ? HOH A 360 . ? 1_555 ? 35 AC8 3 HOH X . ? HOH A 348 . ? 1_555 ? 36 AC8 3 HOH X . ? HOH A 431 . ? 1_555 ? 37 AC8 3 HOH X . ? HOH A 438 . ? 1_555 ? 38 AC9 4 PRO A 123 ? PRO A 177 . ? 1_555 ? 39 AC9 4 EDO R . ? EDO A 214 . ? 2_656 ? 40 AC9 4 HOH X . ? HOH A 416 . ? 2_656 ? 41 AC9 4 HOH X . ? HOH A 424 . ? 2_656 ? 42 AD1 8 HIS A 61 ? HIS A 115 . ? 1_555 ? 43 AD1 8 TYR A 65 ? TYR A 119 . ? 1_555 ? 44 AD1 8 ARG A 69 ? ARG A 123 . ? 1_555 ? 45 AD1 8 GLU A 113 ? GLU A 167 . ? 4_546 ? 46 AD1 8 ASN A 116 ? ASN A 170 . ? 4_546 ? 47 AD1 8 GOL P . ? GOL A 212 . ? 1_555 ? 48 AD1 8 HOH X . ? HOH A 388 . ? 1_555 ? 49 AD1 8 HOH X . ? HOH A 404 . ? 4_546 ? 50 AD2 5 GLU A 12 ? GLU A 66 . ? 2_656 ? 51 AD2 5 SER A 71 ? SER A 125 . ? 1_555 ? 52 AD2 5 LYS A 73 ? LYS A 127 . ? 1_555 ? 53 AD2 5 HOH X . ? HOH A 311 . ? 1_555 ? 54 AD2 5 HOH X . ? HOH A 313 . ? 1_555 ? 55 AD3 8 HIS A 61 ? HIS A 115 . ? 1_555 ? 56 AD3 8 ARG A 64 ? ARG A 118 . ? 1_555 ? 57 AD3 8 ASN A 116 ? ASN A 170 . ? 4_546 ? 58 AD3 8 CL K . ? CL A 207 . ? 1_555 ? 59 AD3 8 GOL N . ? GOL A 210 . ? 1_555 ? 60 AD3 8 HOH X . ? HOH A 324 . ? 1_555 ? 61 AD3 8 HOH X . ? HOH A 360 . ? 1_555 ? 62 AD3 8 HOH X . ? HOH A 401 . ? 1_555 ? 63 AD4 3 LYS A 89 ? LYS A 143 . ? 1_555 ? 64 AD4 3 THR A 119 ? THR A 173 . ? 1_555 ? 65 AD4 3 TYR A 120 ? TYR A 174 . ? 1_555 ? 66 AD5 6 ARG A 72 ? ARG A 126 . ? 1_555 ? 67 AD5 6 GLU A 121 ? GLU A 175 . ? 1_555 ? 68 AD5 6 PRO A 123 ? PRO A 177 . ? 2_656 ? 69 AD5 6 CL M . ? CL A 209 . ? 2_656 ? 70 AD5 6 HOH X . ? HOH A 304 . ? 1_555 ? 71 AD5 6 HOH X . ? HOH A 420 . ? 1_555 ? 72 AD6 4 ARG A 43 ? ARG A 97 . ? 1_555 ? 73 AD6 4 LYS A 89 ? LYS A 143 . ? 4_546 ? 74 AD6 4 HIS A 118 ? HIS A 172 . ? 4_546 ? 75 AD6 4 THR A 119 ? THR A 173 . ? 4_546 ? 76 AD7 3 U B 4 ? U B 4 . ? 1_555 ? 77 AD7 3 HOH Y . ? HOH B 214 . ? 1_555 ? 78 AD7 3 HOH AA . ? HOH C 205 . ? 1_555 ? 79 AD8 3 DT D 4 ? DT C 4 . ? 1_555 ? 80 AD8 3 DG D 5 ? DG C 5 . ? 1_555 ? 81 AD8 3 HOH AA . ? HOH C 207 . ? 1_555 ? 82 AD9 5 GLY A 22 ? GLY A 76 . ? 1_555 ? 83 AD9 5 ASN A 23 ? ASN A 77 . ? 1_555 ? 84 AD9 5 PRO A 24 ? PRO A 78 . ? 1_555 ? 85 AD9 5 DG D 2 ? DG C 2 . ? 1_555 ? 86 AD9 5 DA D 3 ? DA C 3 . ? 1_555 ? 87 AE1 3 THR A 94 ? THR A 148 . ? 1_555 ? 88 AE1 3 DT D 4 ? DT C 4 . ? 1_555 ? 89 AE1 3 DG D 5 ? DG C 5 . ? 1_555 ? # _atom_sites.entry_id 6DPM _atom_sites.fract_transf_matrix[1][1] 0.012219 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001651 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026699 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016087 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL H MG N O P RB S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 55 ? ? ? A . n A 1 2 SER 2 56 ? ? ? A . n A 1 3 HIS 3 57 ? ? ? A . n A 1 4 MET 4 58 ? ? ? A . n A 1 5 ALA 5 59 ? ? ? A . n A 1 6 LYS 6 60 ? ? ? A . n A 1 7 GLU 7 61 61 GLU GLU A . n A 1 8 GLU 8 62 62 GLU GLU A . n A 1 9 ILE 9 63 63 ILE ILE A . n A 1 10 ILE 10 64 64 ILE ILE A . n A 1 11 TRP 11 65 65 TRP TRP A . n A 1 12 GLU 12 66 66 GLU GLU A . n A 1 13 SER 13 67 67 SER SER A . n A 1 14 LEU 14 68 68 LEU LEU A . n A 1 15 SER 15 69 69 SER SER A . n A 1 16 VAL 16 70 70 VAL VAL A . n A 1 17 ASP 17 71 71 ASP ASP A . n A 1 18 VAL 18 72 72 VAL VAL A . n A 1 19 GLY 19 73 73 GLY GLY A . n A 1 20 SER 20 74 74 SER SER A . n A 1 21 GLN 21 75 75 GLN GLN A . n A 1 22 GLY 22 76 76 GLY GLY A . n A 1 23 ASN 23 77 77 ASN ASN A . n A 1 24 PRO 24 78 78 PRO PRO A . n A 1 25 GLY 25 79 79 GLY GLY A . n A 1 26 ILE 26 80 80 ILE ILE A . n A 1 27 VAL 27 81 81 VAL VAL A . n A 1 28 GLU 28 82 82 GLU GLU A . n A 1 29 TYR 29 83 83 TYR TYR A . n A 1 30 LYS 30 84 84 LYS LYS A . n A 1 31 GLY 31 85 85 GLY GLY A . n A 1 32 VAL 32 86 86 VAL VAL A . n A 1 33 ASP 33 87 87 ASP ASP A . n A 1 34 THR 34 88 88 THR THR A . n A 1 35 LYS 35 89 89 LYS LYS A . n A 1 36 THR 36 90 90 THR THR A . n A 1 37 GLY 37 91 91 GLY GLY A . n A 1 38 GLU 38 92 92 GLU GLU A . n A 1 39 VAL 39 93 93 VAL VAL A . n A 1 40 LEU 40 94 94 LEU LEU A . n A 1 41 PHE 41 95 95 PHE PHE A . n A 1 42 GLU 42 96 96 GLU GLU A . n A 1 43 ARG 43 97 97 ARG ARG A . n A 1 44 GLU 44 98 98 GLU GLU A . n A 1 45 PRO 45 99 99 PRO PRO A . n A 1 46 ILE 46 100 100 ILE ILE A . n A 1 47 PRO 47 101 101 PRO PRO A . n A 1 48 ILE 48 102 102 ILE ILE A . n A 1 49 GLY 49 103 103 GLY GLY A . n A 1 50 THR 50 104 104 THR THR A . n A 1 51 ASN 51 105 105 ASN ASN A . n A 1 52 ASN 52 106 106 ASN ASN A . n A 1 53 MET 53 107 107 MET MET A . n A 1 54 GLY 54 108 108 GLY GLY A . n A 1 55 GLU 55 109 109 GLU GLU A . n A 1 56 PHE 56 110 110 PHE PHE A . n A 1 57 LEU 57 111 111 LEU LEU A . n A 1 58 ALA 58 112 112 ALA ALA A . n A 1 59 ILE 59 113 113 ILE ILE A . n A 1 60 VAL 60 114 114 VAL VAL A . n A 1 61 HIS 61 115 115 HIS HIS A . n A 1 62 GLY 62 116 116 GLY GLY A . n A 1 63 LEU 63 117 117 LEU LEU A . n A 1 64 ARG 64 118 118 ARG ARG A . n A 1 65 TYR 65 119 119 TYR TYR A . n A 1 66 LEU 66 120 120 LEU LEU A . n A 1 67 LYS 67 121 121 LYS LYS A . n A 1 68 GLU 68 122 122 GLU GLU A . n A 1 69 ARG 69 123 123 ARG ARG A . n A 1 70 ASN 70 124 124 ASN ASN A . n A 1 71 SER 71 125 125 SER SER A . n A 1 72 ARG 72 126 126 ARG ARG A . n A 1 73 LYS 73 127 127 LYS LYS A . n A 1 74 PRO 74 128 128 PRO PRO A . n A 1 75 ILE 75 129 129 ILE ILE A . n A 1 76 TYR 76 130 130 TYR TYR A . n A 1 77 SER 77 131 131 SER SER A . n A 1 78 ASP 78 132 132 ASP ASP A . n A 1 79 SER 79 133 133 SER SER A . n A 1 80 GLN 80 134 134 GLN GLN A . n A 1 81 THR 81 135 135 THR THR A . n A 1 82 ALA 82 136 136 ALA ALA A . n A 1 83 ILE 83 137 137 ILE ILE A . n A 1 84 LYS 84 138 138 LYS LYS A . n A 1 85 TRP 85 139 139 TRP TRP A . n A 1 86 VAL 86 140 140 VAL VAL A . n A 1 87 LYS 87 141 141 LYS LYS A . n A 1 88 ASP 88 142 142 ASP ASP A . n A 1 89 LYS 89 143 143 LYS LYS A . n A 1 90 LYS 90 144 144 LYS LYS A . n A 1 91 ALA 91 145 145 ALA ALA A . n A 1 92 LYS 92 146 146 LYS LYS A . n A 1 93 SER 93 147 147 SER SER A . n A 1 94 THR 94 148 148 THR THR A . n A 1 95 LEU 95 149 149 LEU LEU A . n A 1 96 VAL 96 150 150 VAL VAL A . n A 1 97 ARG 97 151 151 ARG ARG A . n A 1 98 ASN 98 152 152 ASN ASN A . n A 1 99 GLU 99 153 153 GLU GLU A . n A 1 100 GLU 100 154 154 GLU GLU A . n A 1 101 THR 101 155 155 THR THR A . n A 1 102 ALA 102 156 156 ALA ALA A . n A 1 103 LEU 103 157 157 LEU LEU A . n A 1 