HEADER HYDROLASE 11-JUN-18 6DQH TITLE CRONOBACTER SAKAZAKII (ENTEROBACTER SAKAZAKII) METALLO-BETA-LACTAMSE TITLE 2 HARLDQ MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRONOBACTER SAKAZAKII; SOURCE 3 ORGANISM_COMMON: ENTEROBACTER SAKAZAKII; SOURCE 4 ORGANISM_TAXID: 28141; SOURCE 5 GENE: CSK29544_03680; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS METALLO-BETA-LACTAMSE, METAL-BINDING PROTEIN, ANTIBIOTIC RESISTANCE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MONTEIRO PEDROSO,D.WAITE,M.NATASA,R.MCGEARY,L.GUDDAT,P.HUGENHOLTZ, AUTHOR 2 G.SCHENK REVDAT 4 11-OCT-23 6DQH 1 REMARK LINK REVDAT 3 24-JUN-20 6DQH 1 JRNL REVDAT 2 01-JAN-20 6DQH 1 REMARK REVDAT 1 19-JUN-19 6DQH 0 JRNL AUTH M.MONTEIRO PEDROSO,D.WAITE,O.MELSE,L.WILSON,N.MITIC, JRNL AUTH 2 R.MCGEARY,I.ANTES,L.GUDDAT,P.HUGENHOLTZ,G.SCHENK JRNL TITL BROAD SPECTRUM ANTIBIOTIC-DEGRADING METALLO-BETA-LACTAMASES JRNL TITL 2 ARE PHYLOGENETICALLY DIVERSE JRNL REF PROTEIN CELL 2020 JRNL REFN ESSN 1674-8018 JRNL DOI 10.1007/S13238-020-00736-4 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 86780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.2935 - 2.6596 0.94 6399 150 0.1943 0.2202 REMARK 3 2 2.6596 - 2.1112 0.99 6506 154 0.1525 0.1719 REMARK 3 3 2.1112 - 1.8443 0.98 6417 151 0.1489 0.1529 REMARK 3 4 1.8443 - 1.6757 0.98 6359 151 0.1592 0.1862 REMARK 3 5 1.6757 - 1.5556 0.97 6271 147 0.1611 0.1517 REMARK 3 6 1.5556 - 1.4639 0.97 6242 148 0.1694 0.1950 REMARK 3 7 1.4639 - 1.3906 0.96 6201 146 0.1782 0.1938 REMARK 3 8 1.3906 - 1.3301 0.96 6156 145 0.1896 0.1985 REMARK 3 9 1.3301 - 1.2789 0.95 6139 145 0.1897 0.1899 REMARK 3 10 1.2789 - 1.2347 0.95 6061 143 0.2046 0.2226 REMARK 3 11 1.2347 - 1.1961 0.94 6062 143 0.2151 0.2544 REMARK 3 12 1.1961 - 1.1619 0.94 6012 141 0.2233 0.2287 REMARK 3 13 1.1619 - 1.1313 0.94 5998 143 0.2367 0.2564 REMARK 3 14 1.1313 - 1.1037 0.62 3959 91 0.2784 0.3284 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2036 REMARK 3 ANGLE : 1.394 2777 REMARK 3 CHIRALITY : 0.078 298 REMARK 3 PLANARITY : 0.007 369 REMARK 3 DIHEDRAL : 15.779 739 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0597 -3.8051 -20.2543 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.0848 REMARK 3 T33: 0.0578 T12: 0.0086 REMARK 3 T13: 0.0121 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.0203 L22: 2.4299 REMARK 3 L33: 1.6287 L12: -0.7643 REMARK 3 L13: 0.9103 L23: 1.2396 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: 0.1005 S13: 0.0640 REMARK 3 S21: -0.0373 S22: 0.0088 S23: -0.1368 REMARK 3 S31: -0.0149 S32: 0.1207 S33: -0.0266 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9500 -1.0367 -27.7556 REMARK 3 T TENSOR REMARK 3 T11: 0.0752 T22: 0.0763 REMARK 3 T33: 0.0700 T12: 0.0064 REMARK 3 T13: -0.0035 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.7423 L22: 3.6910 REMARK 3 L33: 0.4056 L12: -2.1602 REMARK 3 L13: -0.0079 L23: 0.1548 REMARK 3 S TENSOR REMARK 3 S11: 0.1659 S12: 0.1719 S13: 0.0908 REMARK 3 S21: -0.2783 S22: -0.1471 S23: -0.0595 REMARK 3 S31: -0.0487 S32: -0.0393 S33: -0.0088 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9687 -9.4954 -25.0589 REMARK 3 T TENSOR REMARK 3 T11: 0.0824 T22: 0.0720 REMARK 3 T33: 0.0870 T12: 0.0059 REMARK 3 T13: -0.0003 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 3.9014 L22: 1.0927 REMARK 3 L33: 1.6069 L12: -0.3339 REMARK 3 L13: -0.9187 L23: 0.3337 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: 0.1872 S13: -0.2150 REMARK 3 S21: -0.0691 S22: -0.1059 S23: 0.0689 REMARK 3 S31: 0.0644 S32: -0.0754 S33: 0.0658 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2622 6.3071 -21.8598 REMARK 3 T TENSOR REMARK 3 T11: 0.0733 T22: 0.0814 REMARK 3 T33: 0.0750 T12: 0.0146 REMARK 3 T13: -0.0180 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.9741 L22: 1.7863 REMARK 3 L33: 1.6382 L12: -0.4178 REMARK 3 L13: -0.3682 L23: 1.0016 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: 0.0600 S13: -0.0130 REMARK 3 S21: -0.1739 S22: -0.0809 S23: 0.1386 REMARK 3 S31: -0.0804 S32: -0.1458 S33: 0.0551 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6522 4.0080 -19.3054 REMARK 3 T TENSOR REMARK 3 T11: 0.0897 T22: 0.1134 REMARK 3 T33: 0.1167 T12: 0.0279 REMARK 3 T13: -0.0038 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 0.8875 L22: 1.1266 REMARK 3 L33: 1.8674 L12: -0.0537 REMARK 3 L13: 0.2943 L23: 0.2295 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.0424 S13: -0.0111 REMARK 3 S21: -0.0729 S22: -0.0325 S23: 0.1866 REMARK 3 S31: -0.0136 S32: -0.2604 S33: -0.0325 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4711 5.0326 -9.1900 REMARK 3 T TENSOR REMARK 3 T11: 0.0586 T22: 0.0761 REMARK 3 T33: 0.0629 T12: -0.0031 REMARK 3 T13: -0.0011 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.7134 L22: 2.2239 REMARK 3 L33: 0.6357 L12: -0.4909 REMARK 3 L13: -0.2958 L23: 0.4287 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.0011 S13: -0.0559 REMARK 3 S21: 0.0359 S22: -0.0462 S23: 0.0912 REMARK 3 S31: 0.0207 S32: -0.0450 S33: 0.0473 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5998 8.9055 -6.5329 REMARK 3 T TENSOR REMARK 3 T11: 0.0359 T22: 0.0520 REMARK 3 T33: 0.0439 T12: -0.0020 REMARK 3 T13: -0.0051 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.4185 L22: 1.4012 REMARK 3 L33: 0.8163 L12: -0.8717 REMARK 3 L13: -0.4915 L23: 0.7357 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: 0.0128 S13: 0.0091 REMARK 3 S21: 0.0244 S22: 0.0353 S23: -0.0934 REMARK 3 S31: 0.0156 S32: 0.0627 S33: -0.0316 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DQH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7107 REMARK 200 MONOCHROMATOR : MX2 BEAMLINE AUSTRALIAN REMARK 200 SYNCHROTRON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86879 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 36.