104 ILE 104 158 158 ILE ILE A . n A 1 105 TRP 105 159 159 TRP TRP A . n A 1 106 LYS 106 160 160 LYS LYS A . n A 1 107 LEU 107 161 161 LEU LEU A . n A 1 108 VAL 108 162 162 VAL VAL A . n A 1 109 ASP 109 163 163 ASP ASP A . n A 1 110 GLU 110 164 164 GLU GLU A . n A 1 111 ALA 111 165 165 ALA ALA A . n A 1 112 GLU 112 166 166 GLU GLU A . n A 1 113 GLU 113 167 167 GLU GLU A . n A 1 114 TRP 114 168 168 TRP TRP A . n A 1 115 LEU 115 169 169 LEU LEU A . n A 1 116 ASN 116 170 170 ASN ASN A . n A 1 117 THR 117 171 171 THR THR A . n A 1 118 HIS 118 172 172 HIS HIS A . n A 1 119 THR 119 173 173 THR THR A . n A 1 120 TYR 120 174 174 TYR TYR A . n A 1 121 GLU 121 175 175 GLU GLU A . n A 1 122 THR 122 176 176 THR THR A . n A 1 123 PRO 123 177 177 PRO PRO A . n A 1 124 ILE 124 178 178 ILE ILE A . n A 1 125 LEU 125 179 179 LEU LEU A . n A 1 126 LYS 126 180 180 LYS LYS A . n A 1 127 TRP 127 181 181 TRP TRP A . n A 1 128 GLN 128 182 182 GLN GLN A . n A 1 129 THR 129 183 183 THR THR A . n A 1 130 ASP 130 184 184 ASP ASP A . n A 1 131 LYS 131 185 185 LYS LYS A . n A 1 132 TRP 132 186 186 TRP TRP A . n A 1 133 GLY 133 187 187 GLY GLY A . n A 1 134 GLU 134 188 188 GLU GLU A . n A 1 135 ILE 135 189 189 ILE ILE A . n A 1 136 LYS 136 190 190 LYS LYS A . n A 1 137 ALA 137 191 191 ALA ALA A . n A 1 138 ASP 138 192 192 ASP ASP A . n A 1 139 TYR 139 193 193 TYR TYR A . n A 1 140 GLY 140 194 194 GLY GLY A . n A 1 141 ARG 141 195 195 ARG ARG A . n A 1 142 ALA 142 196 196 ALA ALA A . n B 2 1 A 1 1 1 A A B . n B 2 2 C 2 2 2 C C B . n B 2 3 A 3 3 3 A A B . n B 2 4 U 4 4 4 U U B . n C 3 1 C 1 5 5 C C b . n C 3 2 G 2 6 6 G G b . n D 4 1 DC 1 1 1 DC DC C . n D 4 2 DG 2 2 2 DG DG C . n D 4 3 DA 3 3 3 DA DA C . n D 4 4 DT 4 4 4 DT DT C . n D 4 5 DG 5 5 5 DG DG C . n D 4 6 DT 6 6 6 DT DT C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MG 1 201 201 MG MG A . F 5 MG 1 202 202 MG MG A . G 6 RB 1 203 211 RB RB A . H 6 RB 1 204 212 RB RB A . I 6 RB 1 205 213 RB RB A . J 6 RB 1 206 215 RB RB A . K 7 CL 1 207 1 CL CL A . L 7 CL 1 208 2 CL CL A . M 7 CL 1 209 3 CL CL A . N 8 GOL 1 210 2 GOL GOL A . O 8 GOL 1 211 3 GOL GOL A . P 8 GOL 1 212 4 GOL GOL A . Q 9 EDO 1 213 5 EDO EDO A . R 9 EDO 1 214 7 EDO EDO A . S 9 EDO 1 215 8 EDO EDO A . T 6 RB 1 101 216 RB RB B . U 6 RB 1 101 214 RB RB C . V 8 GOL 1 102 1 GOL GOL C . W 9 EDO 1 103 6 EDO EDO C . X 10 HOH 1 301 204 HOH HOH A . X 10 HOH 2 302 193 HOH HOH A . X 10 HOH 3 303 131 HOH HOH A . X 10 HOH 4 304 23 HOH HOH A . X 10 HOH 5 305 160 HOH HOH A . X 10 HOH 6 306 172 HOH HOH A . X 10 HOH 7 307 130 HOH HOH A . X 10 HOH 8 308 157 HOH HOH A . X 10 HOH 9 309 249 HOH HOH A . X 10 HOH 10 310 70 HOH HOH A . X 10 HOH 11 311 154 HOH HOH A . X 10 HOH 12 312 17 HOH HOH A . X 10 HOH 13 313 197 HOH HOH A . X 10 HOH 14 314 64 HOH HOH A . X 10 HOH 15 315 200 HOH HOH A . X 10 HOH 16 316 221 HOH HOH A . X 10 HOH 17 317 35 HOH HOH A . X 10 HOH 18 318 36 HOH HOH A . X 10 HOH 19 319 120 HOH HOH A . X 10 HOH 20 320 60 HOH HOH A . X 10 HOH 21 321 209 HOH HOH A . X 10 HOH 22 322 52 HOH HOH A . X 10 HOH 23 323 194 HOH HOH A . X 10 HOH 24 324 95 HOH HOH A . X 10 HOH 25 325 195 HOH HOH A . X 10 HOH 26 326 213 HOH HOH A . X 10 HOH 27 327 223 HOH HOH A . X 10 HOH 28 328 156 HOH HOH A . X 10 HOH 29 329 138 HOH HOH A . X 10 HOH 30 330 34 HOH HOH A . X 10 HOH 31 331 222 HOH HOH A . X 10 HOH 32 332 45 HOH HOH A . X 10 HOH 33 333 47 HOH HOH A . X 10 HOH 34 334 269 HOH HOH A . X 10 HOH 35 335 252 HOH HOH A . X 10 HOH 36 336 21 HOH HOH A . X 10 HOH 37 337 22 HOH HOH A . X 10 HOH 38 338 14 HOH HOH A . X 10 HOH 39 339 143 HOH HOH A . X 10 HOH 40 340 126 HOH HOH A . X 10 HOH 41 341 2 HOH HOH A . X 10 HOH 42 342 69 HOH HOH A . X 10 HOH 43 343 167 HOH HOH A . X 10 HOH 44 344 162 HOH HOH A . X 10 HOH 45 345 259 HOH HOH A . X 10 HOH 46 346 236 HOH HOH A . X 10 HOH 47 347 208 HOH HOH A . X 10 HOH 48 348 84 HOH HOH A . X 10 HOH 49 349 28 HOH HOH A . X 10 HOH 50 350 169 HOH HOH A . X 10 HOH 51 351 260 HOH HOH A . X 10 HOH 52 352 219 HOH HOH A . X 10 HOH 53 353 187 HOH HOH A . X 10 HOH 54 354 59 HOH HOH A . X 10 HOH 55 355 76 HOH HOH A . X 10 HOH 56 356 13 HOH HOH A . X 10 HOH 57 357 57 HOH HOH A . X 10 HOH 58 358 198 HOH HOH A . X 10 HOH 59 359 214 HOH HOH A . X 10 HOH 60 360 1 HOH HOH A . X 10 HOH 61 361 32 HOH HOH A . X 10 HOH 62 362 161 HOH HOH A . X 10 HOH 63 363 129 HOH HOH A . X 10 HOH 64 364 55 HOH HOH A . X 10 HOH 65 365 135 HOH HOH A . X 10 HOH 66 366 273 HOH HOH A . X 10 HOH 67 367 42 HOH HOH A . X 10 HOH 68 368 44 HOH HOH A . X 10 HOH 69 369 235 HOH HOH A . X 10 HOH 70 370 264 HOH HOH A . X 10 HOH 71 371 251 HOH HOH A . X 10 HOH 72 372 9 HOH HOH A . X 10 HOH 73 373 50 HOH HOH A . X 10 HOH 74 374 81 HOH HOH A . X 10 HOH 75 375 263 HOH HOH A . X 10 HOH 76 376 265 HOH HOH A . X 10 HOH 77 377 171 HOH HOH A . X 10 HOH 78 378 186 HOH HOH A . X 10 HOH 79 379 8 HOH HOH A . X 10 HOH 80 380 267 HOH HOH A . X 10 HOH 81 381 201 HOH HOH A . X 10 HOH 82 382 7 HOH HOH A . X 10 HOH 83 383 202 HOH HOH A . X 10 HOH 84 384 26 HOH HOH A . X 10 HOH 85 385 124 HOH HOH A . X 10 HOH 86 386 270 HOH HOH A . X 10 HOH 87 387 77 HOH HOH A . X 10 HOH 88 388 49 HOH HOH A . X 10 HOH 89 389 86 HOH HOH A . X 10 HOH 90 390 246 HOH HOH A . X 10 HOH 91 391 180 HOH HOH A . X 10 HOH 92 392 276 HOH HOH A . X 10 HOH 93 393 66 HOH HOH A . X 10 HOH 94 394 181 HOH HOH A . X 10 HOH 95 395 258 HOH HOH A . X 10 HOH 96 396 237 HOH HOH A . X 10 HOH 97 397 216 HOH HOH A . X 10 HOH 98 398 238 HOH HOH A . X 10 HOH 99 399 212 HOH HOH A . X 10 HOH 100 400 257 HOH HOH A . X 10 HOH 101 401 139 HOH HOH A . X 10 HOH 102 402 46 HOH HOH A . X 10 HOH 103 403 182 HOH HOH A . X 10 HOH 104 404 106 HOH HOH A . X 10 HOH 105 405 112 HOH HOH A . X 10 HOH 106 406 206 HOH HOH A . X 10 HOH 107 407 134 HOH HOH A . X 10 HOH 108 408 277 HOH HOH A . X 10 HOH 109 409 211 HOH HOH A . X 10 HOH 110 410 158 HOH HOH A . X 10 HOH 111 411 108 HOH HOH A . X 10 HOH 112 412 100 HOH HOH A . X 10 HOH 113 413 56 HOH HOH A . X 10 HOH 114 414 190 HOH HOH A . X 10 HOH 115 415 151 HOH HOH A . X 10 HOH 116 416 82 HOH HOH A . X 10 HOH 117 417 105 HOH HOH A . X 10 HOH 118 418 189 HOH HOH A . X 10 HOH 119 419 176 HOH HOH A . X 10 HOH 120 420 43 HOH HOH A . X 10 HOH 121 421 268 HOH HOH A . X 10 HOH 122 422 245 HOH HOH A . X 10 HOH 123 423 101 HOH HOH A . X 10 HOH 124 424 99 HOH HOH A . X 10 HOH 125 425 185 HOH HOH A . X 10 HOH 126 426 3 HOH HOH A . X 10 HOH 127 427 68 HOH HOH A . X 10 HOH 128 428 102 HOH HOH A . X 10 HOH 129 429 73 HOH HOH A . X 10 HOH 130 430 218 HOH HOH A . X 10 HOH 131 431 239 HOH HOH A . X 10 HOH 132 432 165 HOH HOH A . X 10 HOH 133 433 234 HOH HOH A . X 10 HOH 134 434 226 HOH HOH A . X 10 HOH 135 435 125 HOH HOH A . X 10 HOH 136 436 248 HOH HOH A . X 10 HOH 137 437 31 HOH HOH A . X 10 HOH 138 438 144 HOH HOH A . X 10 HOH 139 439 75 HOH HOH A . X 10 HOH 140 440 179 HOH HOH A . X 10 HOH 141 441 247 HOH HOH A . X 10 HOH 142 442 203 HOH HOH A . Y 10 HOH 1 201 256 HOH HOH B . Y 10 HOH 2 202 255 HOH HOH B . Y 10 HOH 3 203 262 HOH HOH B . Y 10 HOH 4 204 266 HOH HOH B . Y 10 HOH 5 205 254 HOH HOH B . Y 10 HOH 6 206 79 HOH HOH B . Y 10 HOH 7 207 271 HOH HOH B . Y 10 HOH 8 208 150 HOH HOH B . Y 10 HOH 9 209 243 HOH HOH B . Y 10 HOH 10 210 147 HOH HOH B . Y 10 HOH 11 211 261 HOH HOH B . Y 10 HOH 12 212 132 HOH HOH B . Y 10 HOH 13 213 253 HOH HOH B . Y 10 HOH 14 214 80 HOH HOH B . Y 10 HOH 15 215 38 HOH HOH B . Y 10 HOH 16 216 272 HOH HOH B . Z 10 HOH 1 101 250 HOH HOH b . Z 10 HOH 2 102 111 HOH HOH b . Z 10 HOH 3 103 97 HOH HOH b . Z 10 HOH 4 104 274 HOH HOH b . Z 10 HOH 5 105 88 HOH HOH b . Z 10 HOH 6 106 174 HOH HOH b . Z 10 HOH 7 107 184 HOH HOH b . Z 10 HOH 8 108 183 HOH HOH b . AA 10 HOH 1 201 113 HOH HOH C . AA 10 HOH 2 202 11 HOH HOH C . AA 10 HOH 3 203 110 HOH HOH C . AA 10 HOH 4 204 19 HOH HOH C . AA 10 HOH 5 205 217 HOH HOH C . AA 10 HOH 6 206 142 HOH HOH C . AA 10 HOH 7 207 114 HOH HOH C . AA 10 HOH 8 208 33 HOH HOH C . AA 10 HOH 9 209 244 HOH HOH C . AA 10 HOH 10 210 196 HOH HOH C . AA 10 HOH 11 211 30 HOH HOH C . AA 10 HOH 12 212 191 HOH HOH C . AA 10 HOH 13 213 78 HOH HOH C . AA 10 HOH 14 214 85 HOH HOH C . AA 10 HOH 15 215 275 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6660 ? 1 MORE -117 ? 1 'SSA (A^2)' 7730 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 17 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 OD1 ? A ASP 138 ? A ASP 192 ? 1_555 98.5 ? 2 OD2 ? A ASP 17 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 O ? X HOH . ? A HOH 314 ? 1_555 95.3 ? 3 OD1 ? A ASP 138 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 O ? X HOH . ? A HOH 314 ? 1_555 91.4 ? 4 OD2 ? A ASP 17 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 O ? X HOH . ? A HOH 318 ? 1_555 86.1 ? 5 OD1 ? A ASP 138 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 O ? X HOH . ? A HOH 318 ? 1_555 81.7 ? 6 O ? X HOH . ? A HOH 314 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 O ? X HOH . ? A HOH 318 ? 1_555 173.1 ? 7 OD2 ? A ASP 17 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 92.0 ? 8 OD1 ? A ASP 138 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 169.3 ? 9 O ? X HOH . ? A HOH 314 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 89.3 ? 10 O ? X HOH . ? A HOH 318 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 97.3 ? 11 OD2 ? A ASP 17 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 O ? Z HOH . ? b HOH 105 ? 1_555 169.2 ? 12 OD1 ? A ASP 138 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 O ? Z HOH . ? b HOH 105 ? 1_555 86.1 ? 13 O ? X HOH . ? A HOH 314 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 O ? Z HOH . ? b HOH 105 ? 1_555 94.3 ? 14 O ? X HOH . ? A HOH 318 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 O ? Z HOH . ? b HOH 105 ? 1_555 84.9 ? 15 OP1 ? C C 1 ? b C 5 ? 1_555 MG ? E MG . ? A MG 201 ? 1_555 O ? Z HOH . ? b HOH 105 ? 1_555 83.2 ? 16 OD1 ? A ASP 17 ? A ASP 71 ? 1_555 MG ? F MG . ? A MG 202 ? 1_555 OE1 ? A GLU 55 ? A GLU 109 ? 1_555 96.8 ? 17 OD1 ? A ASP 17 ? A ASP 71 ? 1_555 MG ? F MG . ? A MG 202 ? 1_555 OD1 ? A ASP 78 ? A ASP 132 ? 1_555 109.7 ? 18 OE1 ? A GLU 55 ? A GLU 109 ? 1_555 MG ? F MG . ? A MG 202 ? 1_555 OD1 ? A ASP 78 ? A ASP 132 ? 1_555 107.6 ? 19 OD1 ? A ASP 17 ? A ASP 71 ? 1_555 MG ? F MG . ? A MG 202 ? 1_555 OP3 C C C 1 ? b C 5 ? 1_555 154.4 ? 20 OE1 ? A GLU 55 ? A GLU 109 ? 1_555 MG ? F MG . ? A MG 202 ? 1_555 OP3 C C C 1 ? b C 5 ? 1_555 90.2 ? 21 OD1 ? A ASP 78 ? A ASP 132 ? 1_555 MG ? F MG . ? A MG 202 ? 1_555 OP3 C C C 1 ? b C 5 ? 1_555 91.3 ? 22 OD1 ? A ASP 17 ? A ASP 71 ? 1_555 MG ? F MG . ? A MG 202 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 90.3 ? 23 OE1 ? A GLU 55 ? A GLU 109 ? 1_555 MG ? F MG . ? A MG 202 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 121.2 ? 24 OD1 ? A ASP 78 ? A ASP 132 ? 1_555 MG ? F MG . ? A MG 202 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 124.4 ? 25 OP3 C C C 1 ? b C 5 ? 1_555 MG ? F MG . ? A MG 202 ? 1_555 OP1 ? C C 1 ? b C 5 ? 1_555 65.3 ? 26 O ? A LYS 67 ? A LYS 121 ? 1_555 RB ? J RB . ? A RB 206 ? 1_555 OD1 ? A ASN 70 ? A ASN 124 ? 1_555 86.6 ? 27 O ? A LYS 67 ? A LYS 121 ? 1_555 RB ? J RB . ? A RB 206 ? 1_555 O ? X HOH . ? A HOH 410 ? 1_555 76.0 ? 28 OD1 ? A ASN 70 ? A ASN 124 ? 1_555 RB ? J RB . ? A RB 206 ? 1_555 O ? X HOH . ? A HOH 410 ? 1_555 69.7 ? 29 O ? A LYS 67 ? A LYS 121 ? 1_555 RB ? J RB . ? A RB 206 ? 1_555 O ? X HOH . ? A HOH 430 ? 1_555 101.8 ? 30 OD1 ? A ASN 70 ? A ASN 124 ? 1_555 RB ? J RB . ? A RB 206 ? 1_555 O ? X HOH . ? A HOH 430 ? 1_555 158.5 ? 31 O ? X HOH . ? A HOH 410 ? 1_555 RB ? J RB . ? A RB 206 ? 1_555 O ? X HOH . ? A HOH 430 ? 1_555 131.3 ? 32 OD2 ? A ASP 78 ? A ASP 132 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 OE1 ? A GLU 134 ? A GLU 188 ? 1_555 83.5 ? 33 OD2 ? A ASP 78 ? A ASP 132 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 O ? X HOH . ? A HOH 335 ? 1_555 139.8 ? 34 OE1 ? A GLU 134 ? A GLU 188 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 O ? X HOH . ? A HOH 335 ? 1_555 63.6 ? 35 OD2 ? A ASP 78 ? A ASP 132 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 OP1 ? B U 4 ? B U 4 ? 1_555 82.0 ? 36 OE1 ? A GLU 134 ? A GLU 188 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 OP1 ? B U 4 ? B U 4 ? 1_555 130.1 ? 37 O ? X HOH . ? A HOH 335 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 OP1 ? B U 4 ? B U 4 ? 1_555 101.3 ? 38 OD2 ? A ASP 78 ? A ASP 132 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 OP2 ? C C 1 ? b C 5 ? 1_555 82.2 ? 39 OE1 ? A GLU 134 ? A GLU 188 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 OP2 ? C C 1 ? b C 5 ? 1_555 84.0 ? 40 O ? X HOH . ? A HOH 335 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 OP2 ? C C 1 ? b C 5 ? 1_555 114.4 ? 41 OP1 ? B U 4 ? B U 4 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 OP2 ? C C 1 ? b C 5 ? 1_555 139.9 ? 42 OD2 ? A ASP 78 ? A ASP 132 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 O ? Z HOH . ? b HOH 102 ? 1_555 74.2 ? 43 OE1 ? A GLU 134 ? A GLU 188 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 O ? Z HOH . ? b HOH 102 ? 1_555 149.5 ? 44 O ? X HOH . ? A HOH 335 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 O ? Z HOH . ? b HOH 102 ? 1_555 144.4 ? 45 OP1 ? B U 4 ? B U 4 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 O ? Z HOH . ? b HOH 102 ? 1_555 67.6 ? 46 OP2 ? C C 1 ? b C 5 ? 1_555 RB ? H RB . ? A RB 204 ? 1_555 O ? Z HOH . ? b HOH 102 ? 1_555 72.7 ? 47 OD1 ? A ASP 138 ? A ASP 192 ? 1_555 RB A G RB . ? A RB 203 ? 1_555 N ? A ARG 141 ? A ARG 195 ? 1_555 124.9 ? 48 OD1 ? A ASP 138 ? A ASP 192 ? 1_555 RB A G RB . ? A RB 203 ? 1_555 N ? A ALA 142 ? A ALA 196 ? 1_555 141.6 ? 49 N ? A ARG 141 ? A ARG 195 ? 1_555 RB A G RB . ? A RB 203 ? 1_555 N ? A ALA 142 ? A ALA 196 ? 1_555 55.9 ? 50 OD1 ? A ASP 138 ? A ASP 192 ? 1_555 RB A G RB . ? A RB 203 ? 1_555 OP2 ? C G 2 ? b G 6 ? 1_555 100.0 ? 51 N ? A ARG 141 ? A ARG 195 ? 1_555 RB A G RB . ? A RB 203 ? 1_555 OP2 ? C G 2 ? b G 6 ? 1_555 131.3 ? 52 N ? A ALA 142 ? A ALA 196 ? 1_555 RB A G RB . ? A RB 203 ? 1_555 OP2 ? C G 2 ? b G 6 ? 1_555 101.1 ? 53 OD1 ? A ASP 138 ? A ASP 192 ? 1_555 RB A G RB . ? A RB 203 ? 1_555 O ? Z HOH . ? b HOH 105 ? 1_555 58.6 ? 54 N ? A ARG 141 ? A ARG 195 ? 1_555 RB A G RB . ? A RB 203 ? 1_555 O ? Z HOH . ? b HOH 105 ? 1_555 159.7 ? 55 N ? A ALA 142 ? A ALA 196 ? 1_555 RB A G RB . ? A RB 203 ? 1_555 O ? Z HOH . ? b HOH 105 ? 1_555 107.7 ? 56 OP2 ? C G 2 ? b G 6 ? 1_555 RB A G RB . ? A RB 203 ? 1_555 O ? Z HOH . ? b HOH 105 ? 1_555 59.0 ? 57 OD2 ? A ASP 138 ? A ASP 192 ? 1_555 RB C I RB . ? A RB 205 ? 1_555 O ? X HOH . ? A HOH 371 ? 1_555 129.2 ? 58 OD2 ? A ASP 138 ? A ASP 192 ? 1_555 RB C I RB . ? A RB 205 ? 1_555 O ? Z HOH . ? b HOH 105 ? 1_555 93.6 ? 59 O ? X HOH . ? A HOH 371 ? 1_555 RB C I RB . ? A RB 205 ? 1_555 O ? Z HOH . ? b HOH 105 ? 1_555 72.5 ? 60 "O2'" ? B U 4 ? B U 4 ? 1_555 RB ? T RB . ? B RB 101 ? 1_555 O2 ? B U 4 ? B U 4 ? 1_555 74.8 ? 61 "O2'" ? B U 4 ? B U 4 ? 1_555 RB ? T RB . ? B RB 101 ? 1_555 O ? Y HOH . ? B HOH 214 ? 1_555 90.7 ? 62 O2 ? B U 4 ? B U 4 ? 1_555 RB ? T RB . ? B RB 101 ? 1_555 O ? Y HOH . ? B HOH 214 ? 1_555 75.9 ? 63 "O2'" ? B U 4 ? B U 4 ? 1_555 RB ? T RB . ? B RB 101 ? 1_555 O ? AA HOH . ? C HOH 205 ? 1_555 146.4 ? 64 O2 ? B U 4 ? B U 4 ? 1_555 RB ? T RB . ? B RB 101 ? 1_555 O ? AA HOH . ? C HOH 205 ? 1_555 101.4 ? 65 O ? Y HOH . ? B HOH 214 ? 1_555 RB ? T RB . ? B RB 101 ? 1_555 O ? AA HOH . ? C HOH 205 ? 1_555 121.3 ? 66 O ? Y HOH . ? B HOH 215 ? 1_555 RB ? U RB . ? C RB 101 ? 1_555 O6 ? D DG 5 ? C DG 5 ? 1_555 105.2 ? 67 O ? Y HOH . ? B HOH 215 ? 1_555 RB ? U RB . ? C RB 101 ? 1_555 O B AA HOH . ? C HOH 207 ? 1_555 126.8 ? 68 O6 ? D DG 5 ? C DG 5 ? 1_555 RB ? U RB . ? C RB 101 ? 1_555 O B AA HOH . ? C HOH 207 ? 1_555 105.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-08-15 2 'Structure model' 1 1 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 2 'Structure model' '_pdbx_struct_conn_angle.value' 22 2 'Structure model' '_struct_conn.pdbx_dist_value' 23 2 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 24 2 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 25 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 155.3995 _pdbx_refine_tls.origin_y 28.3781 _pdbx_refine_tls.origin_z 9.2102 _pdbx_refine_tls.T[1][1] 5.4521 _pdbx_refine_tls.T[2][2] 5.3573 _pdbx_refine_tls.T[3][3] 4.6043 _pdbx_refine_tls.T[1][2] 0.5385 _pdbx_refine_tls.T[1][3] 0.4285 _pdbx_refine_tls.T[2][3] 0.8577 _pdbx_refine_tls.L[1][1] 15.3955 _pdbx_refine_tls.L[2][2] 10.7621 _pdbx_refine_tls.L[3][3] 5.3883 _pdbx_refine_tls.L[1][2] 10.4580 _pdbx_refine_tls.L[1][3] -0.6292 _pdbx_refine_tls.L[2][3] 4.1622 _pdbx_refine_tls.S[1][1] -2.0238 _pdbx_refine_tls.S[2][2] 1.4321 _pdbx_refine_tls.S[3][3] 0.8195 _pdbx_refine_tls.S[1][2] -0.6090 _pdbx_refine_tls.S[1][3] -2.4478 _pdbx_refine_tls.S[2][3] 0.2032 _pdbx_refine_tls.S[2][1] -1.1146 _pdbx_refine_tls.S[3][1] 1.2151 _pdbx_refine_tls.S[3][2] 1.4996 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id B _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id B _pdbx_refine_tls_group.end_auth_seq_id 4 _pdbx_refine_tls_group.selection_details '( CHAIN B AND RESID 1:4 ) OR ( CHAIN D AND RESID 1:17 )' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10_2155 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.31 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE2 A GLU 154 ? ? O A HOH 301 ? ? 1.92 2 1 O A TYR 193 ? ? N A ARG 195 ? ? 2.01 3 1 OH A TYR 174 ? B O A HOH 302 ? ? 2.04 4 1 O A HOH 429 ? ? O A HOH 441 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 303 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 303 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_656 _pdbx_validate_symm_contact.dist 1.58 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 b _pdbx_validate_rmsd_bond.auth_comp_id_1 C _pdbx_validate_rmsd_bond.auth_seq_id_1 5 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 b _pdbx_validate_rmsd_bond.auth_comp_id_2 C _pdbx_validate_rmsd_bond.auth_seq_id_2 5 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 C _pdbx_validate_rmsd_bond.bond_value 1.500 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.107 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 5 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 5 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 5 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.52 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.22 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 442 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.08 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B A 1 ? "O2'" ? B A 1 "O2'" 2 1 Y 1 b G 6 ? "O2'" ? C G 2 "O2'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 55 ? A GLY 1 2 1 Y 1 A SER 56 ? A SER 2 3 1 Y 1 A HIS 57 ? A HIS 3 