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 48.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6DN4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.49 M NAH2PO4 0.91 M K2HPO4, PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.88400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.12300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.30050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.12300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.88400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.30050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 44 REMARK 465 LEU A 45 REMARK 465 PHE A 46 REMARK 465 GLU A 47 REMARK 465 ALA A 48 REMARK 465 TRP A 49 REMARK 465 ALA A 50 REMARK 465 LYS A 51 REMARK 465 PRO A 52 REMARK 465 PRO A 309 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ALA A 101 N CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 289 CG - CD - NE ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG A 289 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 289 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 289 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 68 -128.13 51.52 REMARK 500 ASP A 85 166.05 68.52 REMARK 500 ALA A 86 23.14 -154.10 REMARK 500 TYR A 228 77.27 -156.27 REMARK 500 ASP A 283 77.18 -152.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 741 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 98.6 REMARK 620 3 HIS A 192 NE2 95.9 98.7 REMARK 620 4 PO4 A 405 O2 87.6 173.8 80.2 REMARK 620 5 HOH A 525 O 174.4 87.1 83.0 86.8 REMARK 620 6 HOH A 526 O 113.1 96.3 144.8 81.5 66.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6DN4 RELATED DB: PDB REMARK 900 WILD-TYPE PROTEIN DBREF1 6DQH A 44 309 UNP A0A0F6VWC7_CROSK DBREF2 6DQH A A0A0F6VWC7 59 318 SEQADV 6DQH HIS A 118 UNP A0A0F6VWC ARG 133 ENGINEERED MUTATION SEQRES 1 A 260 SER LEU PHE GLU ALA TRP ALA LYS PRO VAL GLN PRO PHE SEQRES 2 A 260 ALA ILE TRP PRO GLY VAL TRP TYR VAL GLY THR GLU ASN SEQRES 3 A 260 LEU SER SER VAL LEU LEU THR THR PRO GLN GLY HIS ILE SEQRES 4 A 260 LEU ILE ASP ALA GLY LEU ASP ALA SER ALA PRO GLN ILE SEQRES 5 A 260 ARG ARG ASN ILE GLU ALA LEU GLY PHE ARG MET ALA ASP SEQRES 6 A 260 ILE ARG TYR ILE ALA ASN SER HIS ALA HIS LEU ASP GLN SEQRES 7 A 260 ALA GLY GLY ILE ALA ARG LEU LYS ALA TRP SER GLY ALA SEQRES 8 A 260 ARG VAL ILE ALA SER HIS ALA ASN ALA GLU GLN MET ALA SEQRES 9 A 260 ARG GLY GLY LYS GLU ASP PHE ALA LEU GLY ASP ALA LEU SEQRES 10 A 260 PRO PHE PRO PRO VAL THR VAL ASP MET GLU ALA GLN ASP SEQRES 11 A 260 GLY GLN GLN TRP HIS LEU GLY GLY VAL THR LEU ALA ALA SEQRES 12 A 260 ILE PHE THR PRO GLY HIS LEU PRO GLY ALA THR SER TRP SEQRES 13 A 260 LYS VAL THR LEU ALA ASP GLY LYS THR LEU ILE TYR ALA SEQRES 14 A 260 ASP SER LEU ALA THR PRO GLY TYR PRO LEU ILE ASN ASN SEQRES 15 A 260 ARG ASN TYR PRO THR LEU VAL GLU ASP ILE ARG ARG SER SEQRES 16 A 260 PHE ALA ARG LEU GLU ALA GLN GLN VAL ASP ILE PHE LEU SEQRES 17 A 260 ALA ASN LYS GLY GLU ARG PHE GLY LEU MET ASP LYS MET SEQRES 18 A 260 ALA ARG LYS ALA ARG GLY GLU ASN ASN ALA PHE ILE ASP SEQRES 19 A 260 LYS ALA GLY LEU ALA ARG TYR VAL ALA GLN SER ARG ALA SEQRES 20 A 260 ALA PHE GLU LYS GLN LEU ALA ALA GLN ARG ALA GLN PRO HET ZN A 401 1 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 A 404 5 HET PO4 A 405 5 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION FORMUL 2 ZN ZN 2+ FORMUL 3 PO4 4(O4 P 3-) FORMUL 7 HOH *241(H2 O) HELIX 1 AA1 ALA A 90 LEU A 102 1 13 HELIX 2 AA2 ARG A 105 ALA A 107 5 3 HELIX 3 AA3 GLY A 124 GLY A 133 1 10 HELIX 4 AA4 HIS A 140 ARG A 148 1 9 HELIX 5 AA5 THR A 230 ALA A 244 1 15 HELIX 6 AA6 LYS A 260 PHE A 264 5 5 HELIX 7 AA7 GLY A 265 ARG A 275 1 11 HELIX 8 AA8 ALA A 285 ALA A 307 1 23 SHEET 1 AA1 7 PHE A 56 TRP A 59 0 SHEET 2 AA1 7 VAL A 62 TYR A 64 -1 O VAL A 62 N TRP A 59 SHEET 3 AA1 7 VAL A 73 LEU A 75 -1 O LEU A 74 N TRP A 63 SHEET 4 AA1 7 HIS A 81 ILE A 84 -1 O ILE A 82 N LEU A 75 SHEET 5 AA1 7 ILE A 109 ALA A 113 1 O ARG A 110 N HIS A 81 SHEET 6 AA1 7 ARG A 135 SER A 139 1 O ILE A 137 N ILE A 112 SHEET 7 AA1 7 MET A 169 ALA A 171 1 O MET A 169 N VAL A 136 SHEET 1 AA2 5 GLN A 176 LEU A 179 0 SHEET 2 AA2 5 VAL A 182 PHE A 188 -1 O LEU A 184 N TRP A 177 SHEET 3 AA2 5 THR A 197 THR A 202 -1 O SER A 198 N ILE A 187 SHEET 4 AA2 5 THR A 208 ALA A 212 -1 O LEU A 209 N VAL A 201 SHEET 5 AA2 5 ILE A 255 ALA A 258 1 O LEU A 257 N ILE A 210 LINK NE2 HIS A 116 ZN ZN A 401 1555 1555 2.08 LINK ND1 HIS A 118 ZN ZN A 401 1555 1555 2.07 LINK NE2 HIS A 192 ZN ZN A 401 1555 1555 2.05 LINK ZN ZN A 401 O2 PO4 A 405 1555 1555 2.32 LINK ZN ZN A 401 O HOH A 525 1555 1555 2.50 LINK ZN ZN A 401 O HOH A 526 1555 1555 2.04 SITE 1 AC1 6 HIS A 116 HIS A 118 HIS A 192 PO4 A 405 SITE 2 AC1 6 HOH A 525 HOH A 526 SITE 1 AC2 7 ARG A 127 TRP A 131 ARG A 241 GLN A 251 SITE 2 AC2 7 HOH A 514 HOH A 593 HOH A 615 SITE 1 AC3 7 ARG A 96 GLU A 100 ARG A 105 MET A 106 SITE 2 AC3 7 ALA A 107 ARG A 237 LYS A 300 SITE 1 AC4 9 ARG A 105 GLU A 233 ARG A 237 GLN A 293 SITE 2 AC4 9 HOH A 520 HOH A 527 HOH A 530 HOH A 547 SITE 3 AC4 9 HOH A 663 SITE 1 AC5 10 HIS A 116 HIS A 192 SER A 214 ALA A 216 SITE 2 AC5 10 ASN A 259 LYS A 260 ARG A 263 ZN A 401 SITE 3 AC5 10 HOH A 525 HOH A 526 CRYST1 43.768 68.601 76.246 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022848 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013115 0.00000