4 1 Y 1 A MET 58 ? A MET 4 5 1 Y 1 A ALA 59 ? A ALA 5 6 1 Y 1 A LYS 60 ? A LYS 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CL CL CL N N 146 DA OP3 O N N 147 DA P P N N 148 DA OP1 O N N 149 DA OP2 O N N 150 DA "O5'" O N N 151 DA "C5'" C N N 152 DA "C4'" C N R 153 DA "O4'" O N N 154 DA "C3'" C N S 155 DA "O3'" O N N 156 DA "C2'" C N N 157 DA "C1'" C N R 158 DA N9 N Y N 159 DA C8 C Y N 160 DA N7 N Y N 161 DA C5 C Y N 162 DA C6 C Y N 163 DA N6 N N N 164 DA N1 N Y N 165 DA C2 C Y N 166 DA N3 N Y N 167 DA C4 C Y N 168 DA HOP3 H N N 169 DA HOP2 H N N 170 DA "H5'" H N N 171 DA "H5''" H N N 172 DA "H4'" H N N 173 DA "H3'" H N N 174 DA "HO3'" H N N 175 DA "H2'" H N N 176 DA "H2''" H N N 177 DA "H1'" H N N 178 DA H8 H N N 179 DA H61 H N N 180 DA H62 H N N 181 DA H2 H N N 182 DC OP3 O N N 183 DC P P N N 184 DC OP1 O N N 185 DC OP2 O N N 186 DC "O5'" O N N 187 DC "C5'" C N N 188 DC "C4'" C N R 189 DC "O4'" O N N 190 DC "C3'" C N S 191 DC "O3'" O N N 192 DC "C2'" C N N 193 DC "C1'" C N R 194 DC N1 N N N 195 DC C2 C N N 196 DC O2 O N N 197 DC N3 N N N 198 DC C4 C N N 199 DC N4 N N N 200 DC C5 C N N 201 DC C6 C N N 202 DC HOP3 H N N 203 DC HOP2 H N N 204 DC "H5'" H N N 205 DC "H5''" H N N 206 DC "H4'" H N N 207 DC "H3'" H N N 208 DC "HO3'" H N N 209 DC "H2'" H N N 210 DC "H2''" H N N 211 DC "H1'" H N N 212 DC H41 H N N 213 DC H42 H N N 214 DC H5 H N N 215 DC H6 H N N 216 DG OP3 O N N 217 DG P P N N 218 DG OP1 O N N 219 DG OP2 O N N 220 DG "O5'" O N N 221 DG "C5'" C N N 222 DG "C4'" C N R 223 DG "O4'" O N N 224 DG "C3'" C N S 225 DG "O3'" O N N 226 DG "C2'" C N N 227 DG "C1'" C N R 228 DG N9 N Y N 229 DG C8 C Y N 230 DG N7 N Y N 231 DG C5 C Y N 232 DG C6 C N N 233 DG O6 O N N 234 DG N1 N N N 235 DG C2 C N N 236 DG N2 N N N 237 DG N3 N N N 238 DG C4 C Y N 239 DG HOP3 H N N 240 DG HOP2 H N N 241 DG "H5'" H N N 242 DG "H5''" H N N 243 DG "H4'" H N N 244 DG "H3'" H N N 245 DG "HO3'" H N N 246 DG "H2'" H N N 247 DG "H2''" H N N 248 DG "H1'" H N N 249 DG H8 H N N 250 DG H1 H N N 251 DG H21 H N N 252 DG H22 H N N 253 DT OP3 O N N 254 DT P P N N 255 DT OP1 O N N 256 DT OP2 O N N 257 DT "O5'" O N N 258 DT "C5'" C N N 259 DT "C4'" C N R 260 DT "O4'" O N N 261 DT "C3'" C N S 262 DT "O3'" O N N 263 DT "C2'" C N N 264 DT "C1'" C N R 265 DT N1 N N N 266 DT C2 C N N 267 DT O2 O N N 268 DT N3 N N N 269 DT C4 C N N 270 DT O4 O N N 271 DT C5 C N N 272 DT C7 C N N 273 DT C6 C N N 274 DT HOP3 H N N 275 DT HOP2 H N N 276 DT "H5'" H N N 277 DT "H5''" H N N 278 DT "H4'" H N N 279 DT "H3'" H N N 280 DT "HO3'" H N N 281 DT "H2'" H N N 282 DT "H2''" H N N 283 DT "H1'" H N N 284 DT H3 H N N 285 DT H71 H N N 286 DT H72 H N N 287 DT H73 H N N 288 DT H6 H N N 289 EDO C1 C N N 290 EDO O1 O N N 291 EDO C2 C N N 292 EDO O2 O N N 293 EDO H11 H N N 294 EDO H12 H N N 295 EDO HO1 H N N 296 EDO H21 H N N 297 EDO H22 H N N 298 EDO HO2 H N N 299 G OP3 O N N 300 G P P N N 301 G OP1 O N N 302 G OP2 O N N 303 G "O5'" O N N 304 G "C5'" C N N 305 G "C4'" C N R 306 G "O4'" O N N 307 G "C3'" C N S 308 G "O3'" O N N 309 G "C2'" C N R 310 G "O2'" O N N 311 G "C1'" C N R 312 G N9 N Y N 313 G C8 C Y N 314 G N7 N Y N 315 G C5 C Y N 316 G C6 C N N 317 G O6 O N N 318 G N1 N N N 319 G C2 C N N 320 G N2 N N N 321 G N3 N N N 322 G C4 C Y N 323 G HOP3 H N N 324 G HOP2 H N N 325 G "H5'" H N N 326 G "H5''" H N N 327 G "H4'" H N N 328 G "H3'" H N N 329 G "HO3'" H N N 330 G "H2'" H N N 331 G "HO2'" H N N 332 G "H1'" H N N 333 G H8 H N N 334 G H1 H N N 335 G H21 H N N 336 G H22 H N N 337 GLN N N N N 338 GLN CA C N S 339 GLN C C N N 340 GLN O O N N 341 GLN CB C N N 342 GLN CG C N N 343 GLN CD C N N 344 GLN OE1 O N N 345 GLN NE2 N N N 346 GLN OXT O N N 347 GLN H H N N 348 GLN H2 H N N 349 GLN HA H N N 350 GLN HB2 H N N 351 GLN HB3 H N N 352 GLN HG2 H N N 353 GLN HG3 H N N 354 GLN HE21 H N N 355 GLN HE22 H N N 356 GLN HXT H N N 357 GLU N N N N 358 GLU CA C N S 359 GLU C C N N 360 GLU O O N N 361 GLU CB C N N 362 GLU CG C N N 363 GLU CD C N N 364 GLU OE1 O N N 365 GLU OE2 O N N 366 GLU OXT O N N 367 GLU H H N N 368 GLU H2 H N N 369 GLU HA H N N 370 GLU HB2 H N N 371 GLU HB3 H N N 372 GLU HG2 H N N 373 GLU HG3 H N N 374 GLU HE2 H N N 375 GLU HXT H N N 376 GLY N N N N 377 GLY CA C N N 378 GLY C C N N 379 GLY O O N N 380 GLY OXT O N N 381 GLY H H N N 382 GLY H2 H N N 383 GLY HA2 H N N 384 GLY HA3 H N N 385 GLY HXT H N N 386 GOL C1 C N N 387 GOL O1 O N N 388 GOL C2 C N N 389 GOL O2 O N N 390 GOL C3 C N N 391 GOL O3 O N N 392 GOL H11 H N N 393 GOL H12 H N N 394 GOL HO1 H N N 395 GOL H2 H N N 396 GOL HO2 H N N 397 GOL H31 H N N 398 GOL H32 H N N 399 GOL HO3 H N N 400 HIS N N N N 401 HIS CA C N S 402 HIS C C N N 403 HIS O O N N 404 HIS CB C N N 405 HIS CG C Y N 406 HIS ND1 N Y N 407 HIS CD2 C Y N 408 HIS CE1 C Y N 409 HIS NE2 N Y N 410 HIS OXT O N N 411 HIS H H N N 412 HIS H2 H N N 413 HIS HA H N N 414 HIS HB2 H N N 415 HIS HB3 H N N 416 HIS HD1 H N N 417 HIS HD2 H N N 418 HIS HE1 H N N 419 HIS HE2 H N N 420 HIS HXT H N N 421 HOH O O N N 422 HOH H1 H N N 423 HOH H2 H N N 424 ILE N N N N 425 ILE CA C N S 426 ILE C C N N 427 ILE O O N N 428 ILE CB C N S 429 ILE CG1 C N N 430 ILE CG2 C N N 431 ILE CD1 C N N 432 ILE OXT O N N 433 ILE H H N N 434 ILE H2 H N N 435 ILE HA H N N 436 ILE HB H N N 437 ILE HG12 H N N 438 ILE HG13 H N N 439 ILE HG21 H N N 440 ILE HG22 H N N 441 ILE HG23 H N N 442 ILE HD11 H N N 443 ILE HD12 H N N 444 ILE HD13 H N N 445 ILE HXT H N N 446 LEU N N N N 447 LEU CA C N S 448 LEU C C N N 449 LEU O O N N 450 LEU CB C N N 451 LEU CG C N N 452 LEU CD1 C N N 453 LEU CD2 C N N 454 LEU OXT O N N 455 LEU H H N N 456 LEU H2 H N N 457 LEU HA H N N 458 LEU HB2 H N N 459 LEU HB3 H N N 460 LEU HG H N N 461 LEU HD11 H N N 462 LEU HD12 H N N 463 LEU HD13 H N N 464 LEU HD21 H N N 465 LEU HD22 H N N 466 LEU HD23 H N N 467 LEU HXT H N N 468 LYS N N N N 469 LYS CA C N S 470 LYS C C N N 471 LYS O O N N 472 LYS CB C N N 473 LYS CG C N N 474 LYS CD C N N 475 LYS CE C N N 476 LYS NZ N N N 477 LYS OXT O N N 478 LYS H H N N 479 LYS H2 H N N 480 LYS HA H N N 481 LYS HB2 H N N 482 LYS HB3 H N N 483 LYS HG2 H N N 484 LYS HG3 H N N 485 LYS HD2 H N N 486 LYS HD3 H N N 487 LYS HE2 H N N 488 LYS HE3 H N N 489 LYS HZ1 H N N 490 LYS HZ2 H N N 491 LYS HZ3 H N N 492 LYS HXT H N N 493 MET N N N N 494 MET CA C N S 495 MET C C N N 496 MET O O N N 497 MET CB C N N 498 MET CG C N N 499 MET SD S N N 500 MET CE C N N 501 MET OXT O N N 502 MET H H N N 503 MET H2 H N N 504 MET HA H N N 505 MET HB2 H N N 506 MET HB3 H N N 507 MET HG2 H N N 508 MET HG3 H N N 509 MET HE1 H N N 510 MET HE2 H N N 511 MET HE3 H N N 512 MET HXT H N N 513 MG MG MG N N 514 PHE N N N N 515 PHE CA C N S 516 PHE C C N N 517 PHE O O N N 518 PHE CB C N N 519 PHE CG C Y N 520 PHE CD1 C Y N 521 PHE CD2 C Y N 522 PHE CE1 C Y N 523 PHE CE2 C Y N 524 PHE CZ C Y N 525 PHE OXT O N N 526 PHE H H N N 527 PHE H2 H N N 528 PHE HA H N N 529 PHE HB2 H N N 530 PHE HB3 H N N 531 PHE HD1 H N N 532 PHE HD2 H N N 533 PHE HE1 H N N 534 PHE HE2 H N N 535 PHE HZ H N N 536 PHE HXT H N N 537 PRO N N N N 538 PRO CA C N S 539 PRO C C N N 540 PRO O O N N 541 PRO CB C N N 542 PRO CG C N N 543 PRO CD C N N 544 PRO OXT O N N 545 PRO H H N N 546 PRO HA H N N 547 PRO HB2 H N N 548 PRO HB3 H N N 549 PRO HG2 H N N 550 PRO HG3 H N N 551 PRO HD2 H N N 552 PRO HD3 H N N 553 PRO HXT H N N 554 RB RB RB N N 555 SER N N N N 556 SER CA C N S 557 SER C C N N 558 SER O O N N 559 SER CB C N N 560 SER OG O N N 561 SER OXT O N N 562 SER H H N N 563 SER H2 H N N 564 SER HA H N N 565 SER HB2 H N N 566 SER HB3 H N N 567 SER HG H N N 568 SER HXT H N N 569 THR N N N N 570 THR CA C N S 571 THR C C N N 572 THR O O N N 573 THR CB C N R 574 THR OG1 O N N 575 THR CG2 C N N 576 THR OXT O N N 577 THR H H N N 578 THR H2 H N N 579 THR HA H N N 580 THR HB H N N 581 THR HG1 H N N 582 THR HG21 H N N 583 THR HG22 H N N 584 THR HG23 H N N 585 THR HXT H N N 586 TRP N N N N 587 TRP CA C N S 588 TRP C C N N 589 TRP O O N N 590 TRP CB C N N 591 TRP CG C Y N 592 TRP CD1 C Y N 593 TRP CD2 C Y N 594 TRP NE1 N Y N 595 TRP CE2 C Y N 596 TRP CE3 C Y N 597 TRP CZ2 C Y N 598 TRP CZ3 C Y N 599 TRP CH2 C Y N 600 TRP OXT O N N 601 TRP H H N N 602 TRP H2 H N N 603 TRP HA H N N 604 TRP HB2 H N N 605 TRP HB3 H N N 606 TRP HD1 H N N 607 TRP HE1 H N N 608 TRP HE3 H N N 609 TRP HZ2 H N N 610 TRP HZ3 H N N 611 TRP HH2 H N N 612 TRP HXT H N N 613 TYR N N N N 614 TYR CA C N S 615 TYR C C N N 616 TYR O O N N 617 TYR CB C N N 618 TYR CG C Y N 619 TYR CD1 C Y N 620 TYR CD2 C Y N 621 TYR CE1 C Y N 622 TYR CE2 C Y N 623 TYR CZ C Y N 624 TYR OH O N N 625 TYR OXT O N N 626 TYR H H N N 627 TYR H2 H N N 628 TYR HA H N N 629 TYR HB2 H N N 630 TYR HB3 H N N 631 TYR HD1 H N N 632 TYR HD2 H N N 633 TYR HE1 H N N 634 TYR HE2 H N N 635 TYR HH H N N 636 TYR HXT H N N 637 U OP3 O N N 638 U P P N N 639 U OP1 O N N 640 U OP2 O N N 641 U "O5'" O N N 642 U "C5'" C N N 643 U "C4'" C N R 644 U "O4'" O N N 645 U "C3'" C N S 646 U "O3'" O N N 647 U "C2'" C N R 648 U "O2'" O N N 649 U "C1'" C N R 650 U N1 N N N 651 U C2 C N N 652 U O2 O N N 653 U N3 N N N 654 U C4 C N N 655 U O4 O N N 656 U C5 C N N 657 U C6 C N N 658 U HOP3 H N N 659 U HOP2 H N N 660 U "H5'" H N N 661 U "H5''" H N N 662 U "H4'" H N N 663 U "H3'" H N N 664 U "HO3'" H N N 665 U "H2'" H N N 666 U "HO2'" H N N 667 U "H1'" H N N 668 U H3 H N N 669 U H5 H N N 670 U H6 H N N 671 VAL N N N N 672 VAL CA C N S 673 VAL C C N N 674 VAL O O N N 675 VAL CB C N N 676 VAL CG1 C N N 677 VAL CG2 C N N 678 VAL OXT O N N 679 VAL H H N N 680 VAL H2 H N N 681 VAL HA H N N 682 VAL HB H N N 683 VAL HG11 H N N 684 VAL HG12 H N N 685 VAL HG13 H N N 686 VAL HG21 H N N 687 VAL HG22 H N N 688 VAL HG23 H N N 689 VAL HXT H N N 690 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 DA OP3 P sing N N 145 DA OP3 HOP3 sing N N 146 DA P OP1 doub N N 147 DA P OP2 sing N N 148 DA P "O5'" sing N N 149 DA OP2 HOP2 sing N N 150 DA "O5'" "C5'" sing N N 151 DA "C5'" "C4'" sing N N 152 DA "C5'" "H5'" sing N N 153 DA "C5'" "H5''" sing N N 154 DA "C4'" "O4'" sing N N 155 DA "C4'" "C3'" sing N N 156 DA "C4'" "H4'" sing N N 157 DA "O4'" "C1'" sing N N 158 DA "C3'" "O3'" sing N N 159 DA "C3'" "C2'" sing N N 160 DA "C3'" "H3'" sing N N 161 DA "O3'" "HO3'" sing N N 162 DA "C2'" "C1'" sing N N 163 DA "C2'" "H2'" sing N N 164 DA "C2'" "H2''" sing N N 165 DA "C1'" N9 sing N N 166 DA "C1'" "H1'" sing N N 167 DA N9 C8 sing Y N 168 DA N9 C4 sing Y N 169 DA C8 N7 doub Y N 170 DA C8 H8 sing N N 171 DA N7 C5 sing Y N 172 DA C5 C6 sing Y N 173 DA C5 C4 doub Y N 174 DA C6 N6 sing N N 175 DA C6 N1 doub Y N 176 DA N6 H61 sing N N 177 DA N6 H62 sing N N 178 DA N1 C2 sing Y N 179 DA C2 N3 doub Y N 180 DA C2 H2 sing N N 181 DA N3 C4 sing Y N 182 DC OP3 P sing N N 183 DC OP3 HOP3 sing N N 184 DC P OP1 doub N N 185 DC P OP2 sing N N 186 DC P "O5'" sing N N 187 DC OP2 HOP2 sing N N 188 DC "O5'" "C5'" sing N N 189 DC "C5'" "C4'" sing N N 190 DC "C5'" "H5'" sing N N 191 DC "C5'" "H5''" sing N N 192 DC "C4'" "O4'" sing N N 193 DC "C4'" "C3'" sing N N 194 DC "C4'" "H4'" sing N N 195 DC "O4'" "C1'" sing N N 196 DC "C3'" "O3'" sing N N 197 DC "C3'" "C2'" sing N N 198 DC "C3'" "H3'" sing N N 199 DC "O3'" "HO3'" sing N N 200 DC "C2'" "C1'" sing N N 201 DC "C2'" "H2'" sing N N 202 DC "C2'" "H2''" sing N N 203 DC "C1'" N1 sing N N 204 DC "C1'" "H1'" sing N N 205 DC N1 C2 sing N N 206 DC N1 C6 sing N N 207 DC C2 O2 doub N N 208 DC C2 N3 sing N N 209 DC N3 C4 doub N N 210 DC C4 N4 sing N N 211 DC C4 C5 sing N N 212 DC N4 H41 sing N N 213 DC N4 H42 sing N N 214 DC C5 C6 doub N N 215 DC C5 H5 sing N N 216 DC C6 H6 sing N N 217 DG OP3 P sing N N 218 DG OP3 HOP3 sing N N 219 DG P OP1 doub N N 220 DG P OP2 sing N N 221 DG P "O5'" sing N N 222 DG OP2 HOP2 sing N N 223 DG "O5'" "C5'" sing N N 224 DG "C5'" "C4'" sing N N 225 DG "C5'" "H5'" sing N N 226 DG "C5'" "H5''" sing N N 227 DG "C4'" "O4'" sing N N 228 DG "C4'" "C3'" sing N N 229 DG "C4'" "H4'" sing N N 230 DG "O4'" "C1'" sing N N 231 DG "C3'" "O3'" sing N N 232 DG "C3'" "C2'" sing N N 233 DG "C3'" "H3'" sing N N 234 DG "O3'" "HO3'" sing N N 235 DG "C2'" "C1'" sing N N 236 DG "C2'" "H2'" sing N N 237 DG "C2'" "H2''" sing N N 238 DG "C1'" N9 sing N N 239 DG "C1'" "H1'" sing N N 240 DG N9 C8 sing Y N 241 DG N9 C4 sing Y N 242 DG C8 N7 doub Y N 243 DG C8 H8 sing N N 244 DG N7 C5 sing Y N 245 DG C5 C6 sing N N 246 DG C5 C4 doub Y N 247 DG C6 O6 doub N N 248 DG C6 N1 sing N N 249 DG N1 C2 sing N N 250 DG N1 H1 sing N N 251 DG C2 N2 sing N N 252 DG C2 N3 doub N N 253 DG N2 H21 sing N N 254 DG N2 H22 sing N N 255 DG N3 C4 sing N N 256 DT OP3 P sing N N 257 DT OP3 HOP3 sing N N 258 DT P OP1 doub N N 259 DT P OP2 sing N N 260 DT P "O5'" sing N N 261 DT OP2 HOP2 sing N N 262 DT "O5'" "C5'" sing N N 263 DT "C5'" "C4'" sing N N 264 DT "C5'" "H5'" sing N N 265 DT "C5'" "H5''" sing N N 266 DT "C4'" "O4'" sing N N 267 DT "C4'" "C3'" sing N N 268 DT "C4'" "H4'" sing N N 269 DT "O4'" "C1'" sing N N 270 DT "C3'" "O3'" sing N N 271 DT "C3'" "C2'" sing N N 272 DT "C3'" "H3'" sing N N 273 DT "O3'" "HO3'" sing N N 274 DT "C2'" "C1'" sing N N 275 DT "C2'" "H2'" sing N N 276 DT "C2'" "H2''" sing N N 277 DT "C1'" N1 sing N N 278 DT "C1'" "H1'" sing N N 279 DT N1 C2 sing N N 280 DT N1 C6 sing N N 281 DT C2 O2 doub N N 282 DT C2 N3 sing N N 283 DT N3 C4 sing N N 284 DT N3 H3 sing N N 285 DT C4 O4 doub N N 286 DT C4 C5 sing N N 287 DT C5 C7 sing N N 288 DT C5 C6 doub N N 289 DT C7 H71 sing N N 290 DT C7 H72 sing N N 291 DT C7 H73 sing N N 292 DT C6 H6 sing N N 293 EDO C1 O1 sing N N 294 EDO C1 C2 sing N N 295 EDO C1 H11 sing N N 296 EDO C1 H12 sing N N 297 EDO O1 HO1 sing N N 298 EDO C2 O2 sing N N 299 EDO C2 H21 sing N N 300 EDO C2 H22 sing N N 301 EDO O2 HO2 sing N N 302 G OP3 P sing N N 303 G OP3 HOP3 sing N N 304 G P OP1 doub N N 305 G P OP2 sing N N 306 G P "O5'" sing N N 307 G OP2 HOP2 sing N N 308 G "O5'" "C5'" sing N N 309 G "C5'" "C4'" sing N N 310 G "C5'" "H5'" sing N N 311 G "C5'" "H5''" sing N N 312 G "C4'" "O4'" sing N N 313 G "C4'" "C3'" sing N N 314 G "C4'" "H4'" sing N N 315 G "O4'" "C1'" sing N N 316 G "C3'" "O3'" sing N N 317 G "C3'" "C2'" sing N N 318 G "C3'" "H3'" sing N N 319 G "O3'" "HO3'" sing N N 320 G "C2'" "O2'" sing N N 321 G "C2'" "C1'" sing N N 322 G "C2'" "H2'" sing N N 323 G "O2'" "HO2'" sing N N 324 G "C1'" N9 sing N N 325 G "C1'" "H1'" sing N N 326 G N9 C8 sing Y N 327 G N9 C4 sing Y N 328 G C8 N7 doub Y N 329 G C8 H8 sing N N 330 G N7 C5 sing Y N 331 G C5 C6 sing N N 332 G C5 C4 doub Y N 333 G C6 O6 doub N N 334 G C6 N1 sing N N 335 G N1 C2 sing N N 336 G N1 H1 sing N N 337 G C2 N2 sing N N 338 G C2 N3 doub N N 339 G N2 H21 sing N N 340 G N2 H22 sing N N 341 G N3 C4 sing N N 342 GLN N CA sing N N 343 GLN N H sing N N 344 GLN N H2 sing N N 345 GLN CA C sing N N 346 GLN CA CB sing N N 347 GLN CA HA sing N N 348 GLN C O doub N N 349 GLN C OXT sing N N 350 GLN CB CG sing N N 351 GLN CB HB2 sing N N 352 GLN CB HB3 sing N N 353 GLN CG CD sing N N 354 GLN CG HG2 sing N N 355 GLN CG HG3 sing N N 356 GLN CD OE1 doub N N 357 GLN CD NE2 sing N N 358 GLN NE2 HE21 sing N N 359 GLN NE2 HE22 sing N N 360 GLN OXT HXT sing N N 361 GLU N CA sing N N 362 GLU N H sing N N 363 GLU N H2 sing N N 364 GLU CA C sing N N 365 GLU CA CB sing N N 366 GLU CA HA sing N N 367 GLU C O doub N N 368 GLU C OXT sing N N 369 GLU CB CG sing N N 370 GLU CB HB2 sing N N 371 GLU CB HB3 sing N N 372 GLU CG CD sing N N 373 GLU CG HG2 sing N N 374 GLU CG HG3 sing N N 375 GLU CD OE1 doub N N 376 GLU CD OE2 sing N N 377 GLU OE2 HE2 sing N N 378 GLU OXT HXT sing N N 379 GLY N CA sing N N 380 GLY N H sing N N 381 GLY N H2 sing N N 382 GLY CA C sing N N 383 GLY CA HA2 sing N N 384 GLY CA HA3 sing N N 385 GLY C O doub N N 386 GLY C OXT sing N N 387 GLY OXT HXT sing N N 388 GOL C1 O1 sing N N 389 GOL C1 C2 sing N N 390 GOL C1 H11 sing N N 391 GOL C1 H12 sing N N 392 GOL O1 HO1 sing N N 393 GOL C2 O2 sing N N 394 GOL C2 C3 sing N N 395 GOL C2 H2 sing N N 396 GOL O2 HO2 sing N N 397 GOL C3 O3 sing N N 398 GOL C3 H31 sing N N 399 GOL C3 H32 sing N N 400 GOL O3 HO3 sing N N 401 HIS N CA sing N N 402 HIS N H sing N N 403 HIS N H2 sing N N 404 HIS CA C sing N N 405 HIS CA CB sing N N 406 HIS CA HA sing N N 407 HIS C O doub N N 408 HIS C OXT sing N N 409 HIS CB CG sing N N 410 HIS CB HB2 sing N N 411 HIS CB HB3 sing N N 412 HIS CG ND1 sing Y N 413 HIS CG CD2 doub Y N 414 HIS ND1 CE1 doub Y N 415 HIS ND1 HD1 sing N N 416 HIS CD2 NE2 sing Y N 417 HIS CD2 HD2 sing N N 418 HIS CE1 NE2 sing Y N 419 HIS CE1 HE1 sing N N 420 HIS NE2 HE2 sing N N 421 HIS OXT HXT sing N N 422 HOH O H1 sing N N 423 HOH O H2 sing N N 424 ILE N CA sing N N 425 ILE N H sing N N 426 ILE N H2 sing N N 427 ILE CA C sing N N 428 ILE CA CB sing N N 429 ILE CA HA sing N N 430 ILE C O doub N N 431 ILE C OXT sing N N 432 ILE CB CG1 sing N N 433 ILE CB CG2 sing N N 434 ILE CB HB sing N N 435 ILE CG1 CD1 sing N N 436 ILE CG1 HG12 sing N N 437 ILE CG1 HG13 sing N N 438 ILE CG2 HG21 sing N N 439 ILE CG2 HG22 sing N N 440 ILE CG2 HG23 sing N N 441 ILE CD1 HD11 sing N N 442 ILE CD1 HD12 sing N N 443 ILE CD1 HD13 sing N N 444 ILE OXT HXT sing N N 445 LEU N CA sing N N 446 LEU N H sing N N 447 LEU N H2 sing N N 448 LEU CA C sing N N 449 LEU CA CB sing N N 450 LEU CA HA sing N N 451 LEU C O doub N N 452 LEU C OXT sing N N 453 LEU CB CG sing N N 454 LEU CB HB2 sing N N 455 LEU CB HB3 sing N N 456 LEU CG CD1 sing N N 457 LEU CG CD2 sing N N 458 LEU CG HG sing N N 459 LEU CD1 HD11 sing N N 460 LEU CD1 HD12 sing N N 461 LEU CD1 HD13 sing N N 462 LEU CD2 HD21 sing N N 463 LEU CD2 HD22 sing N N 464 LEU CD2 HD23 sing N N 465 LEU OXT HXT sing N N 466 LYS N CA sing N N 467 LYS N H sing N N 468 LYS N H2 sing N N 469 LYS CA C sing N N 470 LYS CA CB sing N N 471 LYS CA HA sing N N 472 LYS C O doub N N 473 LYS C OXT sing N N 474 LYS CB CG sing N N 475 LYS CB HB2 sing N N 476 LYS CB HB3 sing N N 477 LYS CG CD sing N N 478 LYS CG HG2 sing N N 479 LYS CG HG3 sing N N 480 LYS CD CE sing N N 481 LYS CD HD2 sing N N 482 LYS CD HD3 sing N N 483 LYS CE NZ sing N N 484 LYS CE HE2 sing N N 485 LYS CE HE3 sing N N 486 LYS NZ HZ1 sing N N 487 LYS NZ HZ2 sing N N 488 LYS NZ HZ3 sing N N 489 LYS OXT HXT sing N N 490 MET N CA sing N N 491 MET N H sing N N 492 MET N H2 sing N N 493 MET CA C sing N N 494 MET CA CB sing N N 495 MET CA HA sing N N 496 MET C O doub N N 497 MET C OXT sing N N 498 MET CB CG sing N N 499 MET CB HB2 sing N N 500 MET CB HB3 sing N N 501 MET CG SD sing N N 502 MET CG HG2 sing N N 503 MET CG HG3 sing N N 504 MET SD CE sing N N 505 MET CE HE1 sing N N 506 MET CE HE2 sing N N 507 MET CE HE3 sing N N 508 MET OXT HXT sing N N 509 PHE N CA sing N N 510 PHE N H sing N N 511 PHE N H2 sing N N 512 PHE CA C sing N N 513 PHE CA CB sing N N 514 PHE CA HA sing N N 515 PHE C O doub N N 516 PHE C OXT sing N N 517 PHE CB CG sing N N 518 PHE CB HB2 sing N N 519 PHE CB HB3 sing N N 520 PHE CG CD1 doub Y N 521 PHE CG CD2 sing Y N 522 PHE CD1 CE1 sing Y N 523 PHE CD1 HD1 sing N N 524 PHE CD2 CE2 doub Y N 525 PHE CD2 HD2 sing N N 526 PHE CE1 CZ doub Y N 527 PHE CE1 HE1 sing N N 528 PHE CE2 CZ sing Y N 529 PHE CE2 HE2 sing N N 530 PHE CZ HZ sing N N 531 PHE OXT HXT sing N N 532 PRO N CA sing N N 533 PRO N CD sing N N 534 PRO N H sing N N 535 PRO CA C sing N N 536 PRO CA CB sing N N 537 PRO CA HA sing N N 538 PRO C O doub N N 539 PRO C OXT sing N N 540 PRO CB CG sing N N 541 PRO CB HB2 sing N N 542 PRO CB HB3 sing N N 543 PRO CG CD sing N N 544 PRO CG HG2 sing N N 545 PRO CG HG3 sing N N 546 PRO CD HD2 sing N N 547 PRO CD HD3 sing N N 548 PRO OXT HXT sing N N 549 SER N CA sing N N 550 SER N H sing N N 551 SER N H2 sing N N 552 SER CA C sing N N 553 SER CA CB sing N N 554 SER CA HA sing N N 555 SER C O doub N N 556 SER C OXT sing N N 557 SER CB OG sing N N 558 SER CB HB2 sing N N 559 SER CB HB3 sing N N 560 SER OG HG sing N N 561 SER OXT HXT sing N N 562 THR N CA sing N N 563 THR N H sing N N 564 THR N H2 sing N N 565 THR CA C sing N N 566 THR CA CB sing N N 567 THR CA HA sing N N 568 THR C O doub N N 569 THR C OXT sing N N 570 THR CB OG1 sing N N 571 THR CB CG2 sing N N 572 THR CB HB sing N N 573 THR OG1 HG1 sing N N 574 THR CG2 HG21 sing N N 575 THR CG2 HG22 sing N N 576 THR CG2 HG23 sing N N 577 THR OXT HXT sing N N 578 TRP N CA sing N N 579 TRP N H sing N N 580 TRP N H2 sing N N 581 TRP CA C sing N N 582 TRP CA CB sing N N 583 TRP CA HA sing N N 584 TRP C O doub N N 585 TRP C OXT sing N N 586 TRP CB CG sing N N 587 TRP CB HB2 sing N N 588 TRP CB HB3 sing N N 589 TRP CG CD1 doub Y N 590 TRP CG CD2 sing Y N 591 TRP CD1 NE1 sing Y N 592 TRP CD1 HD1 sing N N 593 TRP CD2 CE2 doub Y N 594 TRP CD2 CE3 sing Y N 595 TRP NE1 CE2 sing Y N 596 TRP NE1 HE1 sing N N 597 TRP CE2 CZ2 sing Y N 598 TRP CE3 CZ3 doub Y N 599 TRP CE3 HE3 sing N N 600 TRP CZ2 CH2 doub Y N 601 TRP CZ2 HZ2 sing N N 602 TRP CZ3 CH2 sing Y N 603 TRP CZ3 HZ3 sing N N 604 TRP CH2 HH2 sing N N 605 TRP OXT HXT sing N N 606 TYR N CA sing N N 607 TYR N H sing N N 608 TYR N H2 sing N N 609 TYR CA C sing N N 610 TYR CA CB sing N N 611 TYR CA HA sing N N 612 TYR C O doub N N 613 TYR C OXT sing N N 614 TYR CB CG sing N N 615 TYR CB HB2 sing N N 616 TYR CB HB3 sing N N 617 TYR CG CD1 doub Y N 618 TYR CG CD2 sing Y N 619 TYR CD1 CE1 sing Y N 620 TYR CD1 HD1 sing N N 621 TYR CD2 CE2 doub Y N 622 TYR CD2 HD2 sing N N 623 TYR CE1 CZ doub Y N 624 TYR CE1 HE1 sing N N 625 TYR CE2 CZ sing Y N 626 TYR CE2 HE2 sing N N 627 TYR CZ OH sing N N 628 TYR OH HH sing N N 629 TYR OXT HXT sing N N 630 U OP3 P sing N N 631 U OP3 HOP3 sing N N 632 U P OP1 doub N N 633 U P OP2 sing N N 634 U P "O5'" sing N N 635 U OP2 HOP2 sing N N 636 U "O5'" "C5'" sing N N 637 U "C5'" "C4'" sing N N 638 U "C5'" "H5'" sing N N 639 U "C5'" "H5''" sing N N 640 U "C4'" "O4'" sing N N 641 U "C4'" "C3'" sing N N 642 U "C4'" "H4'" sing N N 643 U "O4'" "C1'" sing N N 644 U "C3'" "O3'" sing N N 645 U "C3'" "C2'" sing N N 646 U "C3'" "H3'" sing N N 647 U "O3'" "HO3'" sing N N 648 U "C2'" "O2'" sing N N 649 U "C2'" "C1'" sing N N 650 U "C2'" "H2'" sing N N 651 U "O2'" "HO2'" sing N N 652 U "C1'" N1 sing N N 653 U "C1'" "H1'" sing N N 654 U N1 C2 sing N N 655 U N1 C6 sing N N 656 U C2 O2 doub N N 657 U C2 N3 sing N N 658 U N3 C4 sing N N 659 U N3 H3 sing N N 660 U C4 O4 doub N N 661 U C4 C5 sing N N 662 U C5 C6 doub N N 663 U C5 H5 sing N N 664 U C6 H6 sing N N 665 VAL N CA sing N N 666 VAL N H sing N N 667 VAL N H2 sing N N 668 VAL CA C sing N N 669 VAL CA CB sing N N 670 VAL CA HA sing N N 671 VAL C O doub N N 672 VAL C OXT sing N N 673 VAL CB CG1 sing N N 674 VAL CB CG2 sing N N 675 VAL CB HB sing N N 676 VAL CG1 HG11 sing N N 677 VAL CG1 HG12 sing N N 678 VAL CG1 HG13 sing N N 679 VAL CG2 HG21 sing N N 680 VAL CG2 HG22 sing N N 681 VAL CG2 HG23 sing N N 682 VAL OXT HXT sing N N 683 # _ndb_struct_conf_na.entry_id 6DPM _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B A 1 1_555 D DT 6 1_555 0.029 -0.106 -0.237 -12.642 -6.905 -1.325 1 B_A1:DT6_C B 1 ? C 6 ? 20 1 1 B C 2 1_555 D DG 5 1_555 0.133 -0.118 -0.049 -4.391 -8.515 2.845 2 B_C2:DG5_C B 2 ? C 5 ? 19 1 1 B A 3 1_555 D DT 4 1_555 0.143 -0.135 -0.168 -5.302 -9.002 3.637 3 B_A3:DT4_C B 3 ? C 4 ? 20 1 1 B U 4 1_555 D DA 3 1_555 -0.002 -1.137 0.423 -15.849 16.058 -170.062 4 B_U4:DA3_C B 4 ? C 3 ? 21 2 1 C C 1 1_555 D DG 2 1_555 0.177 -0.237 0.077 -9.421 -10.327 1.015 5 b_C5:DG2_C b 5 ? C 2 ? 19 1 1 C G 2 1_555 D DC 1 1_555 -0.231 -0.147 -0.104 -9.674 -7.685 -0.386 6 b_G6:DC1_C b 6 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B A 1 1_555 D DT 6 1_555 B C 2 1_555 D DG 5 1_555 0.578 -1.333 3.210 -1.474 3.919 35.429 -2.720 -1.149 3.024 6.412 2.412 35.668 1 BB_A1C2:DG5DT6_CC B 1 ? C 6 ? B 2 ? C 5 ? 1 B C 2 1_555 D DG 5 1_555 B A 3 1_555 D DT 4 1_555 -0.224 -1.331 3.374 2.989 11.717 24.829 -5.485 1.157 2.463 25.415 -6.484 27.575 2 BB_C2A3:DT4DG5_CC B 2 ? C 5 ? B 3 ? C 4 ? 1 B A 3 1_555 D DT 4 1_555 B U 4 1_555 D DA 3 1_555 2.329 -1.710 -1.305 -99.473 -143.440 -46.099 0.343 1.521 -0.583 73.080 -50.680 -174.991 3 BB_A3U4:DA3DT4_CC B 3 ? C 4 ? B 4 ? C 3 ? 1 B U 4 1_555 D DA 3 1_555 C C 1 1_555 D DG 2 1_555 -3.838 2.511 -0.576 -155.191 -70.781 -139.045 -1.330 -1.759 -1.394 35.514 -77.865 -176.704 4 Bb_U4C5:DG2DA3_CC B 4 ? C 3 ? b 5 ? C 2 ? 1 C C 1 1_555 D DG 2 1_555 C G 2 1_555 D DC 1 1_555 0.947 -2.141 3.366 6.400 5.525 23.746 -6.522 -0.304 2.951 12.914 -14.960 25.186 5 bb_C5G6:DC1DG2_CC b 5 ? C 2 ? b 6 ? C 1 ? # _pdbx_deposit_group.group_id G_1001001 _pdbx_deposit_group.group_description ;The structures represent different time points in the divalent and monovalent metal-dependent hydrolysis reaction of RNA by Ribonuclease H1, which is bound to an RNA/DNA hybrid in the crystal. ; _pdbx_deposit_group.group_title 'Cleavage of RNA by B. Halodurans Ribonuclease H1' _pdbx_deposit_group.group_type undefined # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'MAGNESIUM ION' MG 6 'RUBIDIUM ION' RB 7 'CHLORIDE ION' CL 8 GLYCEROL GOL 9 1,2-ETHANEDIOL EDO 10 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ZBL _pdbx_initial_refinement_model.details 'pdbid 1ZBL